jgi.p|Nanoce1779_2|316241, mRNA_10067 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|316241
Unique NamemRNA_10067
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length692
Alignment locationscaffold_46:23231..23922 -

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Properties
Property NameValue
TranscriptId316327
TrackFilteredModels2
ProteinId316241
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:23231..23922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|316241gene_10067Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|316241mRNA_10067-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10067CDS_10067Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10067 ID=mRNA_10067|Name=jgi.p|Nanoce1779_2|316241|organism=Nannochloropsis oceanica|type=mRNA|length=692bp
CACAAGCAAGCCAACAATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGC
TTGCTTTATGCGCCAGTAATGCGGCCGCCGGTTACACCAAGACGGTCAAC
GCCTCCACCTACGCTCTGACAACGTATGATGCCGCCGCTGACAAGCCCCT
CCAGGTGAAGCCCAACACCGTCTACACCATCGACAAGTTTCTCGACGAAG
ACTACCACATTGTAATCCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAG
AAGAAGGGTTTCATCACCTATTTGAGCTATTACGAAGGCTTTAATGACAG
TGGTCTCGAAGTCTATGGGGACGGCAGCGACGATGTACAAGGTGAAATAT
GGAGTGCCGTTGGTGATCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGC
ACCAATGGCAAGCTTACCTTTGGCTTTAATTATGAAGGCTCATGATAGCG
TGTCGTACTGAATATTATGATTGAATGACCGGACCAGCTTCTCATTCCAA
TCTCTATTTGTTTGCTGTGATGTGTTGCCGAGACGCGTGTATCTTTGACG
ACGTCCTGTCATTTCTACTCTTGCACGAGGATGTGAGCATAATTCAGGGA
CCGATGAAAGCCCGGCAACCCCATCAGAAGCCTTGGTGGATGAATAATCA
CATGGTACGGAGTGGAGAAGTAGCTAAAGAATCAAAAGTAAG
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protein sequence of jgi.p|Nanoce1779_2|316241

>mRNA_10067-protein ID=mRNA_10067-protein|Name=jgi.p|Nanoce1779_2|316241|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MFIKKLPSLLVLALCASNAAAGYTKTVNASTYALTTYDAAADKPLQVKPN
TVYTIDKFLDEDYHIVIQCPQPKNGRMKKKGFITYLSYYEGFNDSGLEVY
GDGSDDVQGEIWSAVGDPGYGSFLALFCTNGKLTFGFNYEGS*
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mRNA from alignment at scaffold_46:23231..23922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10067 ID=mRNA_10067|Name=jgi.p|Nanoce1779_2|316241|organism=Nannochloropsis oceanica|type=mRNA|length=692bp|location=Sequence derived from alignment at scaffold_46:23231..23922- (Nannochloropsis oceanica)
CACAAGCAAGCCAACAATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGC
TTGCTTTATGCGCCAGTAATGCGGCCGCCGGTTACACCAAGACGGTCAAC
GCCTCCACCTACGCTCTGACAACGTATGATGCCGCCGCTGACAAGCCCCT
CCAGGTGAAGCCCAACACCGTCTACACCATCGACAAGTTTCTCGACGAAG
ACTACCACATTGTAATCCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAG
AAGAAGGGTTTCATCACCTATTTGAGCTATTACGAAGGCTTTAATGACAG
TGGTCTCGAAGTCTATGGGGACGGCAGCGACGATGTACAAGGTGAAATAT
GGAGTGCCGTTGGTGATCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGC
ACCAATGGCAAGCTTACCTTTGGCTTTAATTATGAAGGCTCATGATAGCG
TGTCGTACTGAATATTATGATTGAATGACCGGACCAGCTTCTCATTCCAA
TCTCTATTTGTTTGCTGTGATGTGTTGCCGAGACGCGTGTATCTTTGACG
ACGTCCTGTCATTTCTACTCTTGCACGAGGATGTGAGCATAATTCAGGGA
CCGATGAAAGCCCGGCAACCCCATCAGAAGCCTTGGTGGATGAATAATCA
CATGGTACGGAGTGGAGAAGTAGCTAAAGAATCAAAAGTAAG
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Coding sequence (CDS) from alignment at scaffold_46:23231..23922-

>mRNA_10067 ID=mRNA_10067|Name=jgi.p|Nanoce1779_2|316241|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_46:23231..23922- (Nannochloropsis oceanica)
ATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGCTTGCTTTATGCGCCAG
TAATGCGGCCGCCGGTTACACCAAGACGGTCAACGCCTCCACCTACGCTC
TGACAACGTATGATGCCGCCGCTGACAAGCCCCTCCAGGTGAAGCCCAAC
ACCGTCTACACCATCGACAAGTTTCTCGACGAAGACTACCACATTGTAAT
CCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAGAAGAAGGGTTTCATCA
CCTATTTGAGCTATTACGAAGGCTTTAATGACAGTGGTCTCGAAGTCTAT
GGGGACGGCAGCGACGATGTACAAGGTGAAATATGGAGTGCCGTTGGTGA
TCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGCACCAATGGCAAGCTTA
CCTTTGGCTTTAATTATGAAGGCTCATGA
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Synonyms
Publications