jgi.p|Nanoce1779_2|608725, mRNA_10044 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608725
Unique NamemRNA_10044
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length724
Alignment locationscaffold_42:153604..155122 +

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Properties
Property NameValue
TranscriptId608811
TrackFilteredModels2
ProteinId608725
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:153604..155122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608725gene_10044Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608725mRNA_10044-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10044CDS_10044Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10044 ID=mRNA_10044|Name=jgi.p|Nanoce1779_2|608725|organism=Nannochloropsis oceanica|type=mRNA|length=724bp
ACAGGGGCACACTCTCGTGGCAACTCGGTAGGAGCAACGTCCATTCCCGC
CGAGCTGCTTTAACACCGTCACGGCTTCCTTCTTAAGCGCCAGCAGAACC
TACATGCACTTGAACCCAAAATATAGCAAGACCATGGAGAGCATCAAGCA
ATATGCCTCTGCGGCCTACGAATCCGTCGCTGAGCTAACCAACAACTACG
CTGGCGGTATGGCTGCGCCAAAGGCGCCAGTAGTCATGACGCTGATGGAT
TGGATGAAAGTCTTGCTGGGCCTAGGTGTGAGCGTTTCCCTCGTCTTCGG
CGTGCTATTTTGGACAACGAAAAAGGACAAGAGCCTGCAAACGCATCTCC
TTACACCCGTCAACTTTTGGTTCGTGCTTTCGGGGGTCATTCATGTAAGT
TAGAGGAGGAGGAAGGAAAGAGAAAGGGAGGAGGATATGAAGTAGGGGGA
TGGATGGATAGAGTCCGTCAAGAACGTTTCAATTCTTCTCTACGGTGTCA
CATGCACTTGTCGATGCTCCCCCCAACCTCTGTCCAATTCATATCTGGAT
TGAGGGGTCCTTCGTCTTCCGTCGCGAGCAGAGCTTCCTTAAGCCCGGCC
TCGATTTTTATGCTTCTGGTGATTTCCGCTATGGCTCGCCAATGGAGGCG
GGCACCGCAGCTATGGAAGCTATCACCGCTATTTTCGATGGGCCCATGTG
CTTCGCTATTGCCTATGCCGTCAC
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protein sequence of jgi.p|Nanoce1779_2|608725

>mRNA_10044-protein ID=mRNA_10044-protein|Name=jgi.p|Nanoce1779_2|608725|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MHLNPKYSKTMESIKQYASAAYESVAELTNNYAGGMAAPKAPVVMTLMDW
MKVLLGLGVSVSLVFGVLFWTTKKDKSLQTHLLTPVNFWFVLSGVIHVS*
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mRNA from alignment at scaffold_42:153604..155122+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10044 ID=mRNA_10044|Name=jgi.p|Nanoce1779_2|608725|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp|location=Sequence derived from alignment at scaffold_42:153604..155122+ (Nannochloropsis oceanica)
ACAGGGGCACACTCTCGTGGCAACTCGGTAGGAGCAACGTCCATTCCCGC
CGAGCTGCTTTAACACCGTCACGGCTTCCTTCTTAAGCGCCAGCAGAACC
TACATGCACTTGAACCCAAAATATAGCAAGACCATGGAGGTAATCACGTT
TCTTGGGTAGAGATGAGGCTTCATTGTCCTCCTCCTCTCCTCCTCTCGTC
TGCTTACCGCAACCGACCACCGCCCCCCCTCCCTCCCATACCCTGTCTTT
CTTCGTAACAGAGCATCAAGCAATATGCCTCTGCGGCCTACGAATCCGTC
GCTGAGCTAACCAACAACTACGCTGGCGGTATGGCTGCGCCAAAGGCGCC
AGTAGTCATGACGCTGATGGTAATAAGGAGGGAGGGACGGAGGGAAGGGG
CTGTGACTGTGACACGTCGATCCTTCTTTGTTTCACCCTCATTTCACTCA
TGCACCCGTATTCTTCTTTCATCTCCCCCTCTTTCTTCATATCCTCGTAG
GATTGGATGAAAGTCTTGCTGGGCCTAGGTGTGAGCGTTTCCCTCGTCTT
CGGCGTGCTATTTTGGGTATGGAAGAAGGGAGGAGGGAGGGAAGGGAGGA
AGGCACGGTGGGCTCGAATGGAGTTTAATCCCTCACACAATGGAGGCGCG
TCTGATAGAGAACAAGAAGCTACCACATGCCCTTTTTATAACCTTGCCTT
CCCTACCCTCCCTCCCTTCTTCCCTCCCTCCCGCCTTCCTTTTCAGACAA
CGAAAAAGGACAAGAGCCTGCAAACGCATCTCCTTACACCCGTCAACTTT
TGGTTCGTGCTTTCGGGGGTCATTCATGTAAGTTAGAGGAGGAGGAAGGA
AAGAGAAAGGGAGGAGGATATGAAGTAGGGGGATGGATGGATAGAGTCCG
TCAAGAACGTTTCAATTCTTCTCTACGGTGTCACATGCACTTGTCGATGC
TCCCCCCAACCTCTGTCCAATTCATGTACGTAAAAAGAGAAGGAGGAAGG
GAGGGAGGGAAGAAGATGTCAACCGGAGTGTCTCCGGTTGATTGTCACGC
ACAATGAAAGTATAATGTTGCCTCCCTCCATCCCTCCCTCCATCCCTCCC
TCCATCCCTCCCCCTAGATCTGGATTGAGGGGTCCTTCGTCTTCCGTCGC
GAGCAGAGCTTCCTTAAGCCCGGCCTCGATTTTTATGCTTCTGGTGATTT
CCGCTATGGCTCGCCAATGGAGGTAAGCAAACCTTCCCACCCTCCCTTCC
CCCCCCCCCTTCCTCCCAATCGTGTCCGCCTCGTCGAGCCCGTCACTCTG
ACACCTGCGTCTTCCTATCAATGACATGCACTTCCGGACATTATCTCAAC
CCTCCTCCCCCTTTTTCCCCCCCTCCCTCCCTCTCTCTCTCTCCCTCCCT
TCTTTTTCTCCTTTCCCTCCCTTCCTCCCCTCTTTTTCTCAGGCGGGCAC
CGCAGCTATGGAAGCTATCACCGCTATTTTCGATGGGCCCATGTGCTTCG
CTATTGCCTATGCCGTCAC
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Coding sequence (CDS) from alignment at scaffold_42:153604..155122+

>mRNA_10044 ID=mRNA_10044|Name=jgi.p|Nanoce1779_2|608725|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_42:153604..155122+ (Nannochloropsis oceanica)
ATGCACTTGAACCCAAAATATAGCAAGACCATGGAGAGCATCAAGCAATA
TGCCTCTGCGGCCTACGAATCCGTCGCTGAGCTAACCAACAACTACGCTG
GCGGTATGGCTGCGCCAAAGGCGCCAGTAGTCATGACGCTGATGGATTGG
ATGAAAGTCTTGCTGGGCCTAGGTGTGAGCGTTTCCCTCGTCTTCGGCGT
GCTATTTTGGACAACGAAAAAGGACAAGAGCCTGCAAACGCATCTCCTTA
CACCCGTCAACTTTTGGTTCGTGCTTTCGGGGGTCATTCATGTAAGTTAG
ATGCACTTGAACCCAAAATATAGCAAGACCATGGAGAGCATCAAGCAATA
TGCCTCTGCGGCCTACGAATCCGTCGCTGAGCTAACCAACAACTACGCTG
GCGGTATGGCTGCGCCAAAGGCGCCAGTAGTCATGACGCTGATGGATTGG
ATGAAAGTCTTGCTGGGCCTAGGTGTGAGCGTTTCCCTCGTCTTCGGCGT
GCTATTTTGGACAACGAAAAAGGACAAGAGCCTGCAAACGCATCTCCTTA
CACCCGTCAACTTTTGGTTCGTGCTTTCGGGGGTCATTCATGTAAGTTAG
ATGCACTTGAACCCAAAATATAGCAAGACCATGGAGAGCATCAAGCAATA
TGCCTCTGCGGCCTACGAATCCGTCGCTGAGCTAACCAACAACTACGCTG
GCGGTATGGCTGCGCCAAAGGCGCCAGTAGTCATGACGCTGATGGATTGG
ATGAAAGTCTTGCTGGGCCTAGGTGTGAGCGTTTCCCTCGTCTTCGGCGT
GCTATTTTGGACAACGAAAAAGGACAAGAGCCTGCAAACGCATCTCCTTA
CACCCGTCAACTTTTGGTTCGTGCTTTCGGGGGTCATTCATGTAAGTTAG
ATGCACTTGAACCCAAAATATAGCAAGACCATGGAGAGCATCAAGCAATA
TGCCTCTGCGGCCTACGAATCCGTCGCTGAGCTAACCAACAACTACGCTG
GCGGTATGGCTGCGCCAAAGGCGCCAGTAGTCATGACGCTGATGGATTGG
ATGAAAGTCTTGCTGGGCCTAGGTGTGAGCGTTTCCCTCGTCTTCGGCGT
GCTATTTTGGACAACGAAAAAGGACAAGAGCCTGCAAACGCATCTCCTTA
CACCCGTCAACTTTTGGTTCGTGCTTTCGGGGGTCATTCATGTAAGTTAG
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Synonyms
Publications