jgi.p|Nanoce1779_2|608754, mRNA_10053 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608754
Unique NamemRNA_10053
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1190
Alignment locationscaffold_42:178661..180455 -

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Properties
Property NameValue
TranscriptId608840
TrackFilteredModels2
ProteinId608754
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:178661..180455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608754gene_10053Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608754mRNA_10053-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10053CDS_10053Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10053 ID=mRNA_10053|Name=jgi.p|Nanoce1779_2|608754|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp
AGGCATACATCCACAGGCACCGCCACCCACCCCCCCATCAAAAATGAGGC
CTTCCTTCTGTTTCCTTCTCCTGGCTTCTGCCATGCTCTCCGTGGGCACC
GCAGGCGCCGAGTCTGCATCCTACCTGCGCGGCTTGGAGGCTGCGAAGCA
GCCCCCAGCCCCCGTCGTAAACGGCGAGAAGCTCAAGATGCTCATCGACT
GTTTCGCCAGCTACATGCAAGACGCTTCCTACCGCCCGGACAACAGCCAG
CTGAACGGTTGCTGGGATTACGAGATCATTCACTGCCGCACCGATAGTGG
TCAACATGATCACTTCTGTCTCTTCAACGGCACGAACCATCTGCAAGACC
TGGGAGAGCTCTCTGCGGAGGAAAAGCCCAAGTGCTGGTTCAACTGTCAG
GTAAAGGAGGGAGGCTGGGAGGGAGGGGGGATGAGAGAGTGCCTCTCCGC
CTGTTCCAAGGGGGACTTCCACAAAATACACATTGTACCCCACCCCTTTC
CTCCCCTTTCTTCTTTTTTCCTAGATGGAGACATGCGATGCCTGGGACGT
TCCCCATACCACGGAGCAGGAGGAATGCGTCGACGACCTCTAGGATATCT
AGACACGCGGAAAGATCTCCCCTCCCTTCCCCTCCCTCCCTCCCTCCTTG
AATACCTGGTTACCTCAAGACAAGCCTTTTTTCTTCATATTTCTCGTTGA
TGTTTAAGCGGGGATAGAGGGAGAGAGAGAGAGAGGATGAAGGGGACTAC
ACGGTGAAGGTGCATCGGGCGGAAGAGGGAGGGTCGGGAGGGAAAAACGG
AAGTGATGTGTTGTGTTGTAATGTTGTGAAGTGTTTCCACACACCATCTG
GTAAAGCGAGAAATATTAAGAGAGGCCAATATGCGTTACCTGAGGGTGGC
TGTATCAGCTCAAAGATGAAAGTGTTCTGAAATTAGTGTTCTAGGACAAG
GAGGGGGCGGAGGGATTCTATGATGTGTTGTAATGTTTTAAGGTGTTTCT
ACACATCATTTGATAAAACAATTGATGTTTCGGGGGAATGTATGTTACCT
AAGGGTGGCTCTACCGGTTCAACGATAAAAGAACTCTGAAGTGAAAAGAG
GGAAGAAGAGACAAGGAGGAGAACATGGGAAGAAGGCGGGAGTGTGATTT
TGTGGACGTAAAAAAGAACAAGAAAACATTAAAGATAAAA
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protein sequence of jgi.p|Nanoce1779_2|608754

>mRNA_10053-protein ID=mRNA_10053-protein|Name=jgi.p|Nanoce1779_2|608754|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MRPSFCFLLLASAMLSVGTAGAESASYLRGLEAAKQPPAPVVNGEKLKML
IDCFASYMQDASYRPDNSQLNGCWDYEIIHCRTDSGQHDHFCLFNGTNHL
QDLGELSAEEKPKCWFNCQVKEGGWEGGGMRECLSACSKGDFHKIHIVPH
PFPPLSSFFLDGDMRCLGRSPYHGAGGMRRRPLGYLDTRKDLPSLPLPPS
LLEYLVTSRQAFFLHISR*
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mRNA from alignment at scaffold_42:178661..180455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10053 ID=mRNA_10053|Name=jgi.p|Nanoce1779_2|608754|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_42:178661..180455- (Nannochloropsis oceanica)
AGGCATACATCCACAGGCACCGCCACCCACCCCCCCATCAAAAATGAGGC
CTTCCTTCTGTTTCCTTCTCCTGGCTTCTGCCATGCTCTCCGTGGGCACC
GCAGGCGCCGAGTCTGCATCCTACCTGCGCGGCTTGGAGGCTGCGAAGCA
GCGTGAGTAGTCATAAGTAGAGAACATGTGTGGGATTATCACTTTATCAA
TGCGCGGGATCTAGACCATAGAAACAGGTTCACTCAGGCACATAAACATA
ATACAAGAGAGGGTGTATCAGTTATCATTCCGTCATTCATCTCATCGCCT
CGATCTATTTATATCATTCATCCCTCCACAAACACTTATGGACTCGTGCA
GCCCCAGCCCCCGTCGTAAACGGCGAGAAGCTCAAGATGCTCATCGACTG
TTTCGCCAGGTACGGAGAAAGTGGAAAAGGGGAGGTTAAAAGAAACTGTC
TATGCATGCAGTCACAAAGAAGGCAGGGAGGGGGGAAGGGAGGGACAGAA
GGAGGATGAGGGGCATATACGGAGCGCCCGACTTCAATGGACACGAGAGA
AGCAAGCCTTTGAAATCCTTCCTCCCTCTTTCACTCTCCCCCGTCATGGC
AGCTACATGCAAGACGCTTCCTACCGCCCGGACAACAGCCAGCTGAACGG
TTGCTGGGATTACGAGATCATTCACTGCCGCACCGATAGGTAACCACCGT
GATGGGACGGGAGGGAGTGCGAAAGGAAGGATATTCTTAATGGTAGGCAT
AACATCTCACAGAATATAAAAGAAGACGGAATTTTTCTCTCTTCTTGACG
GCTTGGGTGACTGAGGGCGAGTTGGGAGAGGTCATTCAATGGCAAGTTTT
CATTCTCACCCTCCCTCCCTCCGTCCACGACAATAACAACAAAAAACAAC
AGTGGTCAACATGATCACTTCTGTCTCTTCAACGGCACGAACCATCTGCA
AGACCTGGGAGAGCTCTCTGCGGAGGAAAAGCCCAAGTGCTGGTTCAACT
GTCAGGTAAAGGAGGGAGGCTGGGAGGGAGGGGGGATGAGAGAGTGCCTC
TCCGCCTGTTCCAAGGGGGACTTCCACAAAATACACATTGTACCCCACCC
CTTTCCTCCCCTTTCTTCTTTTTTCCTAGATGGAGACATGCGATGCCTGG
GACGTTCCCCATACCACGGAGCAGGAGGAATGCGTCGACGACCTCTAGGA
TATCTAGACACGCGGAAAGATCTCCCCTCCCTTCCCCTCCCTCCCTCCCT
CCTTGAATACCTGGTTACCTCAAGACAAGCCTTTTTTCTTCATATTTCTC
GTTGATGTTTAAGCGGGGATAGAGGGAGAGAGAGAGAGAGGATGAAGGGG
ACTACACGGTGAAGGTGCATCGGGCGGAAGAGGGAGGGTCGGGAGGGAAA
AACGGAAGTGATGTGTTGTGTTGTAATGTTGTGAAGTGTTTCCACACACC
ATCTGGTAAAGCGAGAAATATTAAGAGAGGCCAATATGCGTTACCTGAGG
GTGGCTGTATCAGCTCAAAGATGAAAGTGTTCTGAAATTAGTGTTCTAGG
ACAAGGAGGGGGCGGAGGGATTCTATGATGTGTTGTAATGTTTTAAGGTG
TTTCTACACATCATTTGATAAAACAATTGATGTTTCGGGGGAATGTATGT
TACCTAAGGGTGGCTCTACCGGTTCAACGATAAAAGAACTCTGAAGTGAA
AAGAGGGAAGAAGAGACAAGGAGGAGAACATGGGAAGAAGGCGGGAGTGT
GATTTTGTGGACGTAAAAAAGAACAAGAAAACATTAAAGATAAAA
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Coding sequence (CDS) from alignment at scaffold_42:178661..180455-

>mRNA_10053 ID=mRNA_10053|Name=jgi.p|Nanoce1779_2|608754|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_42:178661..180455- (Nannochloropsis oceanica)
TGGTCAACATGATCACTTCTGTCTCTTCAACGGCACGAACCATCTGCAAG
ACCTGGGAGAGCTCTCTGCGGAGGAAAAGCCCAAGTGCTGGTTCAACTGT
CAGGTAAAGGAGGGAGGCTGGGAGGGAGGGGGGATGAGAGAGTGCCTCTC
CGCCTGTTCCAAGGGGGACTTCCACAAAATACACATTGTACCCCACCCCT
TTCCTCCCCTTTCTTCTTTTTTCCTAGATGGAGACATGCGATGCCTGGGA
CGTTCCCCATACCACGGAGCAGGAGGAATGCGTCGACGACCTCTAGGATA
TCTAGACACGCGGAAAGATCTCCCCTCCCTTCCCCTCCCTCCCTCCCTCC
TTGAATACCTGGTTACCTCAAGACAAGCCTTTTTTCTTCATATTTCTCGT
TGACTACATGCAAGACGCTTCCTACCGCCCGGACAACAGCCAGCTGAACG
GTTGCTGGGATTACGAGATCATTCACTGCCGCACCGATAGCCCCAGCCCC
CGTCGTAAACGGCGAGAAGCTCAAGATGCTCATCGACTGTTTCGCCAGAT
GAGGCCTTCCTTCTGTTTCCTTCTCCTGGCTTCTGCCATGCTCTCCGTGG
GCACCGCAGGCGCCGAGTCTGCATCCTACCTGCGCGGCTTGGAGGCTGCG
AAGCAGCTGGTCAACATGATCACTTCTGTCTCTTCAACGGCACGAACCAT
CTGCAAGACCTGGGAGAGCTCTCTGCGGAGGAAAAGCCCAAGTGCTGGTT
CAACTGTCAGGTAAAGGAGGGAGGCTGGGAGGGAGGGGGGATGAGAGAGT
GCCTCTCCGCCTGTTCCAAGGGGGACTTCCACAAAATACACATTGTACCC
CACCCCTTTCCTCCCCTTTCTTCTTTTTTCCTAGATGGAGACATGCGATG
CCTGGGACGTTCCCCATACCACGGAGCAGGAGGAATGCGTCGACGACCTC
TAGGATATCTAGACACGCGGAAAGATCTCCCCTCCCTTCCCCTCCCTCCC
TCCCTCCTTGAATACCTGGTTACCTCAAGACAAGCCTTTTTTCTTCATAT
TTCTCGTTGACTACATGCAAGACGCTTCCTACCGCCCGGACAACAGCCAG
CTGAACGGTTGCTGGGATTACGAGATCATTCACTGCCGCACCGATAGCCC
CAGCCCCCGTCGTAAACGGCGAGAAGCTCAAGATGCTCATCGACTGTTTC
GCCAGATGAGGCCTTCCTTCTGTTTCCTTCTCCTGGCTTCTGCCATGCTC
TCCGTGGGCACCGCAGGCGCCGAGTCTGCATCCTACCTGCGCGGCTTGGA
GGCTGCGAAGCAGCTGGTCAACATGATCACTTCTGTCTCTTCAACGGCAC
GAACCATCTGCAAGACCTGGGAGAGCTCTCTGCGGAGGAAAAGCCCAAGT
GCTGGTTCAACTGTCAGGTAAAGGAGGGAGGCTGGGAGGGAGGGGGGATG
AGAGAGTGCCTCTCCGCCTGTTCCAAGGGGGACTTCCACAAAATACACAT
TGTACCCCACCCCTTTCCTCCCCTTTCTTCTTTTTTCCTAGATGGAGACA
TGCGATGCCTGGGACGTTCCCCATACCACGGAGCAGGAGGAATGCGTCGA
CGACCTCTAGGATATCTAGACACGCGGAAAGATCTCCCCTCCCTTCCCCT
CCCTCCCTCCCTCCTTGAATACCTGGTTACCTCAAGACAAGCCTTTTTTC
TTCATATTTCTCGTTGACTACATGCAAGACGCTTCCTACCGCCCGGACAA
CAGCCAGCTGAACGGTTGCTGGGATTACGAGATCATTCACTGCCGCACCG
ATAGCCCCAGCCCCCGTCGTAAACGGCGAGAAGCTCAAGATGCTCATCGA
CTGTTTCGCCAGATGAGGCCTTCCTTCTGTTTCCTTCTCCTGGCTTCTGC
CATGCTCTCCGTGGGCACCGCAGGCGCCGAGTCTGCATCCTACCTGCGCG
GCTTGGAGGCTGCGAAGCAGCTGGTCAACATGATCACTTCTGTCTCTTCA
ACGGCACGAACCATCTGCAAGACCTGGGAGAGCTCTCTGCGGAGGAAAAG
CCCAAGTGCTGGTTCAACTGTCAGGTAAAGGAGGGAGGCTGGGAGGGAGG
GGGGATGAGAGAGTGCCTCTCCGCCTGTTCCAAGGGGGACTTCCACAAAA
TACACATTGTACCCCACCCCTTTCCTCCCCTTTCTTCTTTTTTCCTAGAT
GGAGACATGCGATGCCTGGGACGTTCCCCATACCACGGAGCAGGAGGAAT
GCGTCGACGACCTCTAGGATATCTAGACACGCGGAAAGATCTCCCCTCCC
TTCCCCTCCCTCCCTCCCTCCTTGAATACCTGGTTACCTCAAGACAAGCC
TTTTTTCTTCATATTTCTCGTTGACTACATGCAAGACGCTTCCTACCGCC
CGGACAACAGCCAGCTGAACGGTTGCTGGGATTACGAGATCATTCACTGC
CGCACCGATAGCCCCAGCCCCCGTCGTAAACGGCGAGAAGCTCAAGATGC
TCATCGACTGTTTCGCCAGATGAGGCCTTCCTTCTGTTTCCTTCTCCTGG
CTTCTGCCATGCTCTCCGTGGGCACCGCAGGCGCCGAGTCTGCATCCTAC
CTGCGCGGCTTGGAGGCTGCGAAGCAGC
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Synonyms
Publications