jgi.p|Nanoce1779_2|575008, mRNA_1007 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575008
Unique Name	mRNA_1007
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1406
Alignment location	scaffold_2:999372..1001134 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575094
Track	FilteredModels2
ProteinId	575008

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:999372..1001134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575008	gene_1007	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575008	mRNA_1007-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1007	CDS_1007	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:999372..1001134+
coding sequence from alignment at scaffold_2:999372..1001134+

mRNA sequence

>mRNA_1007 ID=mRNA_1007|Name=jgi.p|Nanoce1779_2|575008|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCCGCGGAGGAAGCACT
GGACGCGGAGATTATGCAGATGTCATCGGAGGAAATCCGGCAACGCATCC
GCCTGCTTGACAACGAGATTCGCATCATGAAGTCGGACATTACCAGCATT
GATTCCGATTCTGAAAGCCAACGCAAGCGAATCAAAGAAAATCTCGACAA
AATTAAATTGAACAAACAGCTGCCTTACCTGGTTGGGAACGTCGTCGAAG
TTCTTGACATGGAAGAAGAGGAGGAAGAGGAGGAGGACGGTGCCGCCGCG
GATATCGACAGTCAACGCAAGGGTGTCTCTGCAGTAATCAAAACCTCTAC
CCGTCAAACAATTTTCTTGCCCATCCCTGGATTGGTGGATGTGAATGAGC
TGAAGCCCGGTGACCTTGTAGGGACAAACAAAGACTCGTATCTGATCTTG
GAGAAGCTGCCAGCGGAGTACGATAGCAGAGTGAAGGCCATGGAGGTGGA
TGCAAAGCCAACGGAAGAGTGGGGGGATATCGGGGGGTGTGATAAGCAGA
TTCAGGAGTTGATGGAGGCTGTGGTCTTGCCCATGACCAGGAAGGATTTG
TTCATCAAGATAGGGGTCAAGCCACCAAAGGGTGTGTTGTTATACGGCCC
TCCCGGAACAGGCAAAACGATGCTTGCCCGCGCCTGCGCCAACAAGACCA
ATGCCATCTTCCTCAAGCTAGCAGGACCTCAGCTTGTGCAGATGTTCATT
GGTGACGGGGCCAAGATGGTGCGCGACGCATTCGAACTCGCAAAGGAGAA
ATGCGCAGAGTCAGGCGAAGGAGGAGCGATCATCTTTATTGACGAGTTGG
ACGCGATTGGCTCAAAGCGGTTCGGGGGGGATCAGAGTGGGGATCGGGAG
GTGCAGCGCACAATGTTGGAGCTGTTGAATCAGCTGGATGGATTTACTCC
CAACGATAATATTAAAGTGATTGCCGCGACGAATCGACCGGACGTCTTGG
ACCCGGCCTTGTTGCGTTCGGGGCGGTTGGACAGGAAGATAGAGCTGCCC
CACCCGACAGAGGAGGCCCGGGCAAGGATCATGGAGATTCACTCGAGGAA
GATGAATGTGGATAAGGACGACGTGAATTTTGAGGAGTTGGCACGGTGCT
GTGACGATTTTAATGGGGCTCAGCTGAAAGCGGTGTGTGTGGAGGCGGGC
ATGTTGGCCCTGCGGAGGGAAGCGGTGGAGATCAAGCATGAGGACTTTAT
GGAAGCCATTAGTGTGGTTCAGGCGAAGAAGAAGGGTAGTTTGGCCATGT
ATGCTTAGGGACGGGGAGAGGATGAGGAGGAGCGGAGGGAGGGAGAGAGG
GAGAAAGTGAGAGAGTGGACAAAACACGGGAAAAAAAGAAGAAGAGTATG
CAAGGA

protein sequence of jgi.p|Nanoce1779_2|575008

>mRNA_1007-protein ID=mRNA_1007-protein|Name=jgi.p|Nanoce1779_2|575008|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MQMSSEEIRQRIRLLDNEIRIMKSDITSIDSDSESQRKRIKENLDKIKLN
KQLPYLVGNVVEVLDMEEEEEEEEDGAAADIDSQRKGVSAVIKTSTRQTI
FLPIPGLVDVNELKPGDLVGTNKDSYLILEKLPAEYDSRVKAMEVDAKPT
EEWGDIGGCDKQIQELMEAVVLPMTRKDLFIKIGVKPPKGVLLYGPPGTG
KTMLARACANKTNAIFLKLAGPQLVQMFIGDGAKMVRDAFELAKEKCAES
GEGGAIIFIDELDAIGSKRFGGDQSGDREVQRTMLELLNQLDGFTPNDNI
KVIAATNRPDVLDPALLRSGRLDRKIELPHPTEEARARIMEIHSRKMNVD
KDDVNFEELARCCDDFNGAQLKAVCVEAGMLALRREAVEIKHEDFMEAIS
VVQAKKKGSLAMYA*

mRNA from alignment at scaffold_2:999372..1001134+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1007 ID=mRNA_1007|Name=jgi.p|Nanoce1779_2|575008|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp|location=Sequence derived from alignment at scaffold_2:999372..1001134+ (Nannochloropsis oceanica)
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCCGCGGAGGAAGCACT
GGACGCGGAGATTATGCAGGTATGTGTCATGTGTGTAGGTTGAGCGTGTG
GGGCCGTAGGGGGGGCTCTTTGTCCTTTTGTGTTTCAGCTTCCCATGCGC
AGTGAAGAGAACAGGAACATGCTCATTCTAGACGCTTTTTCTATGCTACC
ATTGATTCGTGATAGCCCCCTCACCCGACCCATTTCTCCCTCCTTCCGTT
CCTCCCTCCCTCCCCCTCACATTTAGATGTCATCGGAGGAAATCCGGCAA
CGCATCCGCCTGCTTGACAACGAGATTCGCATCATGAAGTCGGACATTAC
CAGCATTGATTCCGATTCTGAAAGCCAACGCAAGCGAATCAAAGAAAATC
TCGACAAAATTAAATTGAACAAACAGCTGCCTTACCTGGTTGGGAACGTC
GTCGAAGTTCTTGACATGGAAGAAGAGGAGGAAGAGGAGGAGGACGGTGC
CGCCGCGGATATCGACAGTCAACGCAAGGGTGTCTCTGCAGTAATCAAAA
CCTCTACCCGTCAAACAATTTTCTTGCCCATCCCTGGATTGGTGGATGTG
AATGAGCTGAAGCCCGGTGACCTTGTAGGGACAAACAAAGACTCGTATCT
GATCTTGGAGAAGCTGCCAGCGGAGTACGATAGCAGAGTGAAGGCCATGG
AGGTGGATGCAAAGCCAACGGAAGAGTGGGGGGATATCGGGGGGTGTGAT
AAGCAGATTCAGGAGTTGATGGAGGCTGTGGTCTTGCCCATGACCAGGAA
GGATTTGTTCATCAAGATAGGGGTCAAGCCACCAAAGGGTGTGTTGTTAT
ACGGGTGAGTAATTATGAGGGGAGGGTTAGAGAGAAGAAGAGGAAATGGG
TACACCGTCTGCGAAAACATACATAACGACCGACAACTCAATTGAGGTTT
TCTCTCCCTCCCTCCCTCCCTCCCGCCGTCTCTCTCATCCCTTTATCTTA
ACAGCCCTCCCGGAACAGGCAAAACGATGCTTGCCCGCGCCTGCGCCAAC
AAGACCAATGCCATCTTCCTCAAGCTAGCAGGACCTCAGCTTGTGCAGAT
GTTCATTGGTGACGGGGCCAAGATGGTGCGCGACGCATTCGAACTCGCAA
AGGAGAAATGCGCAGAGTCAGGCGAAGGAGGAGCGATCATCTTTATTGAC
GAGTTGGACGCGATTGGCTCAAAGCGGTTCGGGGGGGATCAGAGTGGGGA
TCGGGAGGTGCAGCGCACAATGTTGGAGCTGTTGAATCAGCTGGATGGAT
TTACTCCCAACGATAATATTAAAGTGATTGCCGCGACGAATCGACCGGAC
GTCTTGGACCCGGCCTTGTTGCGTTCGGGGCGGTTGGACAGGAAGATAGA
GCTGCCCCACCCGACAGAGGAGGCCCGGGCAAGGATCATGGAGATTCACT
CGAGGAAGATGAATGTGGATAAGGACGACGTGAATTTTGAGGAGTTGGCA
CGGTGCTGTGACGATTTTAATGGGGCTCAGCTGAAAGCGGTGTGTGTGGA
GGCGGGCATGTTGGCCCTGCGGAGGGAAGCGGTGGAGATCAAGCATGAGG
ACTTTATGGAAGCCATTAGTGTGGTTCAGGCGAAGAAGAAGGGTAGTTTG
GCCATGTATGCTTAGGGACGGGGAGAGGATGAGGAGGAGCGGAGGGAGGG
AGAGAGGGAGAAAGTGAGAGAGTGGACAAAACACGGGAAAAAAAGAAGAA
GAGTATGCAAGGA

Coding sequence (CDS) from alignment at scaffold_2:999372..1001134+

>mRNA_1007 ID=mRNA_1007|Name=jgi.p|Nanoce1779_2|575008|organism=Nannochloropsis oceanica|type=CDS|length=3735bp|location=Sequence derived from alignment at scaffold_2:999372..1001134+ (Nannochloropsis oceanica)
ATGCAGATGTCATCGGAGGAAATCCGGCAACGCATCCGCCTGCTTGACAA
CGAGATTCGCATCATGAAGTCGGACATTACCAGCATTGATTCCGATTCTG
AAAGCCAACGCAAGCGAATCAAAGAAAATCTCGACAAAATTAAATTGAAC
AAACAGCTGCCTTACCTGGTTGGGAACGTCGTCGAAGTTCTTGACATGGA
AGAAGAGGAGGAAGAGGAGGAGGACGGTGCCGCCGCGGATATCGACAGTC
AACGCAAGGGTGTCTCTGCAGTAATCAAAACCTCTACCCGTCAAACAATT
TTCTTGCCCATCCCTGGATTGGTGGATGTGAATGAGCTGAAGCCCGGTGA
CCTTGTAGGGACAAACAAAGACTCGTATCTGATCTTGGAGAAGCTGCCAG
CGGAGTACGATAGCAGAGTGAAGGCCATGGAGGTGGATGCAAAGCCAACG
GAAGAGTGGGGGGATATCGGGGGGTGTGATAAGCAGATTCAGGAGTTGAT
GGAGGCTGTGGTCTTGCCCATGACCAGGAAGGATTTGTTCATCAAGATAG
GGGTCAAGCCACCAAAGGGTGTGTTGTTATACGGCCCTCCCGGAACAGGC
AAAACGATGCTTGCCCGCGCCTGCGCCAACAAGACCAATGCCATCTTCCT
CAAGCTAGCAGGACCTCAGCTTGTGCAGATGTTCATTGGTGACGGGGCCA
AGATGGTGCGCGACGCATTCGAACTCGCAAAGGAGAAATGCGCAGAGTCA
GGCGAAGGAGGAGCGATCATCTTTATTGACGAGTTGGACGCGATTGGCTC
AAAGCGGTTCGGGGGGGATCAGAGTGGGGATCGGGAGGTGCAGCGCACAA
TGTTGGAGCTGTTGAATCAGCTGGATGGATTTACTCCCAACGATAATATT
AAAGTGATTGCCGCGACGAATCGACCGGACGTCTTGGACCCGGCCTTGTT
GCGTTCGGGGCGGTTGGACAGGAAGATAGAGCTGCCCCACCCGACAGAGG
AGGCCCGGGCAAGGATCATGGAGATTCACTCGAGGAAGATGAATGTGGAT
AAGGACGACGTGAATTTTGAGGAGTTGGCACGGTGCTGTGACGATTTTAA
TGGGGCTCAGCTGAAAGCGGTGTGTGTGGAGGCGGGCATGTTGGCCCTGC
GGAGGGAAGCGGTGGAGATCAAGCATGAGGACTTTATGGAAGCCATTAGT
GTGGTTCAGGCGAAGAAGAAGGGTAGTTTGGCCATGTATGCTTAGATGCA
GATGTCATCGGAGGAAATCCGGCAACGCATCCGCCTGCTTGACAACGAGA
TTCGCATCATGAAGTCGGACATTACCAGCATTGATTCCGATTCTGAAAGC
CAACGCAAGCGAATCAAAGAAAATCTCGACAAAATTAAATTGAACAAACA
GCTGCCTTACCTGGTTGGGAACGTCGTCGAAGTTCTTGACATGGAAGAAG
AGGAGGAAGAGGAGGAGGACGGTGCCGCCGCGGATATCGACAGTCAACGC
AAGGGTGTCTCTGCAGTAATCAAAACCTCTACCCGTCAAACAATTTTCTT
GCCCATCCCTGGATTGGTGGATGTGAATGAGCTGAAGCCCGGTGACCTTG
TAGGGACAAACAAAGACTCGTATCTGATCTTGGAGAAGCTGCCAGCGGAG
TACGATAGCAGAGTGAAGGCCATGGAGGTGGATGCAAAGCCAACGGAAGA
GTGGGGGGATATCGGGGGGTGTGATAAGCAGATTCAGGAGTTGATGGAGG
CTGTGGTCTTGCCCATGACCAGGAAGGATTTGTTCATCAAGATAGGGGTC
AAGCCACCAAAGGGTGTGTTGTTATACGGCCCTCCCGGAACAGGCAAAAC
GATGCTTGCCCGCGCCTGCGCCAACAAGACCAATGCCATCTTCCTCAAGC
TAGCAGGACCTCAGCTTGTGCAGATGTTCATTGGTGACGGGGCCAAGATG
GTGCGCGACGCATTCGAACTCGCAAAGGAGAAATGCGCAGAGTCAGGCGA
AGGAGGAGCGATCATCTTTATTGACGAGTTGGACGCGATTGGCTCAAAGC
GGTTCGGGGGGGATCAGAGTGGGGATCGGGAGGTGCAGCGCACAATGTTG
GAGCTGTTGAATCAGCTGGATGGATTTACTCCCAACGATAATATTAAAGT
GATTGCCGCGACGAATCGACCGGACGTCTTGGACCCGGCCTTGTTGCGTT
CGGGGCGGTTGGACAGGAAGATAGAGCTGCCCCACCCGACAGAGGAGGCC
CGGGCAAGGATCATGGAGATTCACTCGAGGAAGATGAATGTGGATAAGGA
CGACGTGAATTTTGAGGAGTTGGCACGGTGCTGTGACGATTTTAATGGGG
CTCAGCTGAAAGCGGTGTGTGTGGAGGCGGGCATGTTGGCCCTGCGGAGG
GAAGCGGTGGAGATCAAGCATGAGGACTTTATGGAAGCCATTAGTGTGGT
TCAGGCGAAGAAGAAGGGTAGTTTGGCCATGTATGCTTAGATGCAGATGT
CATCGGAGGAAATCCGGCAACGCATCCGCCTGCTTGACAACGAGATTCGC
ATCATGAAGTCGGACATTACCAGCATTGATTCCGATTCTGAAAGCCAACG
CAAGCGAATCAAAGAAAATCTCGACAAAATTAAATTGAACAAACAGCTGC
CTTACCTGGTTGGGAACGTCGTCGAAGTTCTTGACATGGAAGAAGAGGAG
GAAGAGGAGGAGGACGGTGCCGCCGCGGATATCGACAGTCAACGCAAGGG
TGTCTCTGCAGTAATCAAAACCTCTACCCGTCAAACAATTTTCTTGCCCA
TCCCTGGATTGGTGGATGTGAATGAGCTGAAGCCCGGTGACCTTGTAGGG
ACAAACAAAGACTCGTATCTGATCTTGGAGAAGCTGCCAGCGGAGTACGA
TAGCAGAGTGAAGGCCATGGAGGTGGATGCAAAGCCAACGGAAGAGTGGG
GGGATATCGGGGGGTGTGATAAGCAGATTCAGGAGTTGATGGAGGCTGTG
GTCTTGCCCATGACCAGGAAGGATTTGTTCATCAAGATAGGGGTCAAGCC
ACCAAAGGGTGTGTTGTTATACGGCCCTCCCGGAACAGGCAAAACGATGC
TTGCCCGCGCCTGCGCCAACAAGACCAATGCCATCTTCCTCAAGCTAGCA
GGACCTCAGCTTGTGCAGATGTTCATTGGTGACGGGGCCAAGATGGTGCG
CGACGCATTCGAACTCGCAAAGGAGAAATGCGCAGAGTCAGGCGAAGGAG
GAGCGATCATCTTTATTGACGAGTTGGACGCGATTGGCTCAAAGCGGTTC
GGGGGGGATCAGAGTGGGGATCGGGAGGTGCAGCGCACAATGTTGGAGCT
GTTGAATCAGCTGGATGGATTTACTCCCAACGATAATATTAAAGTGATTG
CCGCGACGAATCGACCGGACGTCTTGGACCCGGCCTTGTTGCGTTCGGGG
CGGTTGGACAGGAAGATAGAGCTGCCCCACCCGACAGAGGAGGCCCGGGC
AAGGATCATGGAGATTCACTCGAGGAAGATGAATGTGGATAAGGACGACG
TGAATTTTGAGGAGTTGGCACGGTGCTGTGACGATTTTAATGGGGCTCAG
CTGAAAGCGGTGTGTGTGGAGGCGGGCATGTTGGCCCTGCGGAGGGAAGC
GGTGGAGATCAAGCATGAGGACTTTATGGAAGCCATTAGTGTGGTTCAGG
CGAAGAAGAAGGGTAGTTTGGCCATGTATGCTTAG

Synonyms

Publications