jgi.p|Nanoce1779_2|533792, mRNA_10056 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533792
Unique Name	mRNA_10056
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1308
Alignment location	scaffold_46:473..2116 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533878
Track	FilteredModels2
ProteinId	533792

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:473..2116 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533792	gene_10056	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533792	mRNA_10056-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10056	CDS_10056	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_46:473..2116+
coding sequence from alignment at scaffold_46:473..2116+

mRNA sequence

>mRNA_10056 ID=mRNA_10056|Name=jgi.p|Nanoce1779_2|533792|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
ATGACGCAATATCTGCTCCATCACGACGCGGACAAAGGCAGTACCTCACC
ACTTGATACTCTCCTTGTGGTGGGCACAGGGTCGAGCAGAAGCGCGGAAC
TCGCTCCTTCCCTGCCTATCCGCATCGACTGGACAACAATGGCTTCAGCA
CTTGACCCACTGCAAGGGGGAAAGCTCCACCACTCACCACGAGGCCTGCA
CAAGCGGCAACAGCTCGAGTCCCTCTACGTACTTCTAGCGTCCCTACTTC
CATCAACGTCTTCCCCTCCCATCCGGATTGTTGATTTCGGCTGTGGGAGC
GGCAACTCCTCTTTGGCTCTCGCTGCCCTCTTTCCCCATTGCCACTTTAC
GCTTCTCGACGTAAAGCCCACTGCAATTGCTTTGGCGGAGCAACGCGTCA
GGGAGGCCGGCTTGACGAATGTCTCCTTTTTTGTCGGGGAAGCGGATGCC
TGGGAAGATCCCTTCGATCTTGGGATAGGCGTACATTGCTGCGGTTGTCT
CACGGACCGGATACAGCTGCAATGTTTAGCGCGAGAGGCCGCCTACATCC
TGGCCCCGTGCTGTCTGGGGAAGATTGCCCGTTCCCCGGGGGGGGTTATT
TACCCACGATCGGCATGGATGCGGTGTGGCGTCAAGGCTCCTGCCTTTCA
TGCAATTGGTGACCTCAACACTTTCTTCTTGTCGTCCTATGCCATTTTGG
CGTCGGCGGCCGACCATCACAGCCAACACCATGCAGAGGACAGGATCACA
AAGCACCTGCTGGAGTTGGACCGACAGCAAGCGGCGCGGGAGGATTTTCC
AGGCTATTCGGTTTATCTCACACACCTTAGCCCTTTGAGCTGCAGCGAGA
AGAATATTGTGCTTGTGGGCTTGCCAGAGAGGTGGAAGGGGGGAAGAGGA
GGGGAGGCTGGGGGGAAGGCTTGTGAAGTTGTGTATACACGACAGTTTTT
GCAGCTGTTGGTTAAGGAGGCAGCCGAGCGGAAGGAGGAAAGAAGAAGGC
GTTTAGAGACAGAGAAGGAGGGGAAAGCACCAGCGGTGGGGAATGGAAAG
GGGGGGCTGCAGCTGGAGAGAGTAAGTCATCGAGCACCGCGAGCAGAGCG
GCGACGACACCGAGGGCAACATGCCCCGCTGGTACCACAGGCGGTGGCGT
ATTCTCCAGCTGCAAGAACGGCTCGGTGTAGCTACCTTGTTCGCAATCGG
CGTGTGTGCCACCGTCCTGCCCTTCCTCGGCCTTTTCCTTCTTCTCGTCT
TGAGGCTTGTGCCGGCATCCACGGTGCTGGTGCGGGGAATCTCGGAAGCG
ATGCATAA

protein sequence of jgi.p|Nanoce1779_2|533792

>mRNA_10056-protein ID=mRNA_10056-protein|Name=jgi.p|Nanoce1779_2|533792|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MTQYLLHHDADKGSTSPLDTLLVVGTGSSRSAELAPSLPIRIDWTTMASA
LDPLQGGKLHHSPRGLHKRQQLESLYVLLASLLPSTSSPPIRIVDFGCGS
GNSSLALAALFPHCHFTLLDVKPTAIALAEQRVREAGLTNVSFFVGEADA
WEDPFDLGIGVHCCGCLTDRIQLQCLAREAAYILAPCCLGKIARSPGGVI
YPRSAWMRCGVKAPAFHAIGDLNTFFLSSYAILASAADHHSQHHAEDRIT
KHLLELDRQQAAREDFPGYSVYLTHLSPLSCSEKNIVLVGLPERWKGGRG
GEAGGKACEVVYTRQFLQLLVKEAAERKEERRRRLETEKEGKAPAVGNGK
GGLQLERVSHRAPRAERRRHRGQHAPLVPQAVAYSPAARTARCSYLVRNR
RVCHRPALPRPFPSSRLEACAGIHGAGAGNLGSDA*

mRNA from alignment at scaffold_46:473..2116+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10056 ID=mRNA_10056|Name=jgi.p|Nanoce1779_2|533792|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at scaffold_46:473..2116+ (Nannochloropsis oceanica)
ATGACGCAATATCTGCTCCATCACGACGCGGACAAAGGCAGTACCTCACC
ACTTGATACTCTCCTTGTGGTGGGCACAGGGTCGAGCAGAAGCGCGGAAC
TCGCTCCTTCCCTGCCTATCCGCATCGACTGGACAACAATGGCTTCAGCA
CTTGACCCACTGCAAGGGGGAAAGCTCCACCACTCACCACGAGGCCTGCA
CAAGCGGCAACAGCTCGAGTCCCTCTACGTACTTCTAGCGTCCCTACTTC
CATCAACGTCTTCCCCTCCCATCCGGATTGTTGATTTCGGCTGTGGGAGC
GGCAACTCCTCTTTGGCTCTCGCTGCCCTCTTTCCCCATTGCCACTTTAC
GCTTCTCGACGTAAAGCCCACTGCAATTGCTTTGGCGGAGCAACGCGTCA
GGGAGGCCGGCTTGACGAATGTCTCCTTTTTTGTCGGGGAAGCGGATGCC
TGGGAAGATCCCTTCGATCTTGGGATAGGCGTACATTGCTGCGGTTGTCT
CACGGACCGGATACAGCTGCAATGTTTAGCGCGAGAGGCCGCCTACATCC
TGGCCCCGTGCTGTCTGGGGAAGATTGCCCGTTCCCCGGGGGGGGTTATT
TACCCACGATCGGCATGGATGCGGTGTGGCGTCAAGGCGTGGGTGCTTGA
TGATCTTAGTGCCAAGATGGCGGCAGTAGGGGTGACGTGTCATGATGGAA
ATGGTGAAAGGGTTGATGATACGAAAACTGCCCGTGGTTGTGGTGGCGGA
GGTGCTGCTTCTGGTGTGGTTGAGAATGATATCGACGATGAAAGTGATGA
AAAGGAAGATGGACATCGTAGGGGAGGGGGCAACGGGGAGAAAGACGATA
GAGGTGAAAAGAATGAGCGAAATGAGGACGAGGAAGCAGGCGTGGCTCTT
GCGTGTACCGTCACCACCGCTAGCACGACTAATAATACCGTCAGCACCTC
GGAAAGAAGCAACCAGGCTCACAGTCCTGCCTTTCATGCAATTGGTGACC
TCAACACTTTCTTCTTGTCGTCCTATGCCATTTTGGCGTCGGCGGCCGAC
CATCACAGCCAACACCATGCAGAGGACAGGATCACAAAGCACCTGCTGGA
GTTGGACCGACAGCAAGCGGCGCGGGAGGATTTTCCAGGCTATTCGGTTT
ATCTCACACACCTTAGCCCTTTGAGCTGCAGCGAGAAGAATATTGTGCTT
GTGGGCTTGCCAGAGAGGTGGAAGGGGGGAAGAGGAGGGGAGGCTGGGGG
GAAGGCTTGTGAAGTTGTGTATACACGACAGTTTTTGCAGCTGTTGGTTA
AGGAGGCAGCCGAGCGGAAGGAGGAAAGAAGAAGGCGTTTAGAGACAGAG
AAGGAGGGGAAAGCACCAGCGGTGGGGAATGGAAAGGGGGGGCTGCAGCT
GGAGAGAGTAAGTCATCGAGCACCGCGAGCAGAGCGGCGACGACACCGAG
GGCAACATGCCCCGCTGGTACCACAGGCGGTGGCGTATTCTCCAGCTGCA
AGAACGGCTCGGTGTAGCTACCTTGTTCGCAATCGGCGTGTGTGCCACCG
TCCTGCCCTTCCTCGGCCTTTTCCTTCTTCTCGTCTTGAGGCTTGTGCCG
GCATCCACGGTGCTGGTGCGGGGAATCTCGGAAGCGATGCATAA

Coding sequence (CDS) from alignment at scaffold_46:473..2116+

>mRNA_10056 ID=mRNA_10056|Name=jgi.p|Nanoce1779_2|533792|organism=Nannochloropsis oceanica|type=CDS|length=2616bp|location=Sequence derived from alignment at scaffold_46:473..2116+ (Nannochloropsis oceanica)
ATGACGCAATATCTGCTCCATCACGACGCGGACAAAGGCAGTACCTCACC
ACTTGATACTCTCCTTGTGGTGGGCACAGGGTCGAGCAGAAGCGCGGAAC
TCGCTCCTTCCCTGCCTATCCGCATCGACTGGACAACAATGGCTTCAGCA
CTTGACCCACTGCAAGGGGGAAAGCTCCACCACTCACCACGAGGCCTGCA
CAAGCGGCAACAGCTCGAGTCCCTCTACGTACTTCTAGCGTCCCTACTTC
CATCAACGTCTTCCCCTCCCATCCGGATTGTTGATTTCGGCTGTGGGAGC
GGCAACTCCTCTTTGGCTCTCGCTGCCCTCTTTCCCCATTGCCACTTTAC
GCTTCTCGACGTAAAGCCCACTGCAATTGCTTTGGCGGAGCAACGCGTCA
GGGAGGCCGGCTTGACGAATGTCTCCTTTTTTGTCGGGGAAGCGGATGCC
TGGGAAGATCCCTTCGATCTTGGGATAGGCGTACATTGCTGCGGTTGTCT
CACGGACCGGATACAGCTGCAATGTTTAGCGCGAGAGGCCGCCTACATCC
TGGCCCCGTGCTGTCTGGGGAAGATTGCCCGTTCCCCGGGGGGGGTTATT
TACCCACGATCGGCATGGATGCGGTGTGGCGTCAAGGCTCCTGCCTTTCA
TGCAATTGGTGACCTCAACACTTTCTTCTTGTCGTCCTATGCCATTTTGG
CGTCGGCGGCCGACCATCACAGCCAACACCATGCAGAGGACAGGATCACA
AAGCACCTGCTGGAGTTGGACCGACAGCAAGCGGCGCGGGAGGATTTTCC
AGGCTATTCGGTTTATCTCACACACCTTAGCCCTTTGAGCTGCAGCGAGA
AGAATATTGTGCTTGTGGGCTTGCCAGAGAGGTGGAAGGGGGGAAGAGGA
GGGGAGGCTGGGGGGAAGGCTTGTGAAGTTGTGTATACACGACAGTTTTT
GCAGCTGTTGGTTAAGGAGGCAGCCGAGCGGAAGGAGGAAAGAAGAAGGC
GTTTAGAGACAGAGAAGGAGGGGAAAGCACCAGCGGTGGGGAATGGAAAG
GGGGGGCTGCAGCTGGAGAGAGTAAGTCATCGAGCACCGCGAGCAGAGCG
GCGACGACACCGAGGGCAACATGCCCCGCTGGTACCACAGGCGGTGGCGT
ATTCTCCAGCTGCAAGAACGGCTCGGTGTAGCTACCTTGTTCGCAATCGG
CGTGTGTGCCACCGTCCTGCCCTTCCTCGGCCTTTTCCTTCTTCTCGTCT
TGAGGCTTGTGCCGGCATCCACGGTGCTGGTGCGGGGAATCTCGGAAGCG
ATGCATAAATGACGCAATATCTGCTCCATCACGACGCGGACAAAGGCAGT
ACCTCACCACTTGATACTCTCCTTGTGGTGGGCACAGGGTCGAGCAGAAG
CGCGGAACTCGCTCCTTCCCTGCCTATCCGCATCGACTGGACAACAATGG
CTTCAGCACTTGACCCACTGCAAGGGGGAAAGCTCCACCACTCACCACGA
GGCCTGCACAAGCGGCAACAGCTCGAGTCCCTCTACGTACTTCTAGCGTC
CCTACTTCCATCAACGTCTTCCCCTCCCATCCGGATTGTTGATTTCGGCT
GTGGGAGCGGCAACTCCTCTTTGGCTCTCGCTGCCCTCTTTCCCCATTGC
CACTTTACGCTTCTCGACGTAAAGCCCACTGCAATTGCTTTGGCGGAGCA
ACGCGTCAGGGAGGCCGGCTTGACGAATGTCTCCTTTTTTGTCGGGGAAG
CGGATGCCTGGGAAGATCCCTTCGATCTTGGGATAGGCGTACATTGCTGC
GGTTGTCTCACGGACCGGATACAGCTGCAATGTTTAGCGCGAGAGGCCGC
CTACATCCTGGCCCCGTGCTGTCTGGGGAAGATTGCCCGTTCCCCGGGGG
GGGTTATTTACCCACGATCGGCATGGATGCGGTGTGGCGTCAAGGCTCCT
GCCTTTCATGCAATTGGTGACCTCAACACTTTCTTCTTGTCGTCCTATGC
CATTTTGGCGTCGGCGGCCGACCATCACAGCCAACACCATGCAGAGGACA
GGATCACAAAGCACCTGCTGGAGTTGGACCGACAGCAAGCGGCGCGGGAG
GATTTTCCAGGCTATTCGGTTTATCTCACACACCTTAGCCCTTTGAGCTG
CAGCGAGAAGAATATTGTGCTTGTGGGCTTGCCAGAGAGGTGGAAGGGGG
GAAGAGGAGGGGAGGCTGGGGGGAAGGCTTGTGAAGTTGTGTATACACGA
CAGTTTTTGCAGCTGTTGGTTAAGGAGGCAGCCGAGCGGAAGGAGGAAAG
AAGAAGGCGTTTAGAGACAGAGAAGGAGGGGAAAGCACCAGCGGTGGGGA
ATGGAAAGGGGGGGCTGCAGCTGGAGAGAGTAAGTCATCGAGCACCGCGA
GCAGAGCGGCGACGACACCGAGGGCAACATGCCCCGCTGGTACCACAGGC
GGTGGCGTATTCTCCAGCTGCAAGAACGGCTCGGTGTAGCTACCTTGTTC
GCAATCGGCGTGTGTGCCACCGTCCTGCCCTTCCTCGGCCTTTTCCTTCT
TCTCGTCTTGAGGCTTGTGCCGGCATCCACGGTGCTGGTGCGGGGAATCT
CGGAAGCGATGCATAA

Synonyms

Publications