jgi.p|Nanoce1779_2|609552, mRNA_10063 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609552
Unique NamemRNA_10063
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1473
Alignment locationscaffold_46:12881..14821 -

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Properties
Property NameValue
TranscriptId609638
TrackFilteredModels2
ProteinId609552
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:12881..14821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609552gene_10063Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609552mRNA_10063-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10063CDS_10063Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10063 ID=mRNA_10063|Name=jgi.p|Nanoce1779_2|609552|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
GGGGTGTTGACGGAAGGACAAAACATGCCCTGCTTATGAGAGCGCCTCCA
GCAGCTGCTGCTGCTGCTGCTGCTGCTGTGGTGCAACAGGCAATGTTAGC
CATCCTGTGTGTTCATGTAGATGTACGTATTGAGTTGGCAATAAATGCGT
AAAGGCGAGCTGCTGCCTGTTGTGGGATAAAATGGGGTATGGACTCGGAG
TCATCAATCGAGCCGTTGATTTCTCACAACATTCTTGTAGACGAAGTTAT
TATTACTATATATATATACCCTCCTTCTCTCTCGCTCTATAACTACAGGT
GAATTGTCTTTCTCTGTTCAATATTTCCTGCTCTGTTCATTCTTGGAGGA
GCCATGCTGGCTTTTCTTTCCCTGAGGAGTACTGACGAGCCCTTTCGCAT
TCAATCAAGAGACTTGTGTACCATAGCGTTACGACACTCGGCCAACCGTG
CTTACACGTTCTGTGTCTGTGTGTGTGTCTGGTTCGGATCCGGCACCTAC
TCGAGGCTCGGAACACTCAGGCGTACAGAAGGGCGCCCGAGAAGGGGTCA
TTGTCGTCGTCTCATTGCTGGCTGCAATACCAAAGTTATGTCAGAACCTC
TCGTCGACAGAGAGCATGCTTTGCTTGATTGCCTCGTACGTTTCTCGTGT
GCTTACCACACATGCGCCGTGCTCTTCAGGCATGTTCCAATCATGCCAAT
TGCTCTAGCCTGCGACAACGAATAAACAGGCGCCATGATGACGTGGGGGC
TGTATGAGTGCAAAGGCGAGCTAAAGCCTTAGTGTATGTGTTGTCAGTGT
GATTGTCGTGCCCCATCACACGACGTCGCTTCGCTTGGCAATTTTCTTAT
TATCCATCCCTCCCCTTCCGTTCCCTCATAGAGCACAGGCCCCCCACCGA
GATGCCAGCCATCAGCCACGTCTCTACCTGGTCACCAGGCTTTCTCCTAC
TCCTTGTCCTTCTACTTGTGCTTCCATTCCCCTACGCTTTTCTTGTTCCC
TCCCCCTTTTATCCGAACAGGAGCACCAGACGGCACGCGTCAGACATTGG
CCCTGCCCCTGGCCCTGCCCCTGGCCCTGCTTCTGGCCCACCCGACCTTC
CCCCTCCTCCAAGCAAGGGCATTCTAACCATTGTTGGCCCAGACGGGAAG
GAGCTCTCAGTGCTCGAGGCCCAGCCGGGCGCCAACCTGAGGAAGACGCT
GCAGGCGGCCAAGGTGGACGTATACGACTTGATAAGTAAAATGACCAACT
GCAATGGGGCGGGCCAGTGCGGCACCTGCGTGGTGAAAGTAACTAGCCCC
TCGTGGGGCATCCGCAGCGAGTACGAGGCGGCCAAGATCCTCAAAGGGCG
CAAATTCGGCGACGAAGAGGAGTACCGGCTGGCGTGCCAAACCTCCGTAG
AGGCGGGGGAGGCAACAATCATGGTGAGGCCGCCCAAGAAGGGGAAGTAA
GGGGAAGAGGGGAGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|609552

>mRNA_10063-protein ID=mRNA_10063-protein|Name=jgi.p|Nanoce1779_2|609552|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MPAISHVSTWSPGFLLLLVLLLVLPFPYAFLVPSPFYPNRSTRRHASDIG
PAPGPAPGPASGPPDLPPPPSKGILTIVGPDGKELSVLEAQPGANLRKTL
QAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGR
KFGDEEEYRLACQTSVEAGEATIMVRPPKKGK*
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mRNA from alignment at scaffold_46:12881..14821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10063 ID=mRNA_10063|Name=jgi.p|Nanoce1779_2|609552|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at scaffold_46:12881..14821- (Nannochloropsis oceanica)
GGGGTGTTGACGGAAGGACAAAACATGCCCTGCTTATGAGAGCGCCTCCA
GCAGCTGCTGCTGCTGCTGCTGCTGCTGTGGTGCAACAGGCAATGTTAGC
CATCCTGTGTGTTCATGTAGATGTACGTATTGAGTTGGCAATAAATGCGT
AAAGGCGAGCTGCTGCCTGTTGTGGGATAAAATGGGGTATGGACTCGGAG
TCATCAATCGAGCCGTTGATTTCTCACAACATTCTTGTAGACGAAGTTAT
TATTACTATATATATATACCCTCCTTCTCTCTCGCTCTATAACTACAGGT
GAATTGTCTTTCTCTGTTCAATATTTCCTGCTCTGTTCATTCTTGGAGGA
GCCATGCTGGCTTTTCTTTCCCTGAGGAGTACTGACGAGCCCTTTCGCAT
TCAATCAAGAGACTTGTGTACCATAGCGTTACGACACTCGGCCAACCGTG
CTTACACGTTCTGTGTCTGTGTGTGTGTCTGGTTCGGATCCGGCACCTAC
TCGAGGCTCGGAACACTCAGGCGTACAGAAGGGCGCCCGAGAAGGGGTCA
TTGTCGTCGTCTCATTGCTGGCTGCAATACCAAAGTTATGTCAGAACCTC
TCGTCGACAGAGAGCATGCTTTGCTTGATTGCCTCGTACGTTTCTCGTGT
GCTTACCACACATGCGCCGTGCTCTTCAGGCATGTTCCAATCATGCCAAT
TGCTCTAGCCTGCGACAACGAATAAACAGGCGCCATGATGACGTGGGGGC
TGTATGAGTGCAAAGGCGAGCTAAAGCCTTAGTGTATGTGTTGTCAGTGT
GATTGTCGTGCCCCATCACACGACGTCGCTTCGCTTGGCAATTTTCTTAT
TATCCATCCCTCCCCTTCCGTTCCCTCATAGAGCACAGGCCCCCCACCGA
GATGCCAGCCATCAGCCACGTCTCTACCTGGTCACCAGGCTTTCTCCTAC
TCCTTGTCCTTCTACTTGTGCTTCCATTCCCCTACGCTTTTCTTGTTCCC
TCCCCCTTTTATCCGAACAGGAGCACCAGACGGCACGCGTCAGACATTGG
CCCTGCCCCTGGCCCTGCCCCTGGCCCTGCTTCTGGCCCACCCGACCTTC
CCCCTCCTCCAAGGTACGTACATGCTTGCAATCACTGCGTGGTGACGAGT
GCTTCAAGAAGGGCCTCAGAGTGGATGTGCGATCGGTAGGGTAGAGTGGG
AGAGGGATGTCAAAGCGCGCAGCGTGAAGCATGCGTACAAATATGCCTGC
CGGCATTGGGAGGGTGACGACGACAACATAATGGTACCACAGCGGAACTT
CTGTCCCCTCACGGGTTAGCCATTGATGTGACAGTCACCGCAAAGCCATA
TGCCTCCATCCCTCCCGTCACCGCTCCCTTCTCCCCTCCCCAGCAAGGGC
ATTCTAACCATTGTTGGCCCAGACGGGAAGGAGCTCTCAGTGCTCGAGGC
CCAGCCGGGCGCCAACCTGAGGAAGACGCTGCAGGCGGCCAAGGTGGACG
TATACGACTTGATAAGTAAAATGACCAACTGCAATGGGTGAGGAGAGGGG
AGGAAGGCGGGTGGATGTCAGGGAAGAAGCAGGGGATGATGTCCCGCTGA
CCCATATTACTGTGTTGGTGCGTCCCCTGTCTCTTCCTCAAGTCGTCATC
TTTTACGGTCGCGAGTTAATGCGTCTCTGACCCCTCATCCCTCCTCATCT
CCCTTTCTCATTTCTCATCCTTCAGGGCGGGCCAGTGCGGCACCTGCGTG
GTGAAAGTAACTAGCCCCTCGTGGGGCATCCGCAGCGAGTACGAGGCGGC
CAAGATCCTCAAAGGGCGCAAATTCGGCGACGAAGAGGAGTACCGGCTGG
CGTGCCAAACCTCCGTAGAGGCGGGGGAGGCAACAATCATGGTGAGGCCG
CCCAAGAAGGGGAAGTAAGGGGAAGAGGGGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_46:12881..14821-

>mRNA_10063 ID=mRNA_10063|Name=jgi.p|Nanoce1779_2|609552|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_46:12881..14821- (Nannochloropsis oceanica)
GGCGGGCCAGTGCGGCACCTGCGTGGTGAAAGTAACTAGCCCCTCGTGGG
GCATCCGCAGCGAGTACGAGGCGGCCAAGATCCTCAAAGGGCGCAAATTC
GGCGACGAAGAGGAGTACCGGCTGGCGTGCCAAACCTCCGTAGAGGCGGG
GGAGGCAACAATCATGGTGAGGCCGCCCAAGAAGGGGAAGTAACAAGGGC
ATTCTAACCATTGTTGGCCCAGACGGGAAGGAGCTCTCAGTGCTCGAGGC
CCAGCCGGGCGCCAACCTGAGGAAGACGCTGCAGGCGGCCAAGGTGGACG
TATACGACTTGATAAGTAAAATGACCAACTGCAATGGATGCCAGCCATCA
GCCACGTCTCTACCTGGTCACCAGGCTTTCTCCTACTCCTTGTCCTTCTA
CTTGTGCTTCCATTCCCCTACGCTTTTCTTGTTCCCTCCCCCTTTTATCC
GAACAGGAGCACCAGACGGCACGCGTCAGACATTGGCCCTGCCCCTGGCC
CTGCCCCTGGCCCTGCTTCTGGCCCACCCGACCTTCCCCCTCCTCCAAGG
GCGGGCCAGTGCGGCACCTGCGTGGTGAAAGTAACTAGCCCCTCGTGGGG
CATCCGCAGCGAGTACGAGGCGGCCAAGATCCTCAAAGGGCGCAAATTCG
GCGACGAAGAGGAGTACCGGCTGGCGTGCCAAACCTCCGTAGAGGCGGGG
GAGGCAACAATCATGGTGAGGCCGCCCAAGAAGGGGAAGTAACAAGGGCA
TTCTAACCATTGTTGGCCCAGACGGGAAGGAGCTCTCAGTGCTCGAGGCC
CAGCCGGGCGCCAACCTGAGGAAGACGCTGCAGGCGGCCAAGGTGGACGT
ATACGACTTGATAAGTAAAATGACCAACTGCAATGGATGCCAGCCATCAG
CCACGTCTCTACCTGGTCACCAGGCTTTCTCCTACTCCTTGTCCTTCTAC
TTGTGCTTCCATTCCCCTACGCTTTTCTTGTTCCCTCCCCCTTTTATCCG
AACAGGAGCACCAGACGGCACGCGTCAGACATTGGCCCTGCCCCTGGCCC
TGCCCCTGGCCCTGCTTCTGGCCCACCCGACCTTCCCCCTCCTCCAAGGG
CGGGCCAGTGCGGCACCTGCGTGGTGAAAGTAACTAGCCCCTCGTGGGGC
ATCCGCAGCGAGTACGAGGCGGCCAAGATCCTCAAAGGGCGCAAATTCGG
CGACGAAGAGGAGTACCGGCTGGCGTGCCAAACCTCCGTAGAGGCGGGGG
AGGCAACAATCATGGTGAGGCCGCCCAAGAAGGGGAAGTAACAAGGGCAT
TCTAACCATTGTTGGCCCAGACGGGAAGGAGCTCTCAGTGCTCGAGGCCC
AGCCGGGCGCCAACCTGAGGAAGACGCTGCAGGCGGCCAAGGTGGACGTA
TACGACTTGATAAGTAAAATGACCAACTGCAATGGATGCCAGCCATCAGC
CACGTCTCTACCTGGTCACCAGGCTTTCTCCTACTCCTTGTCCTTCTACT
TGTGCTTCCATTCCCCTACGCTTTTCTTGTTCCCTCCCCCTTTTATCCGA
ACAGGAGCACCAGACGGCACGCGTCAGACATTGGCCCTGCCCCTGGCCCT
GCCCCTGGCCCTGCTTCTGGCCCACCCGACCTTCCCCCTCCTCCAAG
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Synonyms
Publications