jgi.p|Nanoce1779_2|653263, mRNA_1005 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|653263
Unique Name	mRNA_1005
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1897
Alignment location	scaffold_2:993329..995304 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	653349
Track	FilteredModels2
ProteinId	653263

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:993329..995304 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653263	gene_1005	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653263	mRNA_1005-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1005	CDS_1005	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:993329..995304-
coding sequence from alignment at scaffold_2:993329..995304-

mRNA sequence

>mRNA_1005 ID=mRNA_1005|Name=jgi.p|Nanoce1779_2|653263|organism=Nannochloropsis oceanica|type=mRNA|length=1897bp
ATGCTCCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACGGG
ATTGGCCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTTCC
GGGCAGATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACCCG
TCGGGACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCATTT
GAAAGACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTCCG
CCGAGGGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGGCG
TTGTCTATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCATGC
GAGTCGACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGCCA
TTTCACTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAGAG
CTGGCTGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGGAT
GGAAGAACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGAGG
AAGAGCAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACGCG
TCAGAAGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTGAA
AGTAAAGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTTGC
GGTTATTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGTTT
TTAAATTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCAAA
TGAACCGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTGTT
CGGACAACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCCCT
ACGCTCCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACGGA
AGGCGAGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAATC
CTGGGGACGGCATTCCGGAATTTGAGTGGGATGGGCCCTCGTTGTTGTTG
GTGTTGGAGGGGGAGGGGGTGGGGGAGGAGTTTACGGAGGGGATGGAGAA
GAAGGTAGAGGACGGGAAGGAGGTCCTAATGTCGAAAGAGAAGGGTGATA
AAGTCTCGTTGAGGAAGGGGCAGGTGTTTTTCGTACCGGCGAATACGAGT
TTAGTGTTGACTGGAAAGGAAGGAGGGGCCCCTTTACGACTGACGATTGC
CCATTCAAATCTCAGGGGGCGTCGTTAGGAAGGAGTGACGGAGACGGGGA
GGGAAATAGGGCCGTACATAGGTTTATAAATGTATGCAGACATACACAGA
ATCACATATACACACACAGTGTGGGAAGAAAGATGAGACGGCTTAGAGGA
GTCCCACCAAAATTGAGGACTGAGGACGAAGACGAGAAGACGGGAAAATG
GCGCGAACTGGCTTTGGACTCGGAGGGAATGGGGGAGGGATGGATTGACA
GACGGACGACGAACACATTCATCTCACCCCTGACCGCATATATGAGGGGA
AAGGAGAGATGCAGGAGGGAGAGGACAAAGACGAATCGCGCACAAGAAAC
CAACGCAAGGAAAAGGCATAAGCAACCAAGCGAAGGAAGGAGCTGTCGTC
AGCCTTATCTGGACAAACAAAGGAAGCGGAGACAGAGGGGGGGGAGGATG
GAAAGAAGAGAGAAGGAGATGAAAAACACGAAGTTTATACACAATTGCAT
ACACTACCATGACTATACCTTTCGAACCACAGAGCAAGGAAAAACAGAAG
ATATACACCCAGACAAGCAAGCGTGAAATGCTGTCCAGATAAAGTGAGAG
ACATGACCGGAGGCAAGGGAAGAGAAAGAATCGAAATCCAAGATTGA

protein sequence of jgi.p|Nanoce1779_2|653263

>mRNA_1005-protein ID=mRNA_1005-protein|Name=jgi.p|Nanoce1779_2|653263|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MLRLECAIQTYAWGKTGLASAVAQLKQEGENNFRADDKTRYAELWMGTHP
SGPSYVVFGEDDKKVHLKDYLKAHPRALGSEPSAEGDLPFMFKVLSISKA
LSIQAHPDKRLAEQLHASRPQVYKDGNHKPEMAISLTDFEALCGFRPLKE
LAAHLVMYPELGALVGMEEQALLEKVAGEEAEEEEQRKALKAVFSSYMHA
SEERTTEQVAALAARLKVKEEKGGASDLDRLILRLLGHFPGDCGVFGPMF
LNYVRLGPGKAFVMEANEPHAYLSGDILECMACSDNVVRVGLTPKYRDVP
TLLGMLSYASGPMTVTEGEVLREEAGKEHRRFNPGDGIPEFEWDGPSLLL
VLEGEGVGEEFTEGMEKKVEDGKEVLMSKEKGDKVSLRKGQVFFVPANTS
LVLTGKEGGAPLRLTIAHSNLRGRR*

mRNA from alignment at scaffold_2:993329..995304-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1005 ID=mRNA_1005|Name=jgi.p|Nanoce1779_2|653263|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp|location=Sequence derived from alignment at scaffold_2:993329..995304- (Nannochloropsis oceanica)
ATGCTCCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACGGG
ATTGGCCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTTCC
GGGCAGATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACCCG
TCGGGACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCATTT
GAAAGACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTCCG
CCGAGGGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGGCG
TTGTCTATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCATGC
GAGTCGACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGCCA
TTTCACTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAGAG
CTGGCTGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGGAT
GGAAGAACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGAGG
AAGAGCAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACGCG
TCAGAAGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTGAA
AGTAAAGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTTGC
GGTTATTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGTTT
TTAAATTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCAAA
TGAACCGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTGTT
CGGACAACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCCCT
ACGCTCCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACGGA
AGGCGAGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAATC
CTGGGGACGGCATTCCGGAATTTGAGGTGGAAACAATAAAGTTGGAAGGA
GGGGGGGGGGGCAGGGGAGGGAGGGGATGGGGGAGGGTCGTTTACGTGGG
AAAAGTGGGATGGGCCCTCGTTGTTGTTGGTGTTGGAGGGGGAGGGGGTG
GGGGAGGAGTTTACGGAGGGGATGGAGAAGAAGGTAGAGGACGGGAAGGA
GGTCCTAATGTCGAAAGAGAAGGGTGATAAAGTCTCGTTGAGGAAGGGGC
AGGTGTTTTTCGTACCGGCGAATACGAGTTTAGTGTTGACTGGAAAGGAA
GGAGGGGCCCCTTTACGACTGACGATTGCCCATTCAAATCTCAGGGGGCG
TCGTTAGGAAGGAGTGACGGAGACGGGGAGGGAAATAGGGCCGTACATAG
GTTTATAAATGTATGCAGACATACACAGAATCACATATACACACACAGTG
TGGGAAGAAAGATGAGACGGCTTAGAGGAGTCCCACCAAAATTGAGGACT
GAGGACGAAGACGAGAAGACGGGAAAATGGCGCGAACTGGCTTTGGACTC
GGAGGGAATGGGGGAGGGATGGATTGACAGACGGACGACGAACACATTCA
TCTCACCCCTGACCGCATATATGAGGGGAAAGGAGAGATGCAGGAGGGAG
AGGACAAAGACGAATCGCGCACAAGAAACCAACGCAAGGAAAAGGCATAA
GCAACCAAGCGAAGGAAGGAGCTGTCGTCAGCCTTATCTGGACAAACAAA
GGAAGCGGAGACAGAGGGGGGGGAGGATGGAAAGAAGAGAGAAGGAGATG
AAAAACACGAAGTTTATACACAATTGCATACACTACCATGACTATACCTT
TCGAACCACAGAGCAAGGAAAAACAGAAGATATACACCCAGACAAGCAAG
CGTGAAATGCTGTCCAGATAAAGTGAGAGACATGACCGGAGGCAAGGGAA
GAGAAAGAATCGAAATCCAAGATTGA

Coding sequence (CDS) from alignment at scaffold_2:993329..995304-

>mRNA_1005 ID=mRNA_1005|Name=jgi.p|Nanoce1779_2|653263|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_2:993329..995304- (Nannochloropsis oceanica)
TGGGATGGGCCCTCGTTGTTGTTGGTGTTGGAGGGGGAGGGGGTGGGGGA
GGAGTTTACGGAGGGGATGGAGAAGAAGGTAGAGGACGGGAAGGAGGTCC
TAATGTCGAAAGAGAAGGGTGATAAAGTCTCGTTGAGGAAGGGGCAGGTG
TTTTTCGTACCGGCGAATACGAGTTTAGTGTTGACTGGAAAGGAAGGAGG
GGCCCCTTTACGACTGACGATTGCCCATTCAAATCTCAGGGGGCGTCGTT
AGATGCTCCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACG
GGATTGGCCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTT
CCGGGCAGATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACC
CGTCGGGACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCAT
TTGAAAGACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTC
CGCCGAGGGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGG
CGTTGTCTATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCAT
GCGAGTCGACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGC
CATTTCACTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAG
AGCTGGCTGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGG
ATGGAAGAACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGA
GGAAGAGCAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACG
CGTCAGAAGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTG
AAAGTAAAGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTT
GCGGTTATTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGT
TTTTAAATTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCA
AATGAACCGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTG
TTCGGACAACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCC
CTACGCTCCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACG
GAAGGCGAGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAA
TCCTGGGGACGGCATTCCGGAATTTGAGTGGGATGGGCCCTCGTTGTTGT
TGGTGTTGGAGGGGGAGGGGGTGGGGGAGGAGTTTACGGAGGGGATGGAG
AAGAAGGTAGAGGACGGGAAGGAGGTCCTAATGTCGAAAGAGAAGGGTGA
TAAAGTCTCGTTGAGGAAGGGGCAGGTGTTTTTCGTACCGGCGAATACGA
GTTTAGTGTTGACTGGAAAGGAAGGAGGGGCCCCTTTACGACTGACGATT
GCCCATTCAAATCTCAGGGGGCGTCGTTAGATGCTCCGTCTCGAATGCGC
GATTCAGACATATGCGTGGGGCAAAACGGGATTGGCCAGCGCGGTGGCTC
AGCTCAAACAAGAAGGGGAAAACAATTTCCGGGCAGATGACAAAACGCGG
TACGCGGAACTGTGGATGGGCACGCACCCGTCGGGACCGTCGTACGTGGT
GTTTGGGGAGGATGATAAAAAAGTGCATTTGAAAGACTACCTTAAGGCCC
ATCCCCGAGCCTTGGGCAGCGAGCCCTCCGCCGAGGGGGATCTGCCGTTT
ATGTTCAAGGTCCTATCGATTTCCAAGGCGTTGTCTATTCAAGCACACCC
GGACAAGAGGCTAGCTGAACAGTTGCATGCGAGTCGACCGCAGGTGTATA
AGGACGGGAATCATAAACCGGAAATGGCCATTTCACTGACAGATTTCGAG
GCCCTATGTGGATTTCGTCCCTTGAAAGAGCTGGCTGCGCATCTTGTGAT
GTACCCTGAGCTTGGGGCTTTGGTAGGGATGGAAGAACAGGCGCTGCTTG
AAAAGGTGGCGGGGGAGGAGGCGGAAGAGGAAGAGCAGAGGAAGGCGTTG
AAAGCGGTGTTTTCCTCATATATGCACGCGTCAGAAGAACGGACGACGGA
GCAGGTGGCGGCATTGGCGGCACGGTTGAAAGTAAAGGAGGAGAAGGGAG
GGGCGAGTGACTTGGATAGGCTGATTTTGCGGTTATTGGGCCACTTTCCG
GGGGACTGCGGGGTCTTCGGTCCGATGTTTTTAAATTATGTGAGGCTGGG
ACCGGGGAAAGCATTTGTAATGGAGGCAAATGAACCGCACGCGTATCTGA
GTGGGGATATATTGGAGTGTATGGCGTGTTCGGACAACGTGGTTCGGGTA
GGGTTGACACCCAAATATCGCGATGTCCCTACGCTCCTTGGGATGTTGTC
GTACGCCTCGGGACCCATGACAGTGACGGAAGGCGAGGTCCTGAGGGAGG
AAGCAGGCAAGGAGCATAGGCGCTTCAATCCTGGGGACGGCATTCCGGAA
TTTGAG

Synonyms

Publications