jgi.p|Nanoce1779_2|316019, mRNA_10061 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|316019
Unique NamemRNA_10061
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1031
Alignment locationscaffold_46:9839..11392 -

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Properties
Property NameValue
TranscriptId316105
TrackFilteredModels2
ProteinId316019
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:9839..11392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|316019gene_10061Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|316019mRNA_10061-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10061CDS_10061Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10061 ID=mRNA_10061|Name=jgi.p|Nanoce1779_2|316019|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
ATGCTAGGGCGCACCATGGCTTCTCTGCCTGCAGTCAAGGGTTTGTGTGA
GGCAGATGGGTAGCATGGCCGAGCAAGTTGCAGTTTTTATGGGCGAGTTG
GCGACGAAGTGTGGTCATACCTAGAAACTCAAGTACTCCTGTTGTATTAA
CTGTAGCCATACTTGACAGAGCAGGCAAGATGGAAATTATTATGTATTTT
ATCTGGGGAATCATATACATAATCTCAGGCTTTGGTGTCCTGGCCTGTGC
CTCTATCGTTCTTGTCATGGCCCGAGCCTGCCTCTCCTCGGGTAAGCATA
TCCTTGCCGGCCTCCCTCCTCGCTTCGGAGACATCGAGGCCGCCAAGACT
ACCGAGCGCTTGCGCGGAAAAAAAAAAAAAGCAGCAACAGCAACAGCAAC
AGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAGGAGGGAGGGGAGAAGGAAGGACGGAGGAAGAGGCGGACACG
CCGTCGTCGCTGGGGATGGAGGACACAGGGTTTGTGGATGTAGAGATTGG
GCCGGAGGAGGAGAAGGAAGAAGGAAGGGAGGGTAGGGAGAGGAGGGAGG
GAGATAGGGGAGTGGAGCCTAGCAGCGGCGGGATGGTGGTGGAGTTGTCG
GTCATGGCGAGTGGAAGCAAGGTGCTGGCGCAGTAGGGGGAGGGAGGGAG
AGTGGGGAGAAAGGGAGAGAGTGGAGGGAGGGAGAGACATATGGAGAGAG
AGAGGAAGGAAGGGAAGGAGAAAGATTGACGAAGAAGAAGGTTTTGTAAG
GCGGGTTGGCGGTGTCAACGTGATGAGGGAGGAAGGAGGGAGGGACAGAA
AGAGGAGGAGCAGCAGTAAGATCATTCAAGCAAAAGACATGTTAGAAAAA
GTGAGACTTGGAAAGAGAGTAAGACGCTGTTTGACCACTGAGTGCAAGAA
TACAAATATAAGAGGAAGTCAGGAGAGAGGGGGGAATGGAGTGAGCGAGG
CAGGGGAAGGAAAGTGAATTCGGAAAAAGAG
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protein sequence of jgi.p|Nanoce1779_2|316019

>mRNA_10061-protein ID=mRNA_10061-protein|Name=jgi.p|Nanoce1779_2|316019|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MEIIMYFIWGIIYIISGFGVLACASIVLVMARACLSSGKHILAGLPPRFG
DIEAAKTTERLRGKKKKAATATATATATATAAAAAAAAAAAATGGRGEGR
TEEEADTPSSLGMEDTGFVDVEIGPEEEKEEGREGRERREGDRGVEPSSG
GMVVELSVMASGSKVLAQ*
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mRNA from alignment at scaffold_46:9839..11392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10061 ID=mRNA_10061|Name=jgi.p|Nanoce1779_2|316019|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at scaffold_46:9839..11392- (Nannochloropsis oceanica)
ATGCTAGGGCGCACCATGGCTTCTCTGCCTGCAGTCAAGGGTTTGTGTGA
GGCAGATGGGTAGCATGGCCGAGCAAGTTGCAGTTTTTATGGGCGAGTTG
GCGACGAAGTGTGGTCATACCTAGAAACTCAAGTACTCCTGTTGTATTAA
CTGTAGCCATACTTGACAGGTAAGTGCATGACTCTTGTATGCATGTGCTT
AGTCAGCGTGGAAGTTGCGAGCGCCTTTTCCTGGTAATTTCCTGTCTAAC
ATTTTACATTGCTTTGAGGCATTCCAACCCCGCCATGTCCTTATTTTACC
GTGCCTCAGGCACAAAAGGTTTCACACCATCACGACGACGACAGGGAGGT
GGAGGTCTGCAAGGCACAATATGTGGACATAGCTGCTGTTTGTGCACGAA
ATGAACTTTGTCTTTTATTTCAGGAAGGAAAGACTCCTACGAAAGCCGCG
CATGGACGTCGTGTCAAGGCTGACGCTCACTCCTCCCTCGCTCCAATTCA
CAAACACAGAGCAGGCAAGATGGAAATTATTATGTATTTTATCTGGGGAA
TCATATACATAATCTCAGGCTTTGGTGTCCTGGCCTGTGCCTCTATCGTT
CTTGTGTACGTATTTCGGGTTTGCGCCCTCCCCGTCCTCCTCCTTGTTGT
CCCTTCTTGCTAGCTACGCCATGCCCCTTCTCACTGCCACCTATTGGTTG
TGCAATTCCCTGGCAAGCAACTCTGTTAAATATTGCCCATGTCTTAACAG
TTCCTTTATTACCTCCCAACCCTCTCCTCCCCAACCAGCATGGCCCGAGC
CTGCCTCTCCTCGGGTAAGCATATCCTTGCCGGCCTCCCTCCTCGCTTCG
GAGACATCGAGGCCGCCAAGACTACCGAGCGCTTGCGCGGAAAAAAAAAA
AAAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGGGAGGGGAGAAGGAA
GGACGGAGGAAGAGGCGGACACGCCGTCGTCGCTGGGGATGGAGGACACA
GGGTTTGTGGATGTAGAGATTGGGCCGGAGGAGGAGAAGGAAGAAGGAAG
GGAGGGTAGGGAGAGGAGGGAGGGAGATAGGGGAGTGGAGCCTAGCAGCG
GCGGGATGGTGGTGGAGTTGTCGGTCATGGCGAGTGGAAGCAAGGTGCTG
GCGCAGTAGGGGGAGGGAGGGAGAGTGGGGAGAAAGGGAGAGAGTGGAGG
GAGGGAGAGACATATGGAGAGAGAGAGGAAGGAAGGGAAGGAGAAAGATT
GACGAAGAAGAAGGTTTTGTAAGGCGGGTTGGCGGTGTCAACGTGATGAG
GGAGGAAGGAGGGAGGGACAGAAAGAGGAGGAGCAGCAGTAAGATCATTC
AAGCAAAAGACATGTTAGAAAAAGTGAGACTTGGAAAGAGAGTAAGACGC
TGTTTGACCACTGAGTGCAAGAATACAAATATAAGAGGAAGTCAGGAGAG
AGGGGGGAATGGAGTGAGCGAGGCAGGGGAAGGAAAGTGAATTCGGAAAA
AGAG
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Coding sequence (CDS) from alignment at scaffold_46:9839..11392-

>mRNA_10061 ID=mRNA_10061|Name=jgi.p|Nanoce1779_2|316019|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_46:9839..11392- (Nannochloropsis oceanica)
CATGGCCCGAGCCTGCCTCTCCTCGGGTAAGCATATCCTTGCCGGCCTCC
CTCCTCGCTTCGGAGACATCGAGGCCGCCAAGACTACCGAGCGCTTGCGC
GGAAAAAAAAAAAAAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGGGA
GGGGAGAAGGAAGGACGGAGGAAGAGGCGGACACGCCGTCGTCGCTGGGG
ATGGAGGACACAGGGTTTGTGGATGTAGAGATTGGGCCGGAGGAGGAGAA
GGAAGAAGGAAGGGAGGGTAGGGAGAGGAGGGAGGGAGATAGGGGAGTGG
AGCCTAGCAGCGGCGGGATGGTGGTGGAGTTGTCGGTCATGGCGAGTGGA
AGCAAGGTGCTGGCGCAGTAGATGGAAATTATTATGTATTTTATCTGGGG
AATCATATACATAATCTCAGGCTTTGGTGTCCTGGCCTGTGCCTCTATCG
TTCTTGTCATGGCCCGAGCCTGCCTCTCCTCGGGTAAGCATATCCTTGCC
GGCCTCCCTCCTCGCTTCGGAGACATCGAGGCCGCCAAGACTACCGAGCG
CTTGCGCGGAAAAAAAAAAAAAGCAGCAACAGCAACAGCAACAGCAACAG
CAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
GGAGGGAGGGGAGAAGGAAGGACGGAGGAAGAGGCGGACACGCCGTCGTC
GCTGGGGATGGAGGACACAGGGTTTGTGGATGTAGAGATTGGGCCGGAGG
AGGAGAAGGAAGAAGGAAGGGAGGGTAGGGAGAGGAGGGAGGGAGATAGG
GGAGTGGAGCCTAGCAGCGGCGGGATGGTGGTGGAGTTGTCGGTCATGGC
GAGTGGAAGCAAGGTGCTGGCGCAGTAGATGGAAATTATTATGTATTTTA
TCTGGGGAATCATATACATAATCTCAGGCTTTGGTGTCCTGGCCTGTGCC
TCTATCGTTCTTGT
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Synonyms
Publications