jgi.p|Nanoce1779_2|609529, mRNA_10057 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609529
Unique NamemRNA_10057
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1952
Alignment locationscaffold_46:1702..4005 -

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Properties
Property NameValue
TranscriptId609615
TrackFilteredModels2
ProteinId609529
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:1702..4005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609529gene_10057Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609529mRNA_10057-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10057CDS_10057Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10057 ID=mRNA_10057|Name=jgi.p|Nanoce1779_2|609529|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp
ACCAGAGAGACCGACGAAAGCTAGGACGACGCCAAGGAACGAAGCTTAGG
AGAGTTTTTCTTGGTAGGAATTTGTAATGTGATGGATCAAACAATCAAGC
AATGAAGCACTGTGTAACTGTCTGTCTCTGCATCGCAGTGTCCCAACATT
CCCTCCCCTCCCTGTTTCCCCACCCGCAGTTCTCGAAGGCTACATCGTCA
GCACAGAAGAAAGAGTAGCTACAGAGTCGACAGCCCAAGCCCCTTCCCGT
GAGATAACACCACAATGCAAGAATAATATAGTTCTTTCATCGTCTCCTTC
TCTCTCCTACTCCCACCCGACCCAGACAGCTCTTGAACGAACCCTTCGCA
TTATAAGTAACATGACCAAGATTGCGGAAGGTCACTCCCTGCCTCTCGAC
CAGATCAAGTTTAAGATACTCAAGGAGGGAAACGCTACGGATGTGACGGG
CACAGACTTGTTCGGGTCGGGTAAGAAGGTTGTGCTCTTTGGCGTACCGG
GTGCCTTTACTCCCACGTGCACCAATACCCATGCCCCGGAGTACCTTGCC
AAATACGATGCTTTCAAGGCCAAGGGCGTCGACGCCATCTACTGCGCGGC
GAGCAACGACTGCTTTGTCACTTCCGCCTGGGCTAAGAGTCTTAACGCCG
GTGAGAAGATGACGATCCTCGCAGATGGTGATTGCGCGTTTGCCAAACTC
ATGGGGCTGACTGTGGAGACGGAAGGGTTTGGAGGGCTGCGTTTGAGCCG
TTTCTCGGCTTTAATAGAGGATGGTGTGGTGACAAAGCTGCATTTGGAGG
AGGGCGGAGGATACTCGGGCGCGAGTGGGGCAGACCAGATGCTGAAAGAC
TTGGAGTAGAGCGAATGAGGGAGGTGAGGGAGGGGAAGTACGAATGTAGT
CGAGTCGTGGGGTTCCGTTTAATGTCTTTTCTTGAGAAATAAAGGTGGGT
CGGTATGGAAGCGATGAGGAGGTTTGGAAAGCGAAATTTACAGCGATTGT
GTGGCCCGTTCTGCCAGACGGAGACGACGCCGGCTTCACTCTCGGCCGCG
TTTTTTTTTGGGTCCTGCCGCCACAATGATAGAGACGACGCTGTCTTCTC
TAGGGCGCGGGAATCCTGCCGCAACAACAAAAGATGAGAGTATGAAAAAT
CGATGATAATCAATATGAGAGAGAGAAAAGGAGTACATGGGAAGCAGGAA
TATATACATTCACTCGTGTTCCAGCGTTGTGTGCCATACGGTTATACCGC
TTCGCATGTCCTTACGTTTCACCTGATGACATAACATGCCTTTTGTGCTC
CTTCTTCGATCGTAAATTCCTTCATTTCACCATCAAGAATTCACACTCTA
CTTGATGCTGTACCATCTCCATCGCCTTGCACGTTCACACCGCCCTCCGT
AACAATTTGCCACCAGAGGCGGCCCCCCTTACCAGAGCCATGAACTCGGA
ATGATGAAGCCGTCAGAACAAGCCCATGCCCGCAGTCGTATTGCTCTCTG
TCTGTGTGTAGGTATCGCCGGCCAACTCTAACATCTCTTATGCATCGCTT
CCGAGATTCCCCGCACCAGCACCGTGGATGCCGGCACAAGCCTCAAGACG
AGAAGAAGGAAAAGGCCGAGGAAGGGCAGGACGGTGGCACACACGCCGAT
TGCGAACAAGGTAGCTACACCGAGCCGTTCTTGCAGCTGGAGAATACGCC
ACCGCCTGTGGTACCAGCGGGGCATGTTGCCCTCGGTGTCGTCGCCGCTC
TGCTCGCGGTGCTCGATGACTTACTCTCTCCAGCTGCAGCCCCCCCTTTC
CATTCCCCACCGCTGGTGCTTTCCCCTCCTTCTCTGTCTCTAAACGCCTT
CTTCTTTCCTCCTTCCGCTCGGCTGCCTCCTTAACCAACAGCTGCAAAAA
CTGTCGTGTATACACAACTTCACAAGCCTTCCCCCCAGCCTCCCCTCCTC
TT
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protein sequence of jgi.p|Nanoce1779_2|609529

>mRNA_10057-protein ID=mRNA_10057-protein|Name=jgi.p|Nanoce1779_2|609529|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTKIAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFT
PTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKM
TILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGG
YSGASGADQMLKDLE*
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mRNA from alignment at scaffold_46:1702..4005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10057 ID=mRNA_10057|Name=jgi.p|Nanoce1779_2|609529|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp|location=Sequence derived from alignment at scaffold_46:1702..4005- (Nannochloropsis oceanica)
ACCAGAGAGACCGACGAAAGCTAGGACGACGCCAAGGAACGAAGCTTAGG
AGAGTTTTTCTTGGTAGGAATTTGTAATGTGATGGATCAAACAATCAAGC
AATGAAGCACTGTGTAACTGTCTGTCTCTGCATCGCAGTGTCCCAACATT
CCCTCCCCTCCCTGTTTCCCCACCCGCAGTTCTCGAAGGCTACATCGTCA
GCACAGAAGAAAGAGTAGCTACAGAGTCGACAGCCCAAGCCCCTTCCCGT
GAGATAACACCACAATGCAAGAATAATATAGTTCTTTCATCGTCTCCTTC
TCTCTCCTACTCCCACCCGACCCAGACAGCTCTTGAACGAACCCTTCGCA
TTATAAGTAACATGACCAAGATTGCGGAAGGTCACTCCCTGCCTCTCGAC
CAGATCAAGTTTAAGATACTCAAGGAGGGAAACGCTACGGATGTGACGGG
CACAGACTTGTTCGGGTCGGGTAAGAAGGTTGTGCTCTTTGGCGTACCGG
GTGCCTTTACTCCCACGTGGTGAGTGCTTGTACCAGAGAGAAAATGCTTC
GAAGCGGTGGTGTCCTGGGGAAAGAAATTAGATGCTAGAAGGCAAGGGGA
GGATAGTAGGGCGCGGTGTGTAGGATAGCTTTCTCACGAAAAGTTTCTTA
CCCGCACTTTCTTTTTCGTCCTACTTGCCGCCCGAACCCTCCACCCTACC
CACCCATCTCCAGCACCAATACCCATGCCCCGGAGTACCTTGCCAAATAC
GATGCTTTCAAGGCCAAGGTAGAACAAAGTGTCCTTGTCCCAATGACCCG
GAACCGCCCAAAATGCCTCCTCTTCTTTCCATCCTTCGATTTTTATGCCT
CCTCCCTCCCACCGCATCCTCGCTCCTTAATCACTTATCTTACAACGCTC
TTTCTACCTTTCGTTCCCACTCCCAGGGCGTCGACGCCATCTACTGCGCG
GCGAGCAACGACTGCTTTGTCACTTCCGCCTGGGCTAAGAGTCTTAACGC
CGGTGAGAAGATGACGATCCTCGCAGATGGTGATTGCGCGTTTGCCAAAC
TCATGGGGCTGACTGTGGAGACGGAAGGGTTTGGAGGGCTGCGTTTGAGC
CGTTTCTCGGCTTTAATAGAGGATGGTGTGGTGACAAAGCTGCATTTGGA
GGAGGGCGGAGGATACTCGGGCGCGAGTGGGGCAGACCAGATGCTGAAAG
ACTTGGAGTAGAGCGAATGAGGGAGGTGAGGGAGGGGAAGTACGAATGTA
GTCGAGTCGTGGGGTTCCGTTTAATGTCTTTTCTTGAGAAATAAAGGTGG
GTCGGTATGGAAGCGATGAGGAGGTTTGGAAAGCGAAATTTACAGCGATT
GTGTGGCCCGTTCTGCCAGACGGAGACGACGCCGGCTTCACTCTCGGCCG
CGTTTTTTTTTGGGTCCTGCCGCCACAATGATAGAGACGACGCTGTCTTC
TCTAGGGCGCGGGAATCCTGCCGCAACAACAAAAGATGAGAGTATGAAAA
ATCGATGATAATCAATATGAGAGAGAGAAAAGGAGTACATGGGAAGCAGG
AATATATACATTCACTCGTGTTCCAGCGTTGTGTGCCATACGGTTATACC
GCTTCGCATGTCCTTACGTTTCACCTGATGACATAACATGCCTTTTGTGC
TCCTTCTTCGATCGTAAATTCCTTCATTTCACCATCAAGAATTCACACTC
TACTTGATGCTGTACCATCTCCATCGCCTTGCACGTTCACACCGCCCTCC
GTAACAATTTGCCACCAGAGGCGGCCCCCCTTACCAGAGCCATGAACTCG
GAATGATGAAGCCGTCAGAACAAGCCCATGCCCGCAGTCGTATTGCTCTC
TGTCTGTGTGTAGGTATCGCCGGCCAACTCTAACATCTCTTATGCATCGC
TTCCGAGATTCCCCGCACCAGCACCGTGGATGCCGGCACAAGCCTCAAGA
CGAGAAGAAGGAAAAGGCCGAGGAAGGGCAGGACGGTGGCACACACGCCG
ATTGCGAACAAGGTAGCTACACCGAGCCGTTCTTGCAGCTGGAGAATACG
CCACCGCCTGTGGTACCAGCGGGGCATGTTGCCCTCGGTGTCGTCGCCGC
TCTGCTCGCGGTGCTCGATGACTTACTCTCTCCAGCTGCAGCCCCCCCTT
TCCATTCCCCACCGCTGGTGCTTTCCCCTCCTTCTCTGTCTCTAAACGCC
TTCTTCTTTCCTCCTTCCGCTCGGCTGCCTCCTTAACCAACAGCTGCAAA
AACTGTCGTGTATACACAACTTCACAAGCCTTCCCCCCAGCCTCCCCTCC
TCTT
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Coding sequence (CDS) from alignment at scaffold_46:1702..4005-

>mRNA_10057 ID=mRNA_10057|Name=jgi.p|Nanoce1779_2|609529|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_46:1702..4005- (Nannochloropsis oceanica)
GGCGTCGACGCCATCTACTGCGCGGCGAGCAACGACTGCTTTGTCACTTC
CGCCTGGGCTAAGAGTCTTAACGCCGGTGAGAAGATGACGATCCTCGCAG
ATGGTGATTGCGCGTTTGCCAAACTCATGGGGCTGACTGTGGAGACGGAA
GGGTTTGGAGGGCTGCGTTTGAGCCGTTTCTCGGCTTTAATAGAGGATGG
TGTGGTGACAAAGCTGCATTTGGAGGAGGGCGGAGGATACTCGGGCGCGA
GTGGGGCAGACCAGATGCTGAAAGACTTGGAGTAGCACCAATACCCATGC
CCCGGAGTACCTTGCCAAATACGATGCTTTCAAGGCCAAGATGACCAAGA
TTGCGGAAGGTCACTCCCTGCCTCTCGACCAGATCAAGTTTAAGATACTC
AAGGAGGGAAACGCTACGGATGTGACGGGCACAGACTTGTTCGGGTCGGG
TAAGAAGGTTGTGCTCTTTGGCGTACCGGGTGCCTTTACTCCCACGTGGG
CGTCGACGCCATCTACTGCGCGGCGAGCAACGACTGCTTTGTCACTTCCG
CCTGGGCTAAGAGTCTTAACGCCGGTGAGAAGATGACGATCCTCGCAGAT
GGTGATTGCGCGTTTGCCAAACTCATGGGGCTGACTGTGGAGACGGAAGG
GTTTGGAGGGCTGCGTTTGAGCCGTTTCTCGGCTTTAATAGAGGATGGTG
TGGTGACAAAGCTGCATTTGGAGGAGGGCGGAGGATACTCGGGCGCGAGT
GGGGCAGACCAGATGCTGAAAGACTTGGAGTAGCACCAATACCCATGCCC
CGGAGTACCTTGCCAAATACGATGCTTTCAAGGCCAAGATGACCAAGATT
GCGGAAGGTCACTCCCTGCCTCTCGACCAGATCAAGTTTAAGATACTCAA
GGAGGGAAACGCTACGGATGTGACGGGCACAGACTTGTTCGGGTCGGGTA
AGAAGGTTGTGCTCTTTGGCGTACCGGGTGCCTTTACTCCCACGTGGGCG
TCGACGCCATCTACTGCGCGGCGAGCAACGACTGCTTTGTCACTTCCGCC
TGGGCTAAGAGTCTTAACGCCGGTGAGAAGATGACGATCCTCGCAGATGG
TGATTGCGCGTTTGCCAAACTCATGGGGCTGACTGTGGAGACGGAAGGGT
TTGGAGGGCTGCGTTTGAGCCGTTTCTCGGCTTTAATAGAGGATGGTGTG
GTGACAAAGCTGCATTTGGAGGAGGGCGGAGGATACTCGGGCGCGAGTGG
GGCAGACCAGATGCTGAAAGACTTGGAGTAGCACCAATACCCATGCCCCG
GAGTACCTTGCCAAATACGATGCTTTCAAGGCCAAGATGACCAAGATTGC
GGAAGGTCACTCCCTGCCTCTCGACCAGATCAAGTTTAAGATACTCAAGG
AGGGAAACGCTACGGATGTGACGGGCACAGACTTGTTCGGGTCGGGTAAG
AAGGTTGTGCTCTTTGGCGTACCGGGTGCCTTTACTCCCACGTG
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Synonyms
Publications