jgi.p|Nanoce1779_2|609554, mRNA_10064 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609554
Unique NamemRNA_10064
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1009
Alignment locationscaffold_46:14778..16146 +

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Properties
Property NameValue
TranscriptId609640
TrackFilteredModels2
ProteinId609554
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:14778..16146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609554gene_10064Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609554mRNA_10064-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10064CDS_10064Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10064 ID=mRNA_10064|Name=jgi.p|Nanoce1779_2|609554|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp
CGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCGTCAACACCCCTCTTGC
CGTCGCCGGCCTCGATCCCAAGGCAATACTTCGATCGTAGGCCTTCATCA
CCACCGCCAGCTGCAGCAGCACCATCACCACCACCTTTCACAGTCTCCCC
GCTCTCCCAGCATAAGTATGTACATCGACACCCAGAAAGACAGCCACTAC
CAGAAGAACGGCGGGGCCGAATGGGGCCATTGCAGGCCATACAGACCTGG
CTCGCTCCCGGCCCAGCTCCTCTTTTCCCGCCCCACCGCTCATCTTCCTC
TTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCTACAACAAGCAAGC
CACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGCAACTCTCCGTTTC
CCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCTCCGCCCTCTTCAT
TTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTTGGCATCGCCTCCC
TCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCCTCCCTCCCTTCCT
CACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCGTGGCAGGCTGGAT
GCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCACAGCTCTCTCCCCT
GGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCTCCCCTTCTACCAC
GTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGGGCGCAGTAGCGTG
TGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTTTGGACCGTGCTGG
GGACCTACTGGCTCATGGGACTGTTGTACGAGTGGGCACACTTCAGCGTG
CACACTCGCGTTCGACCCCGCACTGCTCTCGGCAAGGCAGTCAAAGCCCA
CCACACCAAGCACCACCTGAAGTGTGACGGCCTTTGGTTCGCCTTTTCTT
GGCCATGGATCGACACCGTGATGGGGACGGTTCCAGGGAGGGAGGGAGGG
TGAAGAAAG
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protein sequence of jgi.p|Nanoce1779_2|609554

>mRNA_10064-protein ID=mRNA_10064-protein|Name=jgi.p|Nanoce1779_2|609554|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MGPLQAIQTWLAPGPAPLFPPHRSSSSSSPSFPSPVPSSTTSKPLVDVRQ
LSSEDATLRFPSADFAVPTTLPSALFIFFSHPSIILILVGIASLSTGRLL
SSPLLPPSLPHLLFELTLIPLTVAGWMLQEWSLHRFLLHSSLPWPGREIH
AQHHALPFYHVSIDPPLLVAVWGAVACGAGWLMLPQPWVWTVLGTYWLMG
LLYEWAHFSVHTRVRPRTALGKAVKAHHTKHHLKCDGLWFAFSWPWIDTV
MGTVPGREGG*
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mRNA from alignment at scaffold_46:14778..16146+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10064 ID=mRNA_10064|Name=jgi.p|Nanoce1779_2|609554|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at scaffold_46:14778..16146+ (Nannochloropsis oceanica)
CGCTCTCATAAGCAGGGCATGTTTTGTCCTTCCGTCAACACCCCTCTTGC
CGTCGCCGGCCTCGATCCCAAGGCAATACTTCGATCGTAGGCCTTCATCA
CCACCGCCAGCTGCAGCAGCACCATCACCACCACCTTTCACAGTCTCCCC
GCTCTCCCAGCATAAGTATGTACATCGACACCCAGAAAGACAGCCACTAC
CAGAAGAACGGCGGGGCCGAATGGGGCCATTGCAGGTATGTTCGTCGCCA
ACCCTGATATCTGCCTTCATCTTTCCCGCGCATGCCGGGCCGGAGCCTTG
ATGAAAAATTATTGAAAGCAAGCCATGCATTTTATTCATATTCGCTTATT
CCCTTTTTCGAACCTGCCGCTGTCATCTCCTTCTGCCCACTCTCTTCGTT
CCTCCCACTTCCCCCACCCGACCCCACCCTCAGGCCATACAGACCTGGCT
CGCTCCCGGCCCAGCTCCTCTTTTCCCGCCCCACCGCTCATCTTCCTCTT
CCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCTACAACAAGCAAGCCA
CTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGCAACTCTCCGTTTCCC
ATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCTCCGCCCTCTTCATTT
TCTTCAGCCACCCGTCTATCATCCTCATCCTTGTTGGCATCGCCTCCCTC
TCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCCTCCCTCCCTTCCTCA
CCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCGTGGCAGGCTGGATGC
TCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCACAGCTCTCTCCCCTGG
CCTGGCCGGGAAATCCATGCACAGCATCACGCCCTCCCCTTCTACCACGT
CTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGGGCGCAGTAGCGTGTG
GGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTTTGGACCGTGCTGGGG
GTCAGTTCAGGGAGGGAGAAAGGAAAGGAGAGGGCAACGAGAGGGGGAGA
CGAGCGAGGGAAGGAAACAATAATTTGATATTTGCATGATCTTGAAAGGA
TCAGTCATCATTGTCCGCCTCATTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCCAGACCTACTGGCTCATGGGACTGTTGTACGAGTGGGCACA
CTTCAGCGTGCACACTCGCGTTCGACCCCGCACTGCTCTCGGCAAGGCAG
TCAAAGCCCACCACACCAAGCACCACCTGAAGTGTGACGGCCTTTGGTTC
GCCTTTTCTTGGCCATGGATCGACACCGTGATGGGGACGGTTCCAGGGAG
GGAGGGAGGGTGAAGAAAG
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Coding sequence (CDS) from alignment at scaffold_46:14778..16146+

>mRNA_10064 ID=mRNA_10064|Name=jgi.p|Nanoce1779_2|609554|organism=Nannochloropsis oceanica|type=CDS|length=2349bp|location=Sequence derived from alignment at scaffold_46:14778..16146+ (Nannochloropsis oceanica)
ATGGGGCCATTGCAGGCCATACAGACCTGGCTCGCTCCCGGCCCAGCTCC
TCTTTTCCCGCCCCACCGCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCT
CTCCTGTTCCAAGCTCTACAACAAGCAAGCCACTGGTCGACGTCCGTCAG
CTGTCCTCAGAAGACGCAACTCTCCGTTTCCCATCCGCCGATTTCGCAGT
CCCCACCACCCTGCCCTCCGCCCTCTTCATTTTCTTCAGCCACCCGTCTA
TCATCCTCATCCTTGTTGGCATCGCCTCCCTCTCCACCGGCCGCCTCCTC
TCCTCACCCCTCCTTCCTCCCTCCCTTCCTCACCTCCTCTTCGAGCTGAC
CCTCATCCCCTTGACCGTGGCAGGCTGGATGCTCCAAGAATGGTCTCTCC
ACCGCTTCCTGCTCCACAGCTCTCTCCCCTGGCCTGGCCGGGAAATCCAT
GCACAGCATCACGCCCTCCCCTTCTACCACGTCTCGATCGACCCTCCCCT
TCTGGTGGCGGTATGGGGCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGC
TGCCCCAGCCGTGGGTTTGGACCGTGCTGGGGACCTACTGGCTCATGGGA
CTGTTGTACGAGTGGGCACACTTCAGCGTGCACACTCGCGTTCGACCCCG
CACTGCTCTCGGCAAGGCAGTCAAAGCCCACCACACCAAGCACCACCTGA
AGTGTGACGGCCTTTGGTTCGCCTTTTCTTGGCCATGGATCGACACCGTG
ATGGGGACGGTTCCAGGGAGGGAGGGAGGGTGAATGGGGCCATTGCAGGC
CATACAGACCTGGCTCGCTCCCGGCCCAGCTCCTCTTTTCCCGCCCCACC
GCTCATCTTCCTCTTCCTCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCT
ACAACAAGCAAGCCACTGGTCGACGTCCGTCAGCTGTCCTCAGAAGACGC
AACTCTCCGTTTCCCATCCGCCGATTTCGCAGTCCCCACCACCCTGCCCT
CCGCCCTCTTCATTTTCTTCAGCCACCCGTCTATCATCCTCATCCTTGTT
GGCATCGCCTCCCTCTCCACCGGCCGCCTCCTCTCCTCACCCCTCCTTCC
TCCCTCCCTTCCTCACCTCCTCTTCGAGCTGACCCTCATCCCCTTGACCG
TGGCAGGCTGGATGCTCCAAGAATGGTCTCTCCACCGCTTCCTGCTCCAC
AGCTCTCTCCCCTGGCCTGGCCGGGAAATCCATGCACAGCATCACGCCCT
CCCCTTCTACCACGTCTCGATCGACCCTCCCCTTCTGGTGGCGGTATGGG
GCGCAGTAGCGTGTGGGGCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTT
TGGACCGTGCTGGGGACCTACTGGCTCATGGGACTGTTGTACGAGTGGGC
ACACTTCAGCGTGCACACTCGCGTTCGACCCCGCACTGCTCTCGGCAAGG
CAGTCAAAGCCCACCACACCAAGCACCACCTGAAGTGTGACGGCCTTTGG
TTCGCCTTTTCTTGGCCATGGATCGACACCGTGATGGGGACGGTTCCAGG
GAGGGAGGGAGGGTGAATGGGGCCATTGCAGGCCATACAGACCTGGCTCG
CTCCCGGCCCAGCTCCTCTTTTCCCGCCCCACCGCTCATCTTCCTCTTCC
TCCCCCTCCTTCCCCTCTCCTGTTCCAAGCTCTACAACAAGCAAGCCACT
GGTCGACGTCCGTCAGCTGTCCTCAGAAGACGCAACTCTCCGTTTCCCAT
CCGCCGATTTCGCAGTCCCCACCACCCTGCCCTCCGCCCTCTTCATTTTC
TTCAGCCACCCGTCTATCATCCTCATCCTTGTTGGCATCGCCTCCCTCTC
CACCGGCCGCCTCCTCTCCTCACCCCTCCTTCCTCCCTCCCTTCCTCACC
TCCTCTTCGAGCTGACCCTCATCCCCTTGACCGTGGCAGGCTGGATGCTC
CAAGAATGGTCTCTCCACCGCTTCCTGCTCCACAGCTCTCTCCCCTGGCC
TGGCCGGGAAATCCATGCACAGCATCACGCCCTCCCCTTCTACCACGTCT
CGATCGACCCTCCCCTTCTGGTGGCGGTATGGGGCGCAGTAGCGTGTGGG
GCGGGCTGGCTCATGCTGCCCCAGCCGTGGGTTTGGACCGTGCTGGGGAC
CTACTGGCTCATGGGACTGTTGTACGAGTGGGCACACTTCAGCGTGCACA
CTCGCGTTCGACCCCGCACTGCTCTCGGCAAGGCAGTCAAAGCCCACCAC
ACCAAGCACCACCTGAAGTGTGACGGCCTTTGGTTCGCCTTTTCTTGGCC
ATGGATCGACACCGTGATGGGGACGGTTCCAGGGAGGGAGGGAGGGTGA
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Synonyms
Publications