jgi.p|Nanoce1779_2|609540, mRNA_10060 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609540
Unique NamemRNA_10060
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length505
Alignment locationscaffold_46:8207..9239 +

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Properties
Property NameValue
TranscriptId609626
TrackFilteredModels2
ProteinId609540
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:8207..9239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609540gene_10060Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609540mRNA_10060-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10060CDS_10060Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10060 ID=mRNA_10060|Name=jgi.p|Nanoce1779_2|609540|organism=Nannochloropsis oceanica|type=mRNA|length=505bp
AGTCACTGCTCATCCCTCTACAGGTCCCACACACAGCCACGATCACCAAC
GCGCTATGTCAGGAGGCGGCCCCGTCCTGAAACCCTCCACGCTGCGGGCC
TGGAAGGTGACCACGGGTGTGGCAACATTTTTCACGGGCTTTCAGCTCCT
GTTCCGGACAGACTACGGGGAGCGGGAGCACGTCTTCACACCGATCCAGC
GCTGGTACACGGACCAGGTGGACGCTCTGCTCGGAGTCGAAAGCGAGATT
GCCCGTCGGCTCAAGACCCCCACCCTCAGCCTCGCACCTTCTCAAGAAGG
GGAGGAACGAGCGCGGGTCGCATCAGTGGCAGCAGCTGCAGCAGCAGCAG
TTACAGACCCCCCCCTTCCGCCTGTGGGGGATGGGGAAGGAGAGGCAGGA
AGACAGGAAGGGGTGAAAGGATGGAAGAAATTCATCAAGTGGTGGTAGAT
TGGAAGAAATTCATAAGGAAAGCCAAAAGAATGAATGTATGTCACTAACG
GAAAG
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protein sequence of jgi.p|Nanoce1779_2|609540

>mRNA_10060-protein ID=mRNA_10060-protein|Name=jgi.p|Nanoce1779_2|609540|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MSGGGPVLKPSTLRAWKVTTGVATFFTGFQLLFRTDYGEREHVFTPIQRW
YTDQVDALLGVESEIARRLKTPTLSLAPSQEGEERARVASVAAAAAAAVT
DPPLPPVGDGEGEAGRQEGVKGWKKFIKWW*
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mRNA from alignment at scaffold_46:8207..9239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10060 ID=mRNA_10060|Name=jgi.p|Nanoce1779_2|609540|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_46:8207..9239+ (Nannochloropsis oceanica)
AGTCACTGCTCATCCCTCTACAGGTCCCACACACAGCCACGATCACCAAC
GCGCTATGTCAGGAGGCGGCCCCGTCCTGAAACCCTCCACGCTGCGGGCC
TGGTTTGTACCCTCTTTCATGTCTTTATCCTGTCTTGTCCTGTCTTGTCT
TGCACCTTCTGAGTGTACCCTCAGAGAGGTCATTATCATGGCGCCTGCCG
AAGCAGGCTGACACTGTACCTTGCAGAACATGCGGTGGCAATGTCAAGGT
CCCATATTTCATCCCGAGGCTTGTGCGGTTCTGACACGTGAGGACCCGTC
CTTGATCAAGATACAGTTTGCCCTTCCCCCATCCCCTTTGACCTCCTCCC
TCCCTTCCTCCCCAAATTTCTCTCTCCACGTTAATCATATTGCACATAGG
AAGGTGACCACGGGTGTGGCAACATTTTTCACGGGCTTTCAGCTCCTGTT
CCGGACAGACTACGGGGAGCGGGAGCACGTCTTCACACCGGTCCGTTGGA
GGGATTATCGAGTAGGGAGGAATGATGCGATGGGAGCCACGGGAGCCAGT
CACAACCATGCTCCCGCCGACCTCCATCAGTCACAACCCCTTCTCGCCTG
CCGTAACCGCGCACCATCATAGTCTGTCTCCTCGCTAGACCACCATCATT
TCATCCCCTCGCCTTATCCTGACCTAGAGCACCGCCATCCTCTCCCTGCT
TCCCTCCCTCCCTATCTTCAGATCCAGCGCTGGTACACGGACCAGGTGGA
CGCTCTGCTCGGAGTCGAAAGCGAGATTGCCCGTCGGCTCAAGACCCCCA
CCCTCAGCCTCGCACCTTCTCAAGAAGGGGAGGAACGAGCGCGGGTCGCA
TCAGTGGCAGCAGCTGCAGCAGCAGCAGTTACAGACCCCCCCCTTCCGCC
TGTGGGGGATGGGGAAGGAGAGGCAGGAAGACAGGAAGGGGTGAAAGGAT
GGAAGAAATTCATCAAGTGGTGGTAGATTGGAAGAAATTCATAAGGAAAG
CCAAAAGAATGAATGTATGTCACTAACGGAAAG
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Coding sequence (CDS) from alignment at scaffold_46:8207..9239+

>mRNA_10060 ID=mRNA_10060|Name=jgi.p|Nanoce1779_2|609540|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_46:8207..9239+ (Nannochloropsis oceanica)
ATGTCAGGAGGCGGCCCCGTCCTGAAACCCTCCACGCTGCGGGCCTGGAA
GGTGACCACGGGTGTGGCAACATTTTTCACGGGCTTTCAGCTCCTGTTCC
GGACAGACTACGGGGAGCGGGAGCACGTCTTCACACCGATCCAGCGCTGG
TACACGGACCAGGTGGACGCTCTGCTCGGAGTCGAAAGCGAGATTGCCCG
TCGGCTCAAGACCCCCACCCTCAGCCTCGCACCTTCTCAAGAAGGGGAGG
AACGAGCGCGGGTCGCATCAGTGGCAGCAGCTGCAGCAGCAGCAGTTACA
GACCCCCCCCTTCCGCCTGTGGGGGATGGGGAAGGAGAGGCAGGAAGACA
GGAAGGGGTGAAAGGATGGAAGAAATTCATCAAGTGGTGGTAGATGTCAG
GAGGCGGCCCCGTCCTGAAACCCTCCACGCTGCGGGCCTGGAAGGTGACC
ACGGGTGTGGCAACATTTTTCACGGGCTTTCAGCTCCTGTTCCGGACAGA
CTACGGGGAGCGGGAGCACGTCTTCACACCGATCCAGCGCTGGTACACGG
ACCAGGTGGACGCTCTGCTCGGAGTCGAAAGCGAGATTGCCCGTCGGCTC
AAGACCCCCACCCTCAGCCTCGCACCTTCTCAAGAAGGGGAGGAACGAGC
GCGGGTCGCATCAGTGGCAGCAGCTGCAGCAGCAGCAGTTACAGACCCCC
CCCTTCCGCCTGTGGGGGATGGGGAAGGAGAGGCAGGAAGACAGGAAGGG
GTGAAAGGATGGAAGAAATTCATCAAGTGGTGGTAGATGTCAGGAGGCGG
CCCCGTCCTGAAACCCTCCACGCTGCGGGCCTGGAAGGTGACCACGGGTG
TGGCAACATTTTTCACGGGCTTTCAGCTCCTGTTCCGGACAGACTACGGG
GAGCGGGAGCACGTCTTCACACCGATCCAGCGCTGGTACACGGACCAGGT
GGACGCTCTGCTCGGAGTCGAAAGCGAGATTGCCCGTCGGCTCAAGACCC
CCACCCTCAGCCTCGCACCTTCTCAAGAAGGGGAGGAACGAGCGCGGGTC
GCATCAGTGGCAGCAGCTGCAGCAGCAGCAGTTACAGACCCCCCCCTTCC
GCCTGTGGGGGATGGGGAAGGAGAGGCAGGAAGACAGGAAGGGGTGAAAG
GATGGAAGAAATTCATCAAGTGGTGGTAG
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Synonyms
Publications