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Properties
| Property Name | Value |
|---|
| TranscriptId | 624748 |
| Track | FilteredModels2 |
| ProteinId | 624662 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:996467..998872 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1006 ID=mRNA_1006|Name=jgi.p|Nanoce1779_2|624662|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp
AGAACTGCACAAAATTACATCACATAGCGACAGCGCATAGGTGGGTCCAG
ACCCAAGCAACTCTCCGTGGACACACATCGCCATTGATCCTCAACAACGC
ATTGATGGCGCCCACCTCCGTCTCCGCCACGCATTTGTCAAACCCGCACG
TCAAGATGCTAATTGGGCCTCAGCCTGCTACAGTCCGGGGCGCGGCCACC
CACCTGGGCAAGCATCCCAAGCTACCCAAAGTGATTTATCCATCCGGGAA
ACAGGTCGTGGTGCGGGATTTGGAGAATCTTACAGATTTCTTTGTTTACC
GTGGGCATAATGCTGCCGTGACCGTGGCCAAGTTCTCTCCCAACGGCTAT
TGGGTCGCTTCCGGTGATGCCACAGGCAAGGTTCGCATCTGGTCATGGGA
CAACCCCGAACATATCCTCAAATTAGAAGTGCAGGTCGTGGGGGGAGGGG
AGGTGAAAGACATCGATTGGGATGTTGAAAGCAGGAGGGTGGTGGCGGTA
GGAGAGGGACAGGGGGTAAACGCAAAAGTATTTGGGTGGGATACAGGAAC
GAGCCTGGGGGAATTGAATGGGCATGGAAAGAGGGTGATCTGTTGCAGCT
ATCGACAGGGGAGGCCGGGGCGGTTGGTAACGGGGAGTGAGGATACCCGG
ACTGTGTTTTATAAGGGCCCGCCCTTTAATTTGGAGAGGAGTAATACCCA
GCATGGGGGATGGGTGAATTGTGTGAGATATTCGCCGGCATGTGAAAAGA
AAGAGGGGCGGAAAAAGGGAGAGGAGGACTGTTTCGTGACGGCATCGTCG
GACAAGAGGGTTTTGGTTTATGACGGGCTCACGGGGGAGTTGAAGGAAGA
GCTACGAGATACAAGCATCAACATGAGTAGTAAAGGTGGAGAAAAAGCGC
TTGCGCATTTTGGTTCGATTTACTCCTTGGCATTTTCCCCCAGTGGTTCG
CGGCTGGCGACGGCGTCGGCGGACAAAACGATCAAGATTTGGGACATGGA
GCATAAAAAGATTGAAGCAACACTGGCTTGTGCCCCGGGGAGAGATGATG
AGATAGGGGAGATGCAAAATGCTGTGTTGTGGTGGGGTGAAAATTCCTTG
GTGTCTCTGTCATTGAATGGTGATGTAAATATGTTGCAGGTCGAGGGGGG
GGGGGAGAGGGGGGGAGAAGGAGGGGGAAGAGTGAGTAGGGGAAAGGTGT
TACAGGGGCATCAGGTTACCATAACAGCACTGGCGGTCGAGCGAGAGCGG
GGCGTATTTTACACTTCTTCGTATGATGGGATGGTGATGGCTTGGGAGTG
GAAGGACGGTAGAAGGGGAGAAGGGAGAAGGGTGGGGGGGAGTGTGCCTA
AAACGGTCAATTTGGCGAATCACGCGGGGAAGATCGTGGGGCTGGCTGTG
GTAGGAGGAGGAGGGGGAGAGGAGGCTGATAGGAGGGAACTAAAAAGTGT
GGGGTTTGACGATATGCTACGGACGGCCGTGCTTAATGAGGAGGGAGGAG
GGACATATGAGGGGAAGGCGGGCGGGGAGGGAGGGATTATGATGTTGACG
GGTCAGCCGGTGGCGATAGCAGCAGCGGGAGGAGGGTGTGCATTGGTTGC
TGTGATTTTTCGTCCGGGTGGGATGGTGCTGGTTAGGGGAGAGGAGGTAT
TCTGGTCGGTTGAACAGCTACCTTCCACACCATTGAGTGTCGCAATGTGG
GGGGATGATGAGGTGGCGGTGGGGGGAGAGGATTGTAAGGTGTATATTTA
TGCTGTTGGGGCAGCATGCAAAGAAGCAGTGATGCTCGAGGGGCCACGAG
GGCAGGTTTCGGCTCTAGCCTACAGCCCGGGAGGCGAATACCTGGCGGTC
GGGGACTGCAACCGGGAAGTGTCTGTGTTTGCGCGAGGACAGGGGGCAGG
AGGAGTAAAAGGAGGAGGGGGATGGACGAGCAAGATTTCCAGGCAATGGG
TGCACCACACGTCGAGAATCACAGCGTTGGCCTGGTCTCCCACCGGGGAG
TATTTGGTGAGTGGGTCATTGGATAGCCATATTATCGTCTGGACTCCAGG
CCTGGATGGCAAGGGCAGGCGGATAGTAACGTTCGAGTTAGCGCACAAAG
ACGGGGTGACGGTGCTAGATTGGCTTTCAGAAGACGAGGTGGTGTCTTCG
GGGAATGACGCCGTGATTTGTGTGTGGGATGTGGCGGGTGCGATTGCGGC
GGCGGTGGCCCTGAAGAAGTAGGGAGGGGAAGGAAAGGAGGCAGTCAGGG
AGCTACAGTGTAAGCGTAGGATGTTGTAATACTAAGCAAAAATGAAGCAA
CTTTTACAATGAAG back to topprotein sequence of jgi.p|Nanoce1779_2|624662 >mRNA_1006-protein ID=mRNA_1006-protein|Name=jgi.p|Nanoce1779_2|624662|organism=Nannochloropsis oceanica|type=polypeptide|length=706bp
MAPTSVSATHLSNPHVKMLIGPQPATVRGAATHLGKHPKLPKVIYPSGKQ
VVVRDLENLTDFFVYRGHNAAVTVAKFSPNGYWVASGDATGKVRIWSWDN
PEHILKLEVQVVGGGEVKDIDWDVESRRVVAVGEGQGVNAKVFGWDTGTS
LGELNGHGKRVICCSYRQGRPGRLVTGSEDTRTVFYKGPPFNLERSNTQH
GGWVNCVRYSPACEKKEGRKKGEEDCFVTASSDKRVLVYDGLTGELKEEL
RDTSINMSSKGGEKALAHFGSIYSLAFSPSGSRLATASADKTIKIWDMEH
KKIEATLACAPGRDDEIGEMQNAVLWWGENSLVSLSLNGDVNMLQVEGGG
ERGGEGGGRVSRGKVLQGHQVTITALAVERERGVFYTSSYDGMVMAWEWK
DGRRGEGRRVGGSVPKTVNLANHAGKIVGLAVVGGGGGEEADRRELKSVG
FDDMLRTAVLNEEGGGTYEGKAGGEGGIMMLTGQPVAIAAAGGGCALVAV
IFRPGGMVLVRGEEVFWSVEQLPSTPLSVAMWGDDEVAVGGEDCKVYIYA
VGAACKEAVMLEGPRGQVSALAYSPGGEYLAVGDCNREVSVFARGQGAGG
VKGGGGWTSKISRQWVHHTSRITALAWSPTGEYLVSGSLDSHIIVWTPGL
DGKGRRIVTFELAHKDGVTVLDWLSEDEVVSSGNDAVICVWDVAGAIAAA
VALKK* back to topmRNA from alignment at scaffold_2:996467..998872- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1006 ID=mRNA_1006|Name=jgi.p|Nanoce1779_2|624662|organism=Nannochloropsis oceanica|type=mRNA|length=2406bp|location=Sequence derived from alignment at scaffold_2:996467..998872- (Nannochloropsis oceanica)
AGAACTGCACAAAATTACATCACATAGCGACAGCGCATAGGTGGGTCCAG
ACCCAAGCAACTCTCCGTGGACACACATCGCCATTGATCCTCAACAACGC
ATTGATGGCGCCCACCTCCGTCTCCGCCACGCATTTGTCAAACCCGCACG
TCAAGATGCTAATTGGGCCTCAGCCTGCTACAGTCCGGGGCGCGGCCACC
CACCTGGGCAAGCATCCCAAGCTACCCAAAGTGATTTATCCATCCGGGAA
ACAGGTCGTGGTGCGGGATTTGGAGAATCTTACAGATTTCTTTGTTTACC
GTGGGCATAATGCTGCCGTGACCGTGGCCAAGGTGAGGGAGAGGGACTCT
TTCGCAACTTGTTCCCATCACTTCCCCTCACTCTCCCACCTTTTGGGTCT
TCCTCCGTACCCCCATTCCCACAGTTCTCTCCCAACGGCTATTGGGTCGC
TTCCGGTGATGCCACAGGCAAGGTTCGCATCTGGTCATGGGACAACCCCG
AACATATCCTCAAATTAGAAGTGCAGGTCGTGGGGGGAGGGGAGGTGAAA
GACATCGATTGGGATGTTGAAAGCAGGAGGGTGGTGGCGGTAGGAGAGGG
ACAGGGGGTAAACGCAAAAGTATTTGGGTGGGATACAGGAACGAGCCTGG
GGGAATTGAATGGGCATGGAAAGAGGGTGATCTGTTGCAGCTATCGACAG
GGGAGGCCGGGGCGGTTGGTAACGGGGAGTGAGGATACCCGGACTGTGTT
TTATAAGGGCCCGCCCTTTAATTTGGAGAGGAGTAATACCCAGCATGGGG
GATGGGTGAATTGTGTGAGATATTCGCCGGCATGTGAAAAGAAAGAGGGG
CGGAAAAAGGGAGAGGAGGACTGTTTCGTGACGGCATCGTCGGACAAGAG
GGTTTTGGTTTATGACGGGCTCACGGGGGAGTTGAAGGAAGAGCTACGAG
ATACAAGCATCAACATGAGTAGTAAAGGTGGAGAAAAAGCGCTTGCGCAT
TTTGGTTCGATTTACTCCTTGGCATTTTCCCCCAGTGGTTCGCGGCTGGC
GACGGCGTCGGCGGACAAAACGATCAAGATTTGGGACATGGAGCATAAAA
AGATTGAAGCAACACTGGCTTGTGCCCCGGGGAGAGATGATGAGATAGGG
GAGATGCAAAATGCTGTGTTGTGGTGGGGTGAAAATTCCTTGGTGTCTCT
GTCATTGAATGGTGATGTAAATATGTTGCAGGTCGAGGGGGGGGGGGAGA
GGGGGGGAGAAGGAGGGGGAAGAGTGAGTAGGGGAAAGGTGTTACAGGGG
CATCAGGTTACCATAACAGCACTGGCGGTCGAGCGAGAGCGGGGCGTATT
TTACACTTCTTCGTATGATGGGATGGTGATGGCTTGGGAGTGGAAGGACG
GTAGAAGGGGAGAAGGGAGAAGGGTGGGGGGGAGTGTGCCTAAAACGGTC
AATTTGGCGAATCACGCGGGGAAGATCGTGGGGCTGGCTGTGGTAGGAGG
AGGAGGGGGAGAGGAGGCTGATAGGAGGGAACTAAAAAGTGTGGGGTTTG
ACGATATGCTACGGACGGCCGTGCTTAATGAGGAGGGAGGAGGGACATAT
GAGGGGAAGGCGGGCGGGGAGGGAGGGATTATGATGTTGACGGGTCAGCC
GGTGGCGATAGCAGCAGCGGGAGGAGGGTGTGCATTGGTTGCTGTGATTT
TTCGTCCGGGTGGGATGGTGCTGGTTAGGGGAGAGGAGGTATTCTGGTCG
GTTGAACAGCTACCTTCCACACCATTGAGTGTCGCAATGTGGGGGGATGA
TGAGGTGGCGGTGGGGGGAGAGGATTGTAAGGTGTATATTTATGCTGTTG
GGGCAGCATGCAAAGAAGCAGTGATGCTCGAGGGGCCACGAGGGCAGGTT
TCGGCTCTAGCCTACAGCCCGGGAGGCGAATACCTGGCGGTCGGGGACTG
CAACCGGGAAGTGTCTGTGTTTGCGCGAGGACAGGGGGCAGGAGGAGTAA
AAGGAGGAGGGGGATGGACGAGCAAGATTTCCAGGCAATGGGTGCACCAC
ACGTCGAGAATCACAGCGTTGGCCTGGTCTCCCACCGGGGAGTATTTGGT
GAGTGGGTCATTGGATAGCCATATTATCGTCTGGACTCCAGGCCTGGATG
GCAAGGGCAGGCGGATAGTAACGTTCGAGTTAGCGCACAAAGACGGGGTG
ACGGTGCTAGATTGGCTTTCAGAAGACGAGGTGGTGTCTTCGGGGAATGA
CGCCGTGATTTGTGTGTGGGATGTGGCGGGTGCGATTGCGGCGGCGGTGG
CCCTGAAGAAGTAGGGAGGGGAAGGAAAGGAGGCAGTCAGGGAGCTACAG
TGTAAGCGTAGGATGTTGTAATACTAAGCAAAAATGAAGCAACTTTTACA
ATGAAG back to topCoding sequence (CDS) from alignment at scaffold_2:996467..998872- >mRNA_1006 ID=mRNA_1006|Name=jgi.p|Nanoce1779_2|624662|organism=Nannochloropsis oceanica|type=CDS|length=4236bp|location=Sequence derived from alignment at scaffold_2:996467..998872- (Nannochloropsis oceanica)
TTCTCTCCCAACGGCTATTGGGTCGCTTCCGGTGATGCCACAGGCAAGGT
TCGCATCTGGTCATGGGACAACCCCGAACATATCCTCAAATTAGAAGTGC
AGGTCGTGGGGGGAGGGGAGGTGAAAGACATCGATTGGGATGTTGAAAGC
AGGAGGGTGGTGGCGGTAGGAGAGGGACAGGGGGTAAACGCAAAAGTATT
TGGGTGGGATACAGGAACGAGCCTGGGGGAATTGAATGGGCATGGAAAGA
GGGTGATCTGTTGCAGCTATCGACAGGGGAGGCCGGGGCGGTTGGTAACG
GGGAGTGAGGATACCCGGACTGTGTTTTATAAGGGCCCGCCCTTTAATTT
GGAGAGGAGTAATACCCAGCATGGGGGATGGGTGAATTGTGTGAGATATT
CGCCGGCATGTGAAAAGAAAGAGGGGCGGAAAAAGGGAGAGGAGGACTGT
TTCGTGACGGCATCGTCGGACAAGAGGGTTTTGGTTTATGACGGGCTCAC
GGGGGAGTTGAAGGAAGAGCTACGAGATACAAGCATCAACATGAGTAGTA
AAGGTGGAGAAAAAGCGCTTGCGCATTTTGGTTCGATTTACTCCTTGGCA
TTTTCCCCCAGTGGTTCGCGGCTGGCGACGGCGTCGGCGGACAAAACGAT
CAAGATTTGGGACATGGAGCATAAAAAGATTGAAGCAACACTGGCTTGTG
CCCCGGGGAGAGATGATGAGATAGGGGAGATGCAAAATGCTGTGTTGTGG
TGGGGTGAAAATTCCTTGGTGTCTCTGTCATTGAATGGTGATGTAAATAT
GTTGCAGGTCGAGGGGGGGGGGGAGAGGGGGGGAGAAGGAGGGGGAAGAG
TGAGTAGGGGAAAGGTGTTACAGGGGCATCAGGTTACCATAACAGCACTG
GCGGTCGAGCGAGAGCGGGGCGTATTTTACACTTCTTCGTATGATGGGAT
GGTGATGGCTTGGGAGTGGAAGGACGGTAGAAGGGGAGAAGGGAGAAGGG
TGGGGGGGAGTGTGCCTAAAACGGTCAATTTGGCGAATCACGCGGGGAAG
ATCGTGGGGCTGGCTGTGGTAGGAGGAGGAGGGGGAGAGGAGGCTGATAG
GAGGGAACTAAAAAGTGTGGGGTTTGACGATATGCTACGGACGGCCGTGC
TTAATGAGGAGGGAGGAGGGACATATGAGGGGAAGGCGGGCGGGGAGGGA
GGGATTATGATGTTGACGGGTCAGCCGGTGGCGATAGCAGCAGCGGGAGG
AGGGTGTGCATTGGTTGCTGTGATTTTTCGTCCGGGTGGGATGGTGCTGG
TTAGGGGAGAGGAGGTATTCTGGTCGGTTGAACAGCTACCTTCCACACCA
TTGAGTGTCGCAATGTGGGGGGATGATGAGGTGGCGGTGGGGGGAGAGGA
TTGTAAGGTGTATATTTATGCTGTTGGGGCAGCATGCAAAGAAGCAGTGA
TGCTCGAGGGGCCACGAGGGCAGGTTTCGGCTCTAGCCTACAGCCCGGGA
GGCGAATACCTGGCGGTCGGGGACTGCAACCGGGAAGTGTCTGTGTTTGC
GCGAGGACAGGGGGCAGGAGGAGTAAAAGGAGGAGGGGGATGGACGAGCA
AGATTTCCAGGCAATGGGTGCACCACACGTCGAGAATCACAGCGTTGGCC
TGGTCTCCCACCGGGGAGTATTTGGTGAGTGGGTCATTGGATAGCCATAT
TATCGTCTGGACTCCAGGCCTGGATGGCAAGGGCAGGCGGATAGTAACGT
TCGAGTTAGCGCACAAAGACGGGGTGACGGTGCTAGATTGGCTTTCAGAA
GACGAGGTGGTGTCTTCGGGGAATGACGCCGTGATTTGTGTGTGGGATGT
GGCGGGTGCGATTGCGGCGGCGGTGGCCCTGAAGAAGTAGATGGCGCCCA
CCTCCGTCTCCGCCACGCATTTGTCAAACCCGCACGTCAAGATGCTAATT
GGGCCTCAGCCTGCTACAGTCCGGGGCGCGGCCACCCACCTGGGCAAGCA
TCCCAAGCTACCCAAAGTGATTTATCCATCCGGGAAACAGGTCGTGGTGC
GGGATTTGGAGAATCTTACAGATTTCTTTGTTTACCGTGGGCATAATGCT
GCCGTGACCGTGGCCAAGTTCTCTCCCAACGGCTATTGGGTCGCTTCCGG
TGATGCCACAGGCAAGGTTCGCATCTGGTCATGGGACAACCCCGAACATA
TCCTCAAATTAGAAGTGCAGGTCGTGGGGGGAGGGGAGGTGAAAGACATC
GATTGGGATGTTGAAAGCAGGAGGGTGGTGGCGGTAGGAGAGGGACAGGG
GGTAAACGCAAAAGTATTTGGGTGGGATACAGGAACGAGCCTGGGGGAAT
TGAATGGGCATGGAAAGAGGGTGATCTGTTGCAGCTATCGACAGGGGAGG
CCGGGGCGGTTGGTAACGGGGAGTGAGGATACCCGGACTGTGTTTTATAA
GGGCCCGCCCTTTAATTTGGAGAGGAGTAATACCCAGCATGGGGGATGGG
TGAATTGTGTGAGATATTCGCCGGCATGTGAAAAGAAAGAGGGGCGGAAA
AAGGGAGAGGAGGACTGTTTCGTGACGGCATCGTCGGACAAGAGGGTTTT
GGTTTATGACGGGCTCACGGGGGAGTTGAAGGAAGAGCTACGAGATACAA
GCATCAACATGAGTAGTAAAGGTGGAGAAAAAGCGCTTGCGCATTTTGGT
TCGATTTACTCCTTGGCATTTTCCCCCAGTGGTTCGCGGCTGGCGACGGC
GTCGGCGGACAAAACGATCAAGATTTGGGACATGGAGCATAAAAAGATTG
AAGCAACACTGGCTTGTGCCCCGGGGAGAGATGATGAGATAGGGGAGATG
CAAAATGCTGTGTTGTGGTGGGGTGAAAATTCCTTGGTGTCTCTGTCATT
GAATGGTGATGTAAATATGTTGCAGGTCGAGGGGGGGGGGGAGAGGGGGG
GAGAAGGAGGGGGAAGAGTGAGTAGGGGAAAGGTGTTACAGGGGCATCAG
GTTACCATAACAGCACTGGCGGTCGAGCGAGAGCGGGGCGTATTTTACAC
TTCTTCGTATGATGGGATGGTGATGGCTTGGGAGTGGAAGGACGGTAGAA
GGGGAGAAGGGAGAAGGGTGGGGGGGAGTGTGCCTAAAACGGTCAATTTG
GCGAATCACGCGGGGAAGATCGTGGGGCTGGCTGTGGTAGGAGGAGGAGG
GGGAGAGGAGGCTGATAGGAGGGAACTAAAAAGTGTGGGGTTTGACGATA
TGCTACGGACGGCCGTGCTTAATGAGGAGGGAGGAGGGACATATGAGGGG
AAGGCGGGCGGGGAGGGAGGGATTATGATGTTGACGGGTCAGCCGGTGGC
GATAGCAGCAGCGGGAGGAGGGTGTGCATTGGTTGCTGTGATTTTTCGTC
CGGGTGGGATGGTGCTGGTTAGGGGAGAGGAGGTATTCTGGTCGGTTGAA
CAGCTACCTTCCACACCATTGAGTGTCGCAATGTGGGGGGATGATGAGGT
GGCGGTGGGGGGAGAGGATTGTAAGGTGTATATTTATGCTGTTGGGGCAG
CATGCAAAGAAGCAGTGATGCTCGAGGGGCCACGAGGGCAGGTTTCGGCT
CTAGCCTACAGCCCGGGAGGCGAATACCTGGCGGTCGGGGACTGCAACCG
GGAAGTGTCTGTGTTTGCGCGAGGACAGGGGGCAGGAGGAGTAAAAGGAG
GAGGGGGATGGACGAGCAAGATTTCCAGGCAATGGGTGCACCACACGTCG
AGAATCACAGCGTTGGCCTGGTCTCCCACCGGGGAGTATTTGGTGAGTGG
GTCATTGGATAGCCATATTATCGTCTGGACTCCAGGCCTGGATGGCAAGG
GCAGGCGGATAGTAACGTTCGAGTTAGCGCACAAAGACGGGGTGACGGTG
CTAGATTGGCTTTCAGAAGACGAGGTGGTGTCTTCGGGGAATGACGCCGT
GATTTGTGTGTGGGATGTGGCGGGTGCGATTGCGGCGGCGGTGGCCCTGA
AGAAGTAGATGGCGCCCACCTCCGTCTCCGCCACGCATTTGTCAAACCCG
CACGTCAAGATGCTAATTGGGCCTCAGCCTGCTACAGTCCGGGGCGCGGC
CACCCACCTGGGCAAGCATCCCAAGCTACCCAAAGTGATTTATCCATCCG
GGAAACAGGTCGTGGTGCGGGATTTGGAGAATCTTACAGATTTCTTTGTT
TACCGTGGGCATAATGCTGCCGTGACCGTGGCCAAG back to top
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