jgi.p|Nanoce1779_2|608749, mRNA_10051 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608749
Unique Name	mRNA_10051
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1065
Alignment location	scaffold_42:174144..175208 -

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Properties


Property Name	Value
TranscriptId	608835
Track	FilteredModels2
ProteinId	608749

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:174144..175208 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608749	gene_10051	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608749	mRNA_10051-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10051	CDS_10051	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:174144..175208-
coding sequence from alignment at scaffold_42:174144..175208-

mRNA sequence

>mRNA_10051 ID=mRNA_10051|Name=jgi.p|Nanoce1779_2|608749|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
TTCCAAAAGGTAAGTTGTTTCTTTCTCGTTCCCTGCCTTCCCAATAAATT
CTTCTCAACCCCAGCTCTGAGCATAGTTATACGTGTAATCCCAGCATACG
TAATCCCACTTATTTGCATGCAACCTCCAAGCGATTACACGTGATCCCAA
AATGATTGCACGTGATCCCAGCATGAGTCCGCACCATTCCACTACATATG
TGTTTGAGTCCCACTTCCTTCGGCCTCTGTGTGGTCACCTTTCTCCCTTC
TCCTTTTTATAATTCAGCACTTCTGTCGTGAATCTCCCCGATAACCTGCC
CTCGTCCTTGTCCTCCCCCTCAACCTCATCCTCGTCCTTCTCCTCGTCCT
TCTCCCTCTTCTCCACGAGCCACCCCACGTGCAATATTTTCCAGTCCCCT
CTCCACTTTTCTTCTTTCCCTTCTTTAACTTCCTTTGGAGCCCACGCCTC
ATGCGCCGGTGGTCAAGCTACACCCATAGACTCTCCCCTTCATCTACTAT
CCTCCCTCCCACCTTCCTCTAGCTCTTGGGGTGTGGCTCATCTCGCCCGC
CCTTTAATGCTCAACTTATGTATGTATGCATCTATCTTTTTGTTTCTGTC
CTTTACTATCCCTACCCTTCTTCTCCTGGCTTTTTTTCCTTCCTTGTACA
ACTCTCTTTCGCTCTTTCATTCTGTTCGCTTTCCGCCGCTTTTCCTTGTG
TCCTTTTCTGCGCCTCAATATGTGTATGTAGGTCATATGCATGTAAATTT
TTTCTTCTCCACCAACCTATTTACACACAGCCCTTTCCTCCTCCTCTCTT
TCTCAATGTTTCCTTTGCTGTTTCTCGTCGCTGTTTCTCGTCCCTGGATC
TCACGGATATGTGATTTTAGGTCATATACACGTGATTTTTTTCTTCCCTT
CTTACCTATTTACACACAATCCCTTCTGACCCTCCTCCTCCCTCCCTCCC
TCCCTCCCTCCCGCCCGTCTTTCTCCTCCTTCTTCAACGACGCCGCGATT
GAAAGAGAAAAGACGGGAAAAGTGTGTTGCTTCCAACTCCTCCTCCTCCT
CCTCCTCCTCCTCCT

protein sequence of jgi.p|Nanoce1779_2|608749

>mRNA_10051-protein ID=mRNA_10051-protein|Name=jgi.p|Nanoce1779_2|608749|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MYVCIYLFVSVLYYPYPSSPGFFSFLVQLSFALSFCSLSAAFPCVLFCAS
ICVCRSYACKFFLLHQPIYTQPFPPPLFLNVSFAVSRRCFSSLDLTDM*

mRNA from alignment at scaffold_42:174144..175208-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10051 ID=mRNA_10051|Name=jgi.p|Nanoce1779_2|608749|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp|location=Sequence derived from alignment at scaffold_42:174144..175208- (Nannochloropsis oceanica)
TTCCAAAAGGTAAGTTGTTTCTTTCTCGTTCCCTGCCTTCCCAATAAATT
CTTCTCAACCCCAGCTCTGAGCATAGTTATACGTGTAATCCCAGCATACG
TAATCCCACTTATTTGCATGCAACCTCCAAGCGATTACACGTGATCCCAA
AATGATTGCACGTGATCCCAGCATGAGTCCGCACCATTCCACTACATATG
TGTTTGAGTCCCACTTCCTTCGGCCTCTGTGTGGTCACCTTTCTCCCTTC
TCCTTTTTATAATTCAGCACTTCTGTCGTGAATCTCCCCGATAACCTGCC
CTCGTCCTTGTCCTCCCCCTCAACCTCATCCTCGTCCTTCTCCTCGTCCT
TCTCCCTCTTCTCCACGAGCCACCCCACGTGCAATATTTTCCAGTCCCCT
CTCCACTTTTCTTCTTTCCCTTCTTTAACTTCCTTTGGAGCCCACGCCTC
ATGCGCCGGTGGTCAAGCTACACCCATAGACTCTCCCCTTCATCTACTAT
CCTCCCTCCCACCTTCCTCTAGCTCTTGGGGTGTGGCTCATCTCGCCCGC
CCTTTAATGCTCAACTTATGTATGTATGCATCTATCTTTTTGTTTCTGTC
CTTTACTATCCCTACCCTTCTTCTCCTGGCTTTTTTTCCTTCCTTGTACA
ACTCTCTTTCGCTCTTTCATTCTGTTCGCTTTCCGCCGCTTTTCCTTGTG
TCCTTTTCTGCGCCTCAATATGTGTATGTAGGTCATATGCATGTAAATTT
TTTCTTCTCCACCAACCTATTTACACACAGCCCTTTCCTCCTCCTCTCTT
TCTCAATGTTTCCTTTGCTGTTTCTCGTCGCTGTTTCTCGTCCCTGGATC
TCACGGATATGTGATTTTAGGTCATATACACGTGATTTTTTTCTTCCCTT
CTTACCTATTTACACACAATCCCTTCTGACCCTCCTCCTCCCTCCCTCCC
TCCCTCCCTCCCGCCCGTCTTTCTCCTCCTTCTTCAACGACGCCGCGATT
GAAAGAGAAAAGACGGGAAAAGTGTGTTGCTTCCAACTCCTCCTCCTCCT
CCTCCTCCTCCTCCT

Coding sequence (CDS) from alignment at scaffold_42:174144..175208-

>mRNA_10051 ID=mRNA_10051|Name=jgi.p|Nanoce1779_2|608749|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_42:174144..175208- (Nannochloropsis oceanica)
ATGTATGTATGCATCTATCTTTTTGTTTCTGTCCTTTACTATCCCTACCC
TTCTTCTCCTGGCTTTTTTTCCTTCCTTGTACAACTCTCTTTCGCTCTTT
CATTCTGTTCGCTTTCCGCCGCTTTTCCTTGTGTCCTTTTCTGCGCCTCA
ATATGTGTATGTAGGTCATATGCATGTAAATTTTTTCTTCTCCACCAACC
TATTTACACACAGCCCTTTCCTCCTCCTCTCTTTCTCAATGTTTCCTTTG
CTGTTTCTCGTCGCTGTTTCTCGTCCCTGGATCTCACGGATATGTGA

Synonyms

Publications