jgi.p|Nanoce1779_2|308602, mRNA_10045 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|308602
Unique NamemRNA_10045
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length873
Alignment locationscaffold_42:154525..155870 +

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Properties
Property NameValue
TranscriptId308688
TrackFilteredModels2
ProteinId308602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:154525..155870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|308602gene_10045Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|308602mRNA_10045-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10045CDS_10045Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10045 ID=mRNA_10045|Name=jgi.p|Nanoce1779_2|308602|organism=Nannochloropsis oceanica|type=mRNA|length=873bp
TCTACGGTGTCACATGCACTTGTCGATGCTCCCCCCAACCTCTGTCCAAT
TCATGTACGTAAAAAGAGAAGGAGGAAGGGAGGGAGGGAAGAAGATGTCA
ACCGGAGTGTCTCCGGTTGATTGTCACGCACAATGAAAGTATAATGTTGC
CTCCCTCCATCCCTCCCTCCATCCCTCCCTCCATCCCTCCCCCTAGATCT
GGATTGAGGGGTCCTTCGTCTTCCGTCGCGAGCAGAGCTTCCTTAAGCCC
GGCCTCGATTTTTATGCTTCTGGTGATTTCCGCTATGGCTCGCCAATGGA
GGCGGGCACCGCAGCTATGGAAGCTATCACCGCTATTTTCGATGGGCCCA
TGTGCTTCGCTATTGCCTATGCCGTCACGCACCAGAAATCGTGGCGGCAT
CCCCTGCAGTTGGTTCTGTGCACTTGTCATATCTACGGCCTTGTCTGGTT
TGTTCTCCACCCGCTCTTCACGAAGGAGGGGTGGCATGGTCATCTTAGTT
CCGATCCTTTCCTCTTTTGGTTCCTCGTCGTGGGGATGAACGCCCCTTGG
GCTCTCCTCCCTCCCTACCTCTTTTTCCAGTCCTGGAAAGCACTTGTATT
TGGGGAAGAAGCGGAGGAAGGGGTGAAGAAGGGAGGGAATGTGGGAAAGA
AGAAGAGTGCAAAGGCTGAGCCATCTATGCCCGCCACGCCTGCTACCCCC
GCTTCGGAGGGGCGGCCACGAAGGCGGCGGTTGTGAGGTCGGGGGAAGGT
GAGAGGGATAAGGATCATGCATTAAGAAAGAATGAGTTGTACGAGTATTT
GTTTGGTTATGACTGACGACGAGGAACGACGAAGTACGATATTTTGGTGT
TGGGGAGAAAGAGGAGAAAAAGG
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protein sequence of jgi.p|Nanoce1779_2|308602

>mRNA_10045-protein ID=mRNA_10045-protein|Name=jgi.p|Nanoce1779_2|308602|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLV
WFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKAL
VFGEEAEEGVKKGGNVGKKKSAKAEPSMPATPATPASEGRPRRRRL*
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mRNA from alignment at scaffold_42:154525..155870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10045 ID=mRNA_10045|Name=jgi.p|Nanoce1779_2|308602|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at scaffold_42:154525..155870+ (Nannochloropsis oceanica)
TCTACGGTGTCACATGCACTTGTCGATGCTCCCCCCAACCTCTGTCCAAT
TCATGTACGTAAAAAGAGAAGGAGGAAGGGAGGGAGGGAAGAAGATGTCA
ACCGGAGTGTCTCCGGTTGATTGTCACGCACAATGAAAGTATAATGTTGC
CTCCCTCCATCCCTCCCTCCATCCCTCCCTCCATCCCTCCCCCTAGATCT
GGATTGAGGGGTCCTTCGTCTTCCGTCGCGAGCAGAGCTTCCTTAAGCCC
GGCCTCGATTTTTATGCTTCTGGTGATTTCCGCTATGGCTCGCCAATGGA
GGTAAGCAAACCTTCCCACCCTCCCTTCCCCCCCCCCCTTCCTCCCAATC
GTGTCCGCCTCGTCGAGCCCGTCACTCTGACACCTGCGTCTTCCTATCAA
TGACATGCACTTCCGGACATTATCTCAACCCTCCTCCCCCTTTTTCCCCC
CCTCCCTCCCTCTCTCTCTCTCCCTCCCTTCTTTTTCTCCTTTCCCTCCC
TTCCTCCCCTCTTTTTCTCAGGCGGGCACCGCAGCTATGGAAGCTATCAC
CGCTATTTTCGATGGGCCCATGTGCTTCGCTATTGCCTATGCCGTCACGC
ACCAGAAATCGTGGCGGCATCCCCTGCAGTTGGTTCTGTGCACTTGTCAT
GTGCGTCCGGCTTTTTCTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTTGT
GTGTGTCATTTCGTATGTCTGTATGTCGGTGCCTATCTTTCACCTTCTCC
ATATCTTGATCTCCTCCTTTTCTCACTCCCATCCCGTTACCCCATGGTGT
TTCTTGATTGCTTCAGCTGCAAGCTTGCCTAATCCCCCCTCCCTCCCCTC
CCTCCCCTCCCGTCCTTCATCCGCTCTCCTTCTCTCCTTCCCTCCTTCCC
TAGATCTACGGCCTTGTCTGGTTTGTTCTCCACCCGCTCTTCACGAAGGA
GGGGTGGCATGGTCATCTTAGTTCCGATCCTTTCCTCTTTTGGTTCCTCG
TCGTGGGGATGAACGCCCCTTGGGCTCTCCTCCCTCCCTACCTCTTTTTC
CAGTCCTGGAAAGCACTTGTATTTGGGGAAGAAGCGGAGGAAGGGGTGAA
GAAGGGAGGGAATGTGGGAAAGAAGAAGAGTGCAAAGGCTGAGCCATCTA
TGCCCGCCACGCCTGCTACCCCCGCTTCGGAGGGGCGGCCACGAAGGCGG
CGGTTGTGAGGTCGGGGGAAGGTGAGAGGGATAAGGATCATGCATTAAGA
AAGAATGAGTTGTACGAGTATTTGTTTGGTTATGACTGACGACGAGGAAC
GACGAAGTACGATATTTTGGTGTTGGGGAGAAAGAGGAGAAAAAGG
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Coding sequence (CDS) from alignment at scaffold_42:154525..155870+

>mRNA_10045 ID=mRNA_10045|Name=jgi.p|Nanoce1779_2|308602|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_42:154525..155870+ (Nannochloropsis oceanica)
ATGGAGGCGGGCACCGCAGCTATGGAAGCTATCACCGCTATTTTCGATGG
GCCCATGTGCTTCGCTATTGCCTATGCCGTCACGCACCAGAAATCGTGGC
GGCATCCCCTGCAGTTGGTTCTGTGCACTTGTCATATCTACGGCCTTGTC
TGGTTTGTTCTCCACCCGCTCTTCACGAAGGAGGGGTGGCATGGTCATCT
TAGTTCCGATCCTTTCCTCTTTTGGTTCCTCGTCGTGGGGATGAACGCCC
CTTGGGCTCTCCTCCCTCCCTACCTCTTTTTCCAGTCCTGGAAAGCACTT
GTATTTGGGGAAGAAGCGGAGGAAGGGGTGAAGAAGGGAGGGAATGTGGG
AAAGAAGAAGAGTGCAAAGGCTGAGCCATCTATGCCCGCCACGCCTGCTA
CCCCCGCTTCGGAGGGGCGGCCACGAAGGCGGCGGTTGTGAATGGAGGCG
GGCACCGCAGCTATGGAAGCTATCACCGCTATTTTCGATGGGCCCATGTG
CTTCGCTATTGCCTATGCCGTCACGCACCAGAAATCGTGGCGGCATCCCC
TGCAGTTGGTTCTGTGCACTTGTCATATCTACGGCCTTGTCTGGTTTGTT
CTCCACCCGCTCTTCACGAAGGAGGGGTGGCATGGTCATCTTAGTTCCGA
TCCTTTCCTCTTTTGGTTCCTCGTCGTGGGGATGAACGCCCCTTGGGCTC
TCCTCCCTCCCTACCTCTTTTTCCAGTCCTGGAAAGCACTTGTATTTGGG
GAAGAAGCGGAGGAAGGGGTGAAGAAGGGAGGGAATGTGGGAAAGAAGAA
GAGTGCAAAGGCTGAGCCATCTATGCCCGCCACGCCTGCTACCCCCGCTT
CGGAGGGGCGGCCACGAAGGCGGCGGTTGTGAATGGAGGCGGGCACCGCA
GCTATGGAAGCTATCACCGCTATTTTCGATGGGCCCATGTGCTTCGCTAT
TGCCTATGCCGTCACGCACCAGAAATCGTGGCGGCATCCCCTGCAGTTGG
TTCTGTGCACTTGTCATATCTACGGCCTTGTCTGGTTTGTTCTCCACCCG
CTCTTCACGAAGGAGGGGTGGCATGGTCATCTTAGTTCCGATCCTTTCCT
CTTTTGGTTCCTCGTCGTGGGGATGAACGCCCCTTGGGCTCTCCTCCCTC
CCTACCTCTTTTTCCAGTCCTGGAAAGCACTTGTATTTGGGGAAGAAGCG
GAGGAAGGGGTGAAGAAGGGAGGGAATGTGGGAAAGAAGAAGAGTGCAAA
GGCTGAGCCATCTATGCCCGCCACGCCTGCTACCCCCGCTTCGGAGGGGC
GGCCACGAAGGCGGCGGTTGTGA
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Synonyms
Publications