jgi.p|Nanoce1779_2|608726, mRNA_10046 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608726
Unique Name	mRNA_10046
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	895
Alignment location	scaffold_42:155098..156245 -

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Properties


Property Name	Value
TranscriptId	608812
Track	FilteredModels2
ProteinId	608726

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:155098..156245 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608726	gene_10046	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608726	mRNA_10046-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10046	CDS_10046	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:155098..156245-
coding sequence from alignment at scaffold_42:155098..156245-

mRNA sequence

>mRNA_10046 ID=mRNA_10046|Name=jgi.p|Nanoce1779_2|608726|organism=Nannochloropsis oceanica|type=mRNA|length=895bp
CACCAGATGCGGAGCTGCGGCGGCTGCCACTGCTGCTCCTTTTCCTGCCC
ATGCTAATGCTACTGCACTGCTGCTGCTGCTGTCGCTGCTTCAATTGTTG
CTGCTGCTACTGCCGCCCCGACTGTAAGAGCTGCTGCGACCATTGCACGC
ATGACTTTTTAATGGGAAAATGCCATATCAAGACACGAGCAGACAGAAAG
ACAAACGACAGCATCGAAATAATATCGACAGGAATTTTACCATTAGCTTT
GGGCTTAACTTATGCATGTCATTAGTCTGTGAGCGTCGTGGCGCGTTCCT
TGTCTTGATTGATGTAGTTTTCCTCCACATATCCCTCCTTCGTCTCTCCC
CCCCGCACACCTTCCCTCTCTCGCTCCTTTTTCTCCTCTTTCTCCCCAAC
ACCAAAATATCGTACTTCGTCGTTCCTCGTCGTCAGTCATAACCAAACAA
ATACTCGTACAACTCATTCTTTCTTAATGCATGATCCTTATCCCTCTCAC
CTTCCCCCGACCTCACAACCGCCGCCTTCGTGGCCGCCCCTCCGAAGCGG
GGGTAGCAGGCGTGGCGGGCATAGATGGCTCAGCCTTTGCACTCTTCTTC
TTTCCCACATTCCCTCCCTTCTTCACCCCTTCCTCCGCTTCTTCCCCAAA
TACAAGTGCTTTCCAGGACTGGAAAAAGAGGTAGGGAGGGAGGAGAGCCC
AAGGGGCGTTCATCCCCACGACGAGGAACCAAAAGAGGAAAGGATCGGAA
CTAAGATGACCATGCCACCCCTCCTTCGTGAAGAGCGGGTGGAGAACAAA
CCAGACAAGGCCGTAGATATGACAAGTGCACAGAACCAACTGCAGGGGAT
GCCGCCACGATTTCTGGTGCGTGACGGCATAGGCAATAGCGAAGC

protein sequence of jgi.p|Nanoce1779_2|608726

>mRNA_10046-protein ID=mRNA_10046-protein|Name=jgi.p|Nanoce1779_2|608726|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MPYQDTSRQKDKRQHRNNIDRNFTISFGLNLCMSLVCERRGAFLVLIDVV
FLHISLLRLSPPHTFPLSLLFLLFLPNTKISYFVVPRRQS*

mRNA from alignment at scaffold_42:155098..156245-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10046 ID=mRNA_10046|Name=jgi.p|Nanoce1779_2|608726|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at scaffold_42:155098..156245- (Nannochloropsis oceanica)
CACCAGATGCGGAGCTGCGGCGGCTGCCACTGCTGCTCCTTTTCCTGCCC
ATGCTAATGCTACTGCACTGCTGCTGCTGCTGTCGCTGCTTCAATTGTTG
CTGCTGCTACTGCCGCCCCGACTGTAAGAGCTGCTGCGACCATTGCACGC
ATGACTTTTTAATGGGAAAATGCCATATCAAGACACGAGCAGACAGAAAG
ACAAACGACAGCATCGAAATAATATCGACAGGAATTTTACCATTAGCTTT
GGGCTTAACTTATGCATGTCATTAGTCTGTGAGCGTCGTGGCGCGTTCCT
TGTCTTGATTGATGTAGTTTTCCTCCACATATCCCTCCTTCGTCTCTCCC
CCCCGCACACCTTCCCTCTCTCGCTCCTTTTTCTCCTCTTTCTCCCCAAC
ACCAAAATATCGTACTTCGTCGTTCCTCGTCGTCAGTCATAACCAAACAA
ATACTCGTACAACTCATTCTTTCTTAATGCATGATCCTTATCCCTCTCAC
CTTCCCCCGACCTCACAACCGCCGCCTTCGTGGCCGCCCCTCCGAAGCGG
GGGTAGCAGGCGTGGCGGGCATAGATGGCTCAGCCTTTGCACTCTTCTTC
TTTCCCACATTCCCTCCCTTCTTCACCCCTTCCTCCGCTTCTTCCCCAAA
TACAAGTGCTTTCCAGGACTGGAAAAAGAGGTAGGGAGGGAGGAGAGCCC
AAGGGGCGTTCATCCCCACGACGAGGAACCAAAAGAGGAAAGGATCGGAA
CTAAGATGACCATGCCACCCCTCCTTCGTGAAGAGCGGGTGGAGAACAAA
CCAGACAAGGCCGTAGATCTAGGGAAGGAGGGAAGGAGAGAAGGAGAGCG
GATGAAGGACGGGAGGGGAGGGAGGGGAGGGAGGGGGGATTAGGCAAGCT
TGCAGCTGAAGCAATCAAGAAACACCATGGGGTAACGGGATGGGAGTGAG
AAAAGGAGGAGATCAAGATATGGAGAAGGTGAAAGATAGGCACCGACATA
CAGACATACGAAATGACACACACAAGGGAGGGAGGGAGGGAGGGAAGGAG
GGAAGAAAAAGCCGGACGCACATGACAAGTGCACAGAACCAACTGCAGGG
GATGCCGCCACGATTTCTGGTGCGTGACGGCATAGGCAATAGCGAAGC

Coding sequence (CDS) from alignment at scaffold_42:155098..156245-

>mRNA_10046 ID=mRNA_10046|Name=jgi.p|Nanoce1779_2|608726|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_42:155098..156245- (Nannochloropsis oceanica)
ATGCCATATCAAGACACGAGCAGACAGAAAGACAAACGACAGCATCGAAA
TAATATCGACAGGAATTTTACCATTAGCTTTGGGCTTAACTTATGCATGT
CATTAGTCTGTGAGCGTCGTGGCGCGTTCCTTGTCTTGATTGATGTAGTT
TTCCTCCACATATCCCTCCTTCGTCTCTCCCCCCCGCACACCTTCCCTCT
CTCGCTCCTTTTTCTCCTCTTTCTCCCCAACACCAAAATATCGTACTTCG
TCGTTCCTCGTCGTCAGTCATAA

Synonyms

Publications