jgi.p|Nanoce1779_2|609546, mRNA_10062 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609546
Unique NamemRNA_10062
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length846
Alignment locationscaffold_46:11362..12710 +

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Properties
Property NameValue
TranscriptId609632
TrackFilteredModels2
ProteinId609546
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:11362..12710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609546gene_10062Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609546mRNA_10062-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10062CDS_10062Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10062 ID=mRNA_10062|Name=jgi.p|Nanoce1779_2|609546|organism=Nannochloropsis oceanica|type=mRNA|length=846bp
CAGGCAGAGAAGCCATGGTGCGCCCTAGCATGGGATCCTCAGCCGCCGTA
GCTGCCTCGTTGAAAAAGGTCCGAAAGGGCAAAGGGTCCTTGTGGTCGTC
ACTTCTTCTCAAGTACCCTGGTGCCGTAGTAATGGGCCTCCTGTCCCTTG
CCTTTTGCGTGGTCATCTCCCTTTGGCAGCCACTCTCTCCGGAGCAATTT
GCAAGGCAATGGTTTGAGAATGGTGGCTTCCTTCCACAGTGCAATCAAGC
TCTCGCTTTTGCTAAAGGGGCCTCGGAATTGCGGTGCTACGCCAAGGCAA
CACTGGCAGATAGGAGCACGAACAGAGGCTTGTTCGGCCTCAATAGTTAC
AACAGCAGCCACGTCTCGGACGAATGCGCATACGACTGTGCCTGCTCCCT
TCGCATCCTCTCCTCCCTTGCCAACGACAGACTCGACCGTGAGGCTTTCT
CCCGGTACATCAATAATACCGGCGTAAACATCGAGGCCTTGCTGGGCGAC
GCAGGCCCTCCCTGCAATACCGTGGCAGAGGGGCTGATCCTGGAGGGGTG
GAGCATGCTGCAGATCCAGGGCGGGAGGCTGGCGGAGTAGCAGTGAGGGA
AGACAAGAGAAAGGGAAGGAGGGAGGGATGCAAGAAGGTAGGGAGCATGG
AGGCTTTGGCACGGGAAAGGGCTTTCTAAAAGGGCAAAGGAGAGTGTTGA
GTGAGAGGGCAGGGAGAGGGTCGCAAAGCCATGAGGGAGAGGAAGAGGGC
GATGGCTTCGGGGGAGAGCGTCGTGCACCTACATAAGAGAGGGACACGTA
CTCACAGTCTGTGAAACAAGATCCACACCTTGGCTCAACGTCAGTC
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protein sequence of jgi.p|Nanoce1779_2|609546

>mRNA_10062-protein ID=mRNA_10062-protein|Name=jgi.p|Nanoce1779_2|609546|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MVRPSMGSSAAVAASLKKVRKGKGSLWSSLLLKYPGAVVMGLLSLAFCVV
ISLWQPLSPEQFARQWFENGGFLPQCNQALAFAKGASELRCYAKATLADR
STNRGLFGLNSYNSSHVSDECAYDCACSLRILSSLANDRLDREAFSRYIN
NTGVNIEALLGDAGPPCNTVAEGLILEGWSMLQIQGGRLAE*
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mRNA from alignment at scaffold_46:11362..12710+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10062 ID=mRNA_10062|Name=jgi.p|Nanoce1779_2|609546|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp|location=Sequence derived from alignment at scaffold_46:11362..12710+ (Nannochloropsis oceanica)
CAGGCAGAGAAGCCATGGTGCGCCCTAGCATGGGATCCTCAGCCGCCGTA
GCTGCCTCGTTGAAAAAGGTCCGAAAGGGCAAAGGGTCCTTGTGGTCGTC
ACTTCTTCTCAAGTACCCTGGTGCCGTAGTAATGGGCCTCCTGTCCCTTG
CCTTTTGCGTGGTCATCTCCCTTTGGCAGCCACTCTCTCCGGAGCAATTT
GCAAGGCAATGGTACGTATGTAGTAAGTAGGGACTAAAAAGAAGGGTTAC
AAGTCATGTACGAGGATCGCTCTGAGAGAAGTGAGAGAGCGGGAAAGCTG
ACAGACTGCTGCTCTGCACGATTCCCTCCCGCCCTCTTCCCCCCTCCGAC
GCTATCCCCTCCCCTACATATTTATCGATCAGGTTTGAGAATGGTGGCTT
CCTTCCACAGTGCAATCAAGCTCTCGCTTTTGCTAAAGGGGCCTCGGAAT
TGCGGTGCTACGCCAAGGCAACACTGGCAGATAGGAGCACGAACAGAGGT
ACGTTGTGACCCAAACACAAGGGAGTGGAAAGAGGAGTCGTAAGACATTC
GAGAAAGGAGATGACTTGTAATCCCTTGTCATAATTGACGGAAGTGAGAT
AAGGAGGTGGGGTAAGATAAAGGGCGAGGAATATAGCATACCTGTTGATT
GACATAACTGATCCAACCACTTACAGGCTTGTTCGGCCTCAATAGTTACA
ACAGCAGCCACGTCTCGGACGAATGCGCATGTACGTATTCAAGTGATATA
AGCTCTGCTTGATCTTCCCCTTTCCCTTCCCCTCCTACACTACATCCCTC
TTCCTCCCTGCCTCTTTCCACTCATCTACTACCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTTCTCATTCCTTTCCTCCTTCAGACGACTGTGCCTGCTC
CCTTCGCATCCTCTCCTCCCTTGCCAACGACAGACTCGACCGTGAGGCTT
TCTCCCGGTACATCAATAATACCGGCGTAAACATCGAGGCCTTGCTGGGC
GACGCAGGCCCTCCCTGCAATACCGTGGCAGAGGGGCTGATCCTGGAGGG
GTGGAGCATGCTGCAGATCCAGGGCGGGAGGCTGGCGGAGTAGCAGTGAG
GGAAGACAAGAGAAAGGGAAGGAGGGAGGGATGCAAGAAGGTAGGGAGCA
TGGAGGCTTTGGCACGGGAAAGGGCTTTCTAAAAGGGCAAAGGAGAGTGT
TGAGTGAGAGGGCAGGGAGAGGGTCGCAAAGCCATGAGGGAGAGGAAGAG
GGCGATGGCTTCGGGGGAGAGCGTCGTGCACCTACATAAGAGAGGGACAC
GTACTCACAGTCTGTGAAACAAGATCCACACCTTGGCTCAACGTCAGTC
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Coding sequence (CDS) from alignment at scaffold_46:11362..12710+

>mRNA_10062 ID=mRNA_10062|Name=jgi.p|Nanoce1779_2|609546|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_46:11362..12710+ (Nannochloropsis oceanica)
ATGGTGCGCCCTAGCATGGGATCCTCAGCCGCCGTAGCTGCCTCGTTGAA
AAAGGTCCGAAAGGGCAAAGGGTCCTTGTGGTCGTCACTTCTTCTCAAGT
ACCCTGGTGCCGTAGTAATGGGCCTCCTGTCCCTTGCCTTTTGCGTGGTC
ATCTCCCTTTGGCAGCCACTCTCTCCGGAGCAATTTGCAAGGCAATGGTT
TGAGAATGGTGGCTTCCTTCCACAGTGCAATCAAGCTCTCGCTTTTGCTA
AAGGGGCCTCGGAATTGCGGTGCTACGCCAAGGCAACACTGGCAGATAGG
AGCACGAACAGAGGCTTGTTCGGCCTCAATAGTTACAACAGCAGCCACGT
CTCGGACGAATGCGCATACGACTGTGCCTGCTCCCTTCGCATCCTCTCCT
CCCTTGCCAACGACAGACTCGACCGTGAGGCTTTCTCCCGGTACATCAAT
AATACCGGCGTAAACATCGAGGCCTTGCTGGGCGACGCAGGCCCTCCCTG
CAATACCGTGGCAGAGGGGCTGATCCTGGAGGGGTGGAGCATGCTGCAGA
TCCAGGGCGGGAGGCTGGCGGAGTAGATGGTGCGCCCTAGCATGGGATCC
TCAGCCGCCGTAGCTGCCTCGTTGAAAAAGGTCCGAAAGGGCAAAGGGTC
CTTGTGGTCGTCACTTCTTCTCAAGTACCCTGGTGCCGTAGTAATGGGCC
TCCTGTCCCTTGCCTTTTGCGTGGTCATCTCCCTTTGGCAGCCACTCTCT
CCGGAGCAATTTGCAAGGCAATGGTTTGAGAATGGTGGCTTCCTTCCACA
GTGCAATCAAGCTCTCGCTTTTGCTAAAGGGGCCTCGGAATTGCGGTGCT
ACGCCAAGGCAACACTGGCAGATAGGAGCACGAACAGAGGCTTGTTCGGC
CTCAATAGTTACAACAGCAGCCACGTCTCGGACGAATGCGCATACGACTG
TGCCTGCTCCCTTCGCATCCTCTCCTCCCTTGCCAACGACAGACTCGACC
GTGAGGCTTTCTCCCGGTACATCAATAATACCGGCGTAAACATCGAGGCC
TTGCTGGGCGACGCAGGCCCTCCCTGCAATACCGTGGCAGAGGGGCTGAT
CCTGGAGGGGTGGAGCATGCTGCAGATCCAGGGCGGGAGGCTGGCGGAGT
AGATGGTGCGCCCTAGCATGGGATCCTCAGCCGCCGTAGCTGCCTCGTTG
AAAAAGGTCCGAAAGGGCAAAGGGTCCTTGTGGTCGTCACTTCTTCTCAA
GTACCCTGGTGCCGTAGTAATGGGCCTCCTGTCCCTTGCCTTTTGCGTGG
TCATCTCCCTTTGGCAGCCACTCTCTCCGGAGCAATTTGCAAGGCAATGG
TTTGAGAATGGTGGCTTCCTTCCACAGTGCAATCAAGCTCTCGCTTTTGC
TAAAGGGGCCTCGGAATTGCGGTGCTACGCCAAGGCAACACTGGCAGATA
GGAGCACGAACAGAGGCTTGTTCGGCCTCAATAGTTACAACAGCAGCCAC
GTCTCGGACGAATGCGCATACGACTGTGCCTGCTCCCTTCGCATCCTCTC
CTCCCTTGCCAACGACAGACTCGACCGTGAGGCTTTCTCCCGGTACATCA
ATAATACCGGCGTAAACATCGAGGCCTTGCTGGGCGACGCAGGCCCTCCC
TGCAATACCGTGGCAGAGGGGCTGATCCTGGAGGGGTGGAGCATGCTGCA
GATCCAGGGCGGGAGGCTGGCGGAGTAGATGGTGCGCCCTAGCATGGGAT
CCTCAGCCGCCGTAGCTGCCTCGTTGAAAAAGGTCCGAAAGGGCAAAGGG
TCCTTGTGGTCGTCACTTCTTCTCAAGTACCCTGGTGCCGTAGTAATGGG
CCTCCTGTCCCTTGCCTTTTGCGTGGTCATCTCCCTTTGGCAGCCACTCT
CTCCGGAGCAATTTGCAAGGCAATGGTTTGAGAATGGTGGCTTCCTTCCA
CAGTGCAATCAAGCTCTCGCTTTTGCTAAAGGGGCCTCGGAATTGCGGTG
CTACGCCAAGGCAACACTGGCAGATAGGAGCACGAACAGAGGCTTGTTCG
GCCTCAATAGTTACAACAGCAGCCACGTCTCGGACGAATGCGCATACGAC
TGTGCCTGCTCCCTTCGCATCCTCTCCTCCCTTGCCAACGACAGACTCGA
CCGTGAGGCTTTCTCCCGGTACATCAATAATACCGGCGTAAACATCGAGG
CCTTGCTGGGCGACGCAGGCCCTCCCTGCAATACCGTGGCAGAGGGGCTG
ATCCTGGAGGGGTGGAGCATGCTGCAGATCCAGGGCGGGAGGCTGGCGGA
GTAG
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Synonyms
Publications