jgi.p|Nanoce1779_2|609536, mRNA_10059 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609536
Unique NamemRNA_10059
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length736
Alignment locationscaffold_46:7229..7964 -

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Properties
Property NameValue
TranscriptId609622
TrackFilteredModels2
ProteinId609536
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:7229..7964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609536gene_10059Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609536mRNA_10059-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10059CDS_10059Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10059 ID=mRNA_10059|Name=jgi.p|Nanoce1779_2|609536|organism=Nannochloropsis oceanica|type=mRNA|length=736bp
TTCCCAACTACTTGTCTTGTTCGTCTGTTGCTTTTGTTTCTTTTGTCAAG
CAAGGATTTTTGTAGATAAATACCCCATAGCATCAAGCATCGATGCTCGA
AAACCATTCTACATGACAATTTTACCCATTTTCCTGCACGCCACTTTTGC
TTTAGCTGCTTTTGTTATGTATGCACACCCAAGCCCTTCCCGCATTCTCA
CCTCATGCAATTCCTCTCAATCATCAATGTTGTCACCACTGATGCTGTAT
TTAGGGCCGTGTGCGTCGTGCTCTCTCCCATATCCTTCTCACCTTCCACC
TCTTCTCAAAGATGGCCGCTCGCCTCCTCGACGACAGCCTTTTCTCACCC
ACAAAGCACGTTTCCACTCTGTCAATTCTGATACCCGACTTTCATATACA
TGCATCCGCTTCTCAACGACATATGCCTCTCTTGCTTTCTTCGATCAACT
TTTTAAATCTCCTTTCGCATTTGTCTTCCCTCACCTGTTCGCCTCCGCAC
CGCCAGATTCTCTTCCTCCGCCCTGATTGAGTTCCTGAATCCCTTTCTTC
GCTGAGAAGTGCTACTTCCCACCATCCATGGTTAGCTTTCTCCTTTTCCC
CCTCCTCCCACTGCCGCTTCGACCTCACAAAACACTTTCTCCCCCCCTCC
TTCATTTCCTCTTCCTCCTTCCTGCCCCCCCCGCACCACCGTCCCTCCTC
CTCCCTCGCTCCCGCCCTCCTTCCCTCCTTCCCTCT
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protein sequence of jgi.p|Nanoce1779_2|609536

>mRNA_10059-protein ID=mRNA_10059-protein|Name=jgi.p|Nanoce1779_2|609536|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MTILPIFLHATFALAAFVMYAHPSPSRILTSCNSSQSSMLSPLMLYLGPC
ASCSLPYPSHLPPLLKDGRSPPRRQPFLTHKARFHSVNSDTRLSYTCIRF
STTYASLAFFDQLFKSPFAFVFPHLFASAPPDSLPPP*
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mRNA from alignment at scaffold_46:7229..7964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10059 ID=mRNA_10059|Name=jgi.p|Nanoce1779_2|609536|organism=Nannochloropsis oceanica|type=mRNA|length=736bp|location=Sequence derived from alignment at scaffold_46:7229..7964- (Nannochloropsis oceanica)
TTCCCAACTACTTGTCTTGTTCGTCTGTTGCTTTTGTTTCTTTTGTCAAG
CAAGGATTTTTGTAGATAAATACCCCATAGCATCAAGCATCGATGCTCGA
AAACCATTCTACATGACAATTTTACCCATTTTCCTGCACGCCACTTTTGC
TTTAGCTGCTTTTGTTATGTATGCACACCCAAGCCCTTCCCGCATTCTCA
CCTCATGCAATTCCTCTCAATCATCAATGTTGTCACCACTGATGCTGTAT
TTAGGGCCGTGTGCGTCGTGCTCTCTCCCATATCCTTCTCACCTTCCACC
TCTTCTCAAAGATGGCCGCTCGCCTCCTCGACGACAGCCTTTTCTCACCC
ACAAAGCACGTTTCCACTCTGTCAATTCTGATACCCGACTTTCATATACA
TGCATCCGCTTCTCAACGACATATGCCTCTCTTGCTTTCTTCGATCAACT
TTTTAAATCTCCTTTCGCATTTGTCTTCCCTCACCTGTTCGCCTCCGCAC
CGCCAGATTCTCTTCCTCCGCCCTGATTGAGTTCCTGAATCCCTTTCTTC
GCTGAGAAGTGCTACTTCCCACCATCCATGGTTAGCTTTCTCCTTTTCCC
CCTCCTCCCACTGCCGCTTCGACCTCACAAAACACTTTCTCCCCCCCTCC
TTCATTTCCTCTTCCTCCTTCCTGCCCCCCCCGCACCACCGTCCCTCCTC
CTCCCTCGCTCCCGCCCTCCTTCCCTCCTTCCCTCT
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Coding sequence (CDS) from alignment at scaffold_46:7229..7964-

>mRNA_10059 ID=mRNA_10059|Name=jgi.p|Nanoce1779_2|609536|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_46:7229..7964- (Nannochloropsis oceanica)
ATGACAATTTTACCCATTTTCCTGCACGCCACTTTTGCTTTAGCTGCTTT
TGTTATGTATGCACACCCAAGCCCTTCCCGCATTCTCACCTCATGCAATT
CCTCTCAATCATCAATGTTGTCACCACTGATGCTGTATTTAGGGCCGTGT
GCGTCGTGCTCTCTCCCATATCCTTCTCACCTTCCACCTCTTCTCAAAGA
TGGCCGCTCGCCTCCTCGACGACAGCCTTTTCTCACCCACAAAGCACGTT
TCCACTCTGTCAATTCTGATACCCGACTTTCATATACATGCATCCGCTTC
TCAACGACATATGCCTCTCTTGCTTTCTTCGATCAACTTTTTAAATCTCC
TTTCGCATTTGTCTTCCCTCACCTGTTCGCCTCCGCACCGCCAGATTCTC
TTCCTCCGCCCTGA
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Synonyms
Publications