jgi.p|Nanoce1779_2|609559, mRNA_10066 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609559
Unique Name	mRNA_10066
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1640
Alignment location	scaffold_46:17750..19574 +

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Properties


Property Name	Value
TranscriptId	609645
Track	FilteredModels2
ProteinId	609559

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:17750..19574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609559	gene_10066	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609559	mRNA_10066-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10066	CDS_10066	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_46:17750..19574+
coding sequence from alignment at scaffold_46:17750..19574+

mRNA sequence

>mRNA_10066 ID=mRNA_10066|Name=jgi.p|Nanoce1779_2|609559|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp
GCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGAAGGAGCAGCAGAAGG
AGCTCCACCACCACCGCCGTTGGTGTACTTGCCCCAATCGAAGCCGCCGG
GGCCACCACCTCCCGAGGAGGAGGAGGGGGAGCCGGAGGGAGGGCTGGAG
GGAGGGCCGGAGGGGTGACTGCCGCCCCCAGCAGCAGGGCTTCCTCCACT
GGCGCCTCCGCCGTTGGTGTACTTGCTCCAGTCGAAGCCACCGGGGGAGG
GAGGGGAGGCCGTAGCAGTGGCAGCCGAGGAAGAACCGAGGACGACAGTG
CCCGCCGTGGCAGTGTCTAGGGCATCTACAGCCGTTGTTCTGTTCAAGTT
CGAAGGGTGGGATGGCGGGACTGTCCCGTTGTTCGTGTTGATGGTGATAT
TTACGCCGGGTGGGACGTATTTGGACCAGTCGAACGGCGCTTGTCCACCT
GGCTGGGCGCCCGAAGCAGGGGAGGAGGGGGAGGGCGCGGGAGAGGACGA
GATAGTGGTGGCGTTGTTGGTATTGGTCGTTACGTTGACGCCGGGCGGAA
CGTACTTAGACCAGTCAAAACCCCCCGTCGAGGAGGAGGAAGGAGAGGAG
GATGAGGAGGGAGAAGCGCCGCCGACGCCTGCCCCTCCTCCTGTACCGGC
ACCACCCACGCCACCAGGGACGTACTTTTGCCAGTCAAAGGGTGCGGTGG
TGTTTTCAGCCGCGGTAGTGCCGTTGCTCTCCATGGCCGTAGAAGAAGGA
GAAGCCGAGGCATCTGTGGTTGTGGTGGTGGTGGTCTTGGTGGTGGTGGT
GGTAGTAGTAGTCGATTTGGGCTTGGCTTTGTCCTCGGCCTGGTGGTGGT
GCTTGTGGTGGTGATGCTTCGGCGGGTTTTTCTCGTGCTTCTTCTTCCGG
GCCAGCTCCACCATAGAAGGAGGCAAGGGCGAGGCAACCCGCTCAAGGGG
AGACATCGGCGCTGTCACGTCGGCCCCGTCTTCGTCCTCAGTCTCGTCAT
CAACCTCCGAAAACGCCACCGCCTTCTTCTTGCCACCCTTGGTCTTCTCG
CCGCAGCCACAGCCTCTACTACCATCCGTGTCGGGATCCATCGACATCAT
CTCCTCGCCTTTGCCACAGCCATTACATCCCTTCCCGCACTTACAGCTGC
CTTCGCAACCCCCTTCCCGAGGCAGGGAGGAGGAAGGTAGAGAGAGGGCG
ATCGTGCTGGGGTCCTGGGGGGAGCCGCAGCCCGAACATGAGGAGCCACA
ACCACAGCTACCACTGCTTTCACATCCGCAGGAGCAGCCACAGGGCGAGG
GAGAACCTTCCACCGCACTCGTGGCGGTAGCTAACGCTGCAGATCCCGGC
GTGACCCCACGAAGCAAGGCCGACCTCCCGCCCGTCGTATTGCTTATGGC
CAGGGCAGTGGTCAGCGCTAGACACGAGACTATGACTACGCCCACGGCCA
TCCGCACCCACCACCGATGACGGCGGCTACTGGCGTCTTCGTTCAGGTGG
AGTATCGTGGGCTGGTCGTCAAAGTCTTCTCCTGCTCCGCCGGCGGCCAA
GACGCTGTTTGCCTCGTCATATCTCACACTGCCGCTACCCGTAACATCGT
GAGCAGATTGATACGTCATACCTCCCCAAATCACTGTGCT

protein sequence of jgi.p|Nanoce1779_2|609559

>mRNA_10066-protein ID=mRNA_10066-protein|Name=jgi.p|Nanoce1779_2|609559|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MVIFTPGGTYLDQSNGACPPGWAPEAGEEGEGAGEDEIVVALLVLVVTLT
PGGTYLDQSKPPVEEEEGEEDEEGEAPPTPAPPPVPAPPTPPGTYFCQSK
GAVVFSAAVVPLLSMAVEEGEAEASVVVVVVVLVVVVVVVVDLGLALSSA
WWWCLWW*

mRNA from alignment at scaffold_46:17750..19574+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10066 ID=mRNA_10066|Name=jgi.p|Nanoce1779_2|609559|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_46:17750..19574+ (Nannochloropsis oceanica)
GCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGAAGGAGCAGCAGAAGG
AGCTCCACCACCACCGCCGTTGGTGTACTTGCCCCAATCGAAGCCGCCGG
GGCCACCACCTCCCGAGGAGGAGGAGGGGGAGCCGGAGGGAGGGCTGGAG
GGAGGGCCGGAGGGGTGACTGCCGCCCCCAGCAGCAGGGCTTCCTCCACT
GGCGCCTCCGCCGTTGGTGTACTTGCTCCAGTCGAAGCCACCGGGGGAGG
GAGGGGAGGCCGTAGCAGTGGCAGCCGAGGAAGAACCGAGGACGACAGTG
CCCGCCGTGGCAGTGTCTAGGGCATCTACAGCCGTTGTTCTGTTCAAGTT
CGAAGGGTGGGATGGCGGGACTGTCCCGTTGTTCGTGTTGATGGTGATAT
TTACGCCGGGTGGGACGTATTTGGACCAGTCGAACGGCGCTTGTCCACCT
GGCTGGGCGCCCGAAGCAGGGGAGGAGGGGGAGGGCGCGGGAGAGGACGA
GATAGTGGTGGCGTTGTTGGTATTGGTCGTTACGTTGACGCCGGGCGGAA
CGTACTTAGACCAGTCAAAACCCCCCGTCGAGGAGGAGGAAGGAGAGGAG
GATGAGGAGGGAGAAGCGCCGCCGACGCCTGCCCCTCCTCCTGTACCGGC
ACCACCCACGCCACCAGGGACGTACTTTTGCCAGTCAAAGGGTGCGGTGG
TGTTTTCAGCCGCGGTAGTGCCGTTGCTCTCCATGGCCGTAGAAGAAGGA
GAAGCCGAGGCATCTGTGGTTGTGGTGGTGGTGGTCTTGGTGGTGGTGGT
GGTAGTAGTAGTCGATTTGGGCTTGGCTTTGTCCTCGGCCTGGTGGTGGT
GCTTGTGGTGGTGATGCTTCGGCGGGTTTTTCTCGTGCTTCTTCTTCCGG
GCCAGCTCCACCATAGAAGGAGGCAAGGGCGAGGCAACCCGCTCAAGGGG
AGACATCGGCGCTGTCACGTCGGCCCCGTCTTCGTCCTCAGTCTCGTCAT
CAACCTCCGAAAACGCCACCGCCTTCTTCTTGCCACCCTTGGTCTTCTCG
CCGCAGCCACAGCCTCTACTACCATCCGTGTCGGGATCCATCGACATCAT
CTCCTCGCCTTTGCCACAGCCATTACATCCCTTCCCGCACTTACAGCTGC
CTTCGCAACCCCCTTCCCGAGGCAGGGAGGAGGAAGGTAGAGAGAGGGCG
ATCGTGCTGGGGTCCTGGGGGGAGCCGCAGCCCGAACATGAGGAGCCACA
ACCACAGCTACCACTGCTTTCACATCCGCAGGAGCAGCCACAGGGCGAGG
GAGAACTGTTGTGTGAGGAAGTAGTACGGTAAGGGGAAGTATGAGTGTAA
GTGAATCTTGGATTGGAGATATGAATGAGCAAGTAAAGGGGTGTACGATT
CGATTCATGGCACCAGACACACTTATCATAGTCGCCCTTCACAGCCAAAG
CACACATCTTTTTCAAGCATATCCTGACAACAGTACGTACCCTTCCACCG
CACTCGTGGCGGTAGCTAACGCTGCAGATCCCGGCGTGACCCCACGAAGC
AAGGCCGACCTCCCGCCCGTCGTATTGCTTATGGCCAGGGCAGTGGTCAG
CGCTAGACACGAGACTATGACTACGCCCACGGCCATCCGCACCCACCACC
GATGACGGCGGCTACTGGCGTCTTCGTTCAGGTGGAGTATCGTGGGCTGG
TCGTCAAAGTCTTCTCCTGCTCCGCCGGCGGCCAAGACGCTGTTTGCCTC
GTCATATCTCACACTGCCGCTACCCGTAACATCGTGAGCAGATTGATACG
TCATACCTCCCCAAATCACTGTGCT

Coding sequence (CDS) from alignment at scaffold_46:17750..19574+

>mRNA_10066 ID=mRNA_10066|Name=jgi.p|Nanoce1779_2|609559|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_46:17750..19574+ (Nannochloropsis oceanica)
ATGGTGATATTTACGCCGGGTGGGACGTATTTGGACCAGTCGAACGGCGC
TTGTCCACCTGGCTGGGCGCCCGAAGCAGGGGAGGAGGGGGAGGGCGCGG
GAGAGGACGAGATAGTGGTGGCGTTGTTGGTATTGGTCGTTACGTTGACG
CCGGGCGGAACGTACTTAGACCAGTCAAAACCCCCCGTCGAGGAGGAGGA
AGGAGAGGAGGATGAGGAGGGAGAAGCGCCGCCGACGCCTGCCCCTCCTC
CTGTACCGGCACCACCCACGCCACCAGGGACGTACTTTTGCCAGTCAAAG
GGTGCGGTGGTGTTTTCAGCCGCGGTAGTGCCGTTGCTCTCCATGGCCGT
AGAAGAAGGAGAAGCCGAGGCATCTGTGGTTGTGGTGGTGGTGGTCTTGG
TGGTGGTGGTGGTAGTAGTAGTCGATTTGGGCTTGGCTTTGTCCTCGGCC
TGGTGGTGGTGCTTGTGGTGGTGA

Synonyms

Publications