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Properties
| Property Name | Value |
|---|
| TranscriptId | 608804 |
| Track | FilteredModels2 |
| ProteinId | 608718 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_42 | supercontig | scaffold_42:149267..151880 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10043 ID=mRNA_10043|Name=jgi.p|Nanoce1779_2|608718|organism=Nannochloropsis oceanica|type=mRNA|length=2500bp
AGACCAGGTTCTGCAGGGTCAAGCAGCTCAGTGACACGGGGGGACGCAGC
GGAGTTGCAGGCTGGTTGGCTCGAAGTTCCACGTGATTTCGCGTTGCCTC
TGCACAAAGAGGGTTACTACGAGCCGCCATGGACCCTGATGCGACACTCA
CAGATCAGGGCGACCAACGAAAGACCCCGTCATGTGTCGTTGGCCTGGAT
AATCTTTCTCTCGACAGAGAGGAGATTTGCGAGGTGGAAGCGCTCAAGGC
CAAGACGAGCAGTGTCCACTCAACGACGGCTCCCATTGGGCTAGATAGTG
GCATCTGGTCGGTCCAAAACTCTTCTGAGTTCTGTTCACTGCCCGCCTCT
TTTGCTTCGTCGAATCTCAATCATAACGCGGCTAACTTTCATCCGGCCGC
TTCATCATTTGGCGCCTCGCTTCACCTTCCCCTCACCGTCGCCGAGACCT
CCTGTAGCACTTTCGGTAGTTCCGACCATCCACACATAAGCAACAAGGCA
TATAGCGACCAAAATTATACCCACGCAAACCTCCCCATATTTTCGCTGTC
CAGCTATCTGGAGAGTAGTTTTGCGTCTCCGATATCCGATGACATGCTCT
ACGTCGCTTGTAATAACATCAAGCTCCCTTCCGTACTTCCGAGTGGCACA
ACCAGGAGGCGCAAACCCACTACCACCACTACACGCATCCTTCTGGCCGC
GCATTGCGCCGGCTGTATCATTGGACATGGTGGAAATGTCATCAAGAGTA
TTCGTGACATCTCGGGTGCCTATGTGACCATACTTGACCGTGGAAGCGAG
AATCGGAACAGCTCGTACCGTCTGGTCACGCTCGTCGGCCCCTTACAGGC
CGTGGGGACAGCCATACAGATGATTGGCCTTCAGGCAGACCTCTTTGATA
ATGATTTGTCTGTGGATCAAAGTGGATTAACTCAGGTCATGAGCGGCGGG
AGCGGCCTCAACGATTATCAACACCCGTCAATGGCAACCCAGAGCTCCGT
TTCATCAGCCCCGTCTTATGTGTCTCACCCCCTGTACAGCCGTGGGACTA
GCCACGAGAGGGAAGCTGGAATGGTCAACATGTTGGGTCATCCAGGGAGC
ATAGGCATGGGCATTCATATGATTGTTGACAGTGTGATGCTGGGCAAGCT
GACCGGTAAGTATTGGTGGAGGGTCAACGAGATACAATGGCAGACGGGAG
TGCGCCGGATCCAAGTCTTGAGTACAAGCGAAAGTAAGCAAGAAGGCAGC
ATCCGGAACGAGAGGATAGTGGTGATCTTGGGAACAGCGGAGCAGTGTTT
GAGGGCACATCGAGAGATCACCTTGATTCTGGAGGCGGATCCCCTGAGTC
TCGAGCGCAGGGAGGAACAGCGAGGCCTAGGAGAGCGAGGGAGACAGAAC
GGTCCATGTGACAACAACCTTACCAGCTTAAAAGTTGATTCAACACCAAT
GAAGAGCCCCTCATCGGTTCAGTGCCTATCATTGCTGGAGCGAGAAGAGA
AGGAAGAATATGACAACTCGCGAGACAGAGCAGGCTGTGAATGGCACTGG
GATCCCAACACAAATGCCGCTGGTGAGAAGCAGGAGAAGGACGAGGGCAA
CGAGGAAGATCAGGGAAACGATGAAGTGAGCAAAATTTCCTCAAGTTTCA
TTGCTCCCAAGGCCGAGGTCACCATGGCGGCAAAATCTCTGAGCGTGGGG
GCTACTGGGGCAGGGAATGTTTCAAGGACCACAAGCTGTGAGTCTCAGGC
ATTTCCGGCCCCTGCGATGTCCGTGAAACTTCTTCCCTCCACCCTTTCCG
AAAAGCTAACGACAGATAAGGCCCGTGCCATAGCCACAAATCCCCTTTCT
CTCCCCTCTACGGTCTTTTCGCCCCTGCCTCTCCAGCCTTCGTCCTCGTC
GTCTTCGGCAACATCGTCGCTTTCCTCCCCGGTGCCATCGGTAGACGAGT
GTGGGAACACTTCTGTCCAGAGCGTGGTCAACGCAGATGCGAAAAAGAAC
TTTCGGGAATTTTCTGCACAGTTCGTTGTGTACATCTCTAACCAAAACAT
CGGGAGGTTGATTGGTAAAGGAGGCAGCACGATTCGGCTGCTGCGTCATG
AGACAAAGTGTCAGATTGAGGTTGAAAATTACCATCACTTCATGGACATG
CGAGAGGTGCGAATCAGAGGGACTCTTCAGCAGGTCCACATGGCTGTTGG
CATGCTCGGGCACCAACTGTTTGGTCGGAAAGATGGAGTGTGTTAACTGA
TGTTATTGTAGTCCCTGTCGGTTAGCTAGTAGCGAACAGTAACATACATA
GGTACTTACACCTATAACACTAGTAAAGACTCATTGAATCGAATTTAGAT
TTCATATTTGCTTATCTGTAGGGGAAAGTGTGCGTAGCTCCTTTTGGAGA
CTTAGAAAGGCACGAATATGATGGTCAGCTATTGCCATAAGGAGATAGAT
TTGTCCGTAGGTTTAGTATGTATTTTAAAAGAAAATTTTGAATAAAAATA back to topprotein sequence of jgi.p|Nanoce1779_2|608718 >mRNA_10043-protein ID=mRNA_10043-protein|Name=jgi.p|Nanoce1779_2|608718|organism=Nannochloropsis oceanica|type=polypeptide|length=706bp
MDPDATLTDQGDQRKTPSCVVGLDNLSLDREEICEVEALKAKTSSVHSTT
APIGLDSGIWSVQNSSEFCSLPASFASSNLNHNAANFHPAASSFGASLHL
PLTVAETSCSTFGSSDHPHISNKAYSDQNYTHANLPIFSLSSYLESSFAS
PISDDMLYVACNNIKLPSVLPSGTTRRRKPTTTTTRILLAAHCAGCIIGH
GGNVIKSIRDISGAYVTILDRGSENRNSSYRLVTLVGPLQAVGTAIQMIG
LQADLFDNDLSVDQSGLTQVMSGGSGLNDYQHPSMATQSSVSSAPSYVSH
PLYSRGTSHEREAGMVNMLGHPGSIGMGIHMIVDSVMLGKLTGKYWWRVN
EIQWQTGVRRIQVLSTSESKQEGSIRNERIVVILGTAEQCLRAHREITLI
LEADPLSLERREEQRGLGERGRQNGPCDNNLTSLKVDSTPMKSPSSVQCL
SLLEREEKEEYDNSRDRAGCEWHWDPNTNAAGEKQEKDEGNEEDQGNDEV
SKISSSFIAPKAEVTMAAKSLSVGATGAGNVSRTTSCESQAFPAPAMSVK
LLPSTLSEKLTTDKARAIATNPLSLPSTVFSPLPLQPSSSSSSATSSLSS
PVPSVDECGNTSVQSVVNADAKKNFREFSAQFVVYISNQNIGRLIGKGGS
TIRLLRHETKCQIEVENYHHFMDMREVRIRGTLQQVHMAVGMLGHQLFGR
KDGVC* back to topmRNA from alignment at scaffold_42:149267..151880- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10043 ID=mRNA_10043|Name=jgi.p|Nanoce1779_2|608718|organism=Nannochloropsis oceanica|type=mRNA|length=2614bp|location=Sequence derived from alignment at scaffold_42:149267..151880- (Nannochloropsis oceanica)
AGACCAGGTTCTGCAGGGTCAAGCAGCTCAGTGACACGGGGGGACGCAGC
GGAGTTGCAGGCTGGTTGGCTCGAAGTTCCACGTGATTTCGCGTTGCCTC
TGCACAAAGAGGGTTACTACGAGCCGCCATGGACCCTGATGCGACACTCA
CAGATCAGGGCGACCAACGAAAGGTAAGCCGATGAAAGACATTCGAGAGT
CAAGAAAAAATCCTGGCCAGTGTGTCGTTGGAACCCGATGCAGCGATATC
AGGATATTGAACCTAAATCTCATTATAAATCGCACAGACCCCGTCATGTG
TCGTTGGCCTGGATAATCTTTCTCTCGACAGAGAGGAGATTTGCGAGGTG
GAAGCGCTCAAGGCCAAGACGAGCAGTGTCCACTCAACGACGGCTCCCAT
TGGGCTAGATAGTGGCATCTGGTCGGTCCAAAACTCTTCTGAGTTCTGTT
CACTGCCCGCCTCTTTTGCTTCGTCGAATCTCAATCATAACGCGGCTAAC
TTTCATCCGGCCGCTTCATCATTTGGCGCCTCGCTTCACCTTCCCCTCAC
CGTCGCCGAGACCTCCTGTAGCACTTTCGGTAGTTCCGACCATCCACACA
TAAGCAACAAGGCATATAGCGACCAAAATTATACCCACGCAAACCTCCCC
ATATTTTCGCTGTCCAGCTATCTGGAGAGTAGTTTTGCGTCTCCGATATC
CGATGACATGCTCTACGTCGCTTGTAATAACATCAAGCTCCCTTCCGTAC
TTCCGAGTGGCACAACCAGGAGGCGCAAACCCACTACCACCACTACACGC
ATCCTTCTGGCCGCGCATTGCGCCGGCTGTATCATTGGACATGGTGGAAA
TGTCATCAAGAGTATTCGTGACATCTCGGGTGCCTATGTGACCATACTTG
ACCGTGGAAGCGAGAATCGGAACAGCTCGTACCGTCTGGTCACGCTCGTC
GGCCCCTTACAGGCCGTGGGGACAGCCATACAGATGATTGGCCTTCAGGC
AGACCTCTTTGATAATGATTTGTCTGTGGATCAAAGTGGATTAACTCAGG
TCATGAGCGGCGGGAGCGGCCTCAACGATTATCAACACCCGTCAATGGCA
ACCCAGAGCTCCGTTTCATCAGCCCCGTCTTATGTGTCTCACCCCCTGTA
CAGCCGTGGGACTAGCCACGAGAGGGAAGCTGGAATGGTCAACATGTTGG
GTCATCCAGGGAGCATAGGCATGGGCATTCATATGATTGTTGACAGTGTG
ATGCTGGGCAAGCTGACCGGTAAGTATTGGTGGAGGGTCAACGAGATACA
ATGGCAGACGGGAGTGCGCCGGATCCAAGTCTTGAGTACAAGCGAAAGTA
AGCAAGAAGGCAGCATCCGGAACGAGAGGATAGTGGTGATCTTGGGAACA
GCGGAGCAGTGTTTGAGGGCACATCGAGAGATCACCTTGATTCTGGAGGC
GGATCCCCTGAGTCTCGAGCGCAGGGAGGAACAGCGAGGCCTAGGAGAGC
GAGGGAGACAGAACGGTCCATGTGACAACAACCTTACCAGCTTAAAAGTT
GATTCAACACCAATGAAGAGCCCCTCATCGGTTCAGTGCCTATCATTGCT
GGAGCGAGAAGAGAAGGAAGAATATGACAACTCGCGAGACAGAGCAGGCT
GTGAATGGCACTGGGATCCCAACACAAATGCCGCTGGTGAGAAGCAGGAG
AAGGACGAGGGCAACGAGGAAGATCAGGGAAACGATGAAGTGAGCAAAAT
TTCCTCAAGTTTCATTGCTCCCAAGGCCGAGGTCACCATGGCGGCAAAAT
CTCTGAGCGTGGGGGCTACTGGGGCAGGGAATGTTTCAAGGACCACAAGC
TGTGAGTCTCAGGCATTTCCGGCCCCTGCGATGTCCGTGAAACTTCTTCC
CTCCACCCTTTCCGAAAAGCTAACGACAGATAAGGCCCGTGCCATAGCCA
CAAATCCCCTTTCTCTCCCCTCTACGGTCTTTTCGCCCCTGCCTCTCCAG
CCTTCGTCCTCGTCGTCTTCGGCAACATCGTCGCTTTCCTCCCCGGTGCC
ATCGGTAGACGAGTGTGGGAACACTTCTGTCCAGAGCGTGGTCAACGCAG
ATGCGAAAAAGAACTTTCGGGAATTTTCTGCACAGTTCGTTGTGTACATC
TCTAACCAAAACATCGGGAGGTTGATTGGTAAAGGAGGCAGCACGATTCG
GCTGCTGCGTCATGAGACAAAGTGTCAGATTGAGGTTGAAAATTACCATC
ACTTCATGGACATGCGAGAGGTGCGAATCAGAGGGACTCTTCAGCAGGTC
CACATGGCTGTTGGCATGCTCGGGCACCAACTGTTTGGTCGGAAAGATGG
AGTGTGTTAACTGATGTTATTGTAGTCCCTGTCGGTTAGCTAGTAGCGAA
CAGTAACATACATAGGTACTTACACCTATAACACTAGTAAAGACTCATTG
AATCGAATTTAGATTTCATATTTGCTTATCTGTAGGGGAAAGTGTGCGTA
GCTCCTTTTGGAGACTTAGAAAGGCACGAATATGATGGTCAGCTATTGCC
ATAAGGAGATAGATTTGTCCGTAGGTTTAGTATGTATTTTAAAAGAAAAT
TTTGAATAAAAATA back to topCoding sequence (CDS) from alignment at scaffold_42:149267..151880- >mRNA_10043 ID=mRNA_10043|Name=jgi.p|Nanoce1779_2|608718|organism=Nannochloropsis oceanica|type=CDS|length=4236bp|location=Sequence derived from alignment at scaffold_42:149267..151880- (Nannochloropsis oceanica)
ACCCCGTCATGTGTCGTTGGCCTGGATAATCTTTCTCTCGACAGAGAGGA
GATTTGCGAGGTGGAAGCGCTCAAGGCCAAGACGAGCAGTGTCCACTCAA
CGACGGCTCCCATTGGGCTAGATAGTGGCATCTGGTCGGTCCAAAACTCT
TCTGAGTTCTGTTCACTGCCCGCCTCTTTTGCTTCGTCGAATCTCAATCA
TAACGCGGCTAACTTTCATCCGGCCGCTTCATCATTTGGCGCCTCGCTTC
ACCTTCCCCTCACCGTCGCCGAGACCTCCTGTAGCACTTTCGGTAGTTCC
GACCATCCACACATAAGCAACAAGGCATATAGCGACCAAAATTATACCCA
CGCAAACCTCCCCATATTTTCGCTGTCCAGCTATCTGGAGAGTAGTTTTG
CGTCTCCGATATCCGATGACATGCTCTACGTCGCTTGTAATAACATCAAG
CTCCCTTCCGTACTTCCGAGTGGCACAACCAGGAGGCGCAAACCCACTAC
CACCACTACACGCATCCTTCTGGCCGCGCATTGCGCCGGCTGTATCATTG
GACATGGTGGAAATGTCATCAAGAGTATTCGTGACATCTCGGGTGCCTAT
GTGACCATACTTGACCGTGGAAGCGAGAATCGGAACAGCTCGTACCGTCT
GGTCACGCTCGTCGGCCCCTTACAGGCCGTGGGGACAGCCATACAGATGA
TTGGCCTTCAGGCAGACCTCTTTGATAATGATTTGTCTGTGGATCAAAGT
GGATTAACTCAGGTCATGAGCGGCGGGAGCGGCCTCAACGATTATCAACA
CCCGTCAATGGCAACCCAGAGCTCCGTTTCATCAGCCCCGTCTTATGTGT
CTCACCCCCTGTACAGCCGTGGGACTAGCCACGAGAGGGAAGCTGGAATG
GTCAACATGTTGGGTCATCCAGGGAGCATAGGCATGGGCATTCATATGAT
TGTTGACAGTGTGATGCTGGGCAAGCTGACCGGTAAGTATTGGTGGAGGG
TCAACGAGATACAATGGCAGACGGGAGTGCGCCGGATCCAAGTCTTGAGT
ACAAGCGAAAGTAAGCAAGAAGGCAGCATCCGGAACGAGAGGATAGTGGT
GATCTTGGGAACAGCGGAGCAGTGTTTGAGGGCACATCGAGAGATCACCT
TGATTCTGGAGGCGGATCCCCTGAGTCTCGAGCGCAGGGAGGAACAGCGA
GGCCTAGGAGAGCGAGGGAGACAGAACGGTCCATGTGACAACAACCTTAC
CAGCTTAAAAGTTGATTCAACACCAATGAAGAGCCCCTCATCGGTTCAGT
GCCTATCATTGCTGGAGCGAGAAGAGAAGGAAGAATATGACAACTCGCGA
GACAGAGCAGGCTGTGAATGGCACTGGGATCCCAACACAAATGCCGCTGG
TGAGAAGCAGGAGAAGGACGAGGGCAACGAGGAAGATCAGGGAAACGATG
AAGTGAGCAAAATTTCCTCAAGTTTCATTGCTCCCAAGGCCGAGGTCACC
ATGGCGGCAAAATCTCTGAGCGTGGGGGCTACTGGGGCAGGGAATGTTTC
AAGGACCACAAGCTGTGAGTCTCAGGCATTTCCGGCCCCTGCGATGTCCG
TGAAACTTCTTCCCTCCACCCTTTCCGAAAAGCTAACGACAGATAAGGCC
CGTGCCATAGCCACAAATCCCCTTTCTCTCCCCTCTACGGTCTTTTCGCC
CCTGCCTCTCCAGCCTTCGTCCTCGTCGTCTTCGGCAACATCGTCGCTTT
CCTCCCCGGTGCCATCGGTAGACGAGTGTGGGAACACTTCTGTCCAGAGC
GTGGTCAACGCAGATGCGAAAAAGAACTTTCGGGAATTTTCTGCACAGTT
CGTTGTGTACATCTCTAACCAAAACATCGGGAGGTTGATTGGTAAAGGAG
GCAGCACGATTCGGCTGCTGCGTCATGAGACAAAGTGTCAGATTGAGGTT
GAAAATTACCATCACTTCATGGACATGCGAGAGGTGCGAATCAGAGGGAC
TCTTCAGCAGGTCCACATGGCTGTTGGCATGCTCGGGCACCAACTGTTTG
GTCGGAAAGATGGAGTGTGTTAAATGGACCCTGATGCGACACTCACAGAT
CAGGGCGACCAACGAAAGACCCCGTCATGTGTCGTTGGCCTGGATAATCT
TTCTCTCGACAGAGAGGAGATTTGCGAGGTGGAAGCGCTCAAGGCCAAGA
CGAGCAGTGTCCACTCAACGACGGCTCCCATTGGGCTAGATAGTGGCATC
TGGTCGGTCCAAAACTCTTCTGAGTTCTGTTCACTGCCCGCCTCTTTTGC
TTCGTCGAATCTCAATCATAACGCGGCTAACTTTCATCCGGCCGCTTCAT
CATTTGGCGCCTCGCTTCACCTTCCCCTCACCGTCGCCGAGACCTCCTGT
AGCACTTTCGGTAGTTCCGACCATCCACACATAAGCAACAAGGCATATAG
CGACCAAAATTATACCCACGCAAACCTCCCCATATTTTCGCTGTCCAGCT
ATCTGGAGAGTAGTTTTGCGTCTCCGATATCCGATGACATGCTCTACGTC
GCTTGTAATAACATCAAGCTCCCTTCCGTACTTCCGAGTGGCACAACCAG
GAGGCGCAAACCCACTACCACCACTACACGCATCCTTCTGGCCGCGCATT
GCGCCGGCTGTATCATTGGACATGGTGGAAATGTCATCAAGAGTATTCGT
GACATCTCGGGTGCCTATGTGACCATACTTGACCGTGGAAGCGAGAATCG
GAACAGCTCGTACCGTCTGGTCACGCTCGTCGGCCCCTTACAGGCCGTGG
GGACAGCCATACAGATGATTGGCCTTCAGGCAGACCTCTTTGATAATGAT
TTGTCTGTGGATCAAAGTGGATTAACTCAGGTCATGAGCGGCGGGAGCGG
CCTCAACGATTATCAACACCCGTCAATGGCAACCCAGAGCTCCGTTTCAT
CAGCCCCGTCTTATGTGTCTCACCCCCTGTACAGCCGTGGGACTAGCCAC
GAGAGGGAAGCTGGAATGGTCAACATGTTGGGTCATCCAGGGAGCATAGG
CATGGGCATTCATATGATTGTTGACAGTGTGATGCTGGGCAAGCTGACCG
GTAAGTATTGGTGGAGGGTCAACGAGATACAATGGCAGACGGGAGTGCGC
CGGATCCAAGTCTTGAGTACAAGCGAAAGTAAGCAAGAAGGCAGCATCCG
GAACGAGAGGATAGTGGTGATCTTGGGAACAGCGGAGCAGTGTTTGAGGG
CACATCGAGAGATCACCTTGATTCTGGAGGCGGATCCCCTGAGTCTCGAG
CGCAGGGAGGAACAGCGAGGCCTAGGAGAGCGAGGGAGACAGAACGGTCC
ATGTGACAACAACCTTACCAGCTTAAAAGTTGATTCAACACCAATGAAGA
GCCCCTCATCGGTTCAGTGCCTATCATTGCTGGAGCGAGAAGAGAAGGAA
GAATATGACAACTCGCGAGACAGAGCAGGCTGTGAATGGCACTGGGATCC
CAACACAAATGCCGCTGGTGAGAAGCAGGAGAAGGACGAGGGCAACGAGG
AAGATCAGGGAAACGATGAAGTGAGCAAAATTTCCTCAAGTTTCATTGCT
CCCAAGGCCGAGGTCACCATGGCGGCAAAATCTCTGAGCGTGGGGGCTAC
TGGGGCAGGGAATGTTTCAAGGACCACAAGCTGTGAGTCTCAGGCATTTC
CGGCCCCTGCGATGTCCGTGAAACTTCTTCCCTCCACCCTTTCCGAAAAG
CTAACGACAGATAAGGCCCGTGCCATAGCCACAAATCCCCTTTCTCTCCC
CTCTACGGTCTTTTCGCCCCTGCCTCTCCAGCCTTCGTCCTCGTCGTCTT
CGGCAACATCGTCGCTTTCCTCCCCGGTGCCATCGGTAGACGAGTGTGGG
AACACTTCTGTCCAGAGCGTGGTCAACGCAGATGCGAAAAAGAACTTTCG
GGAATTTTCTGCACAGTTCGTTGTGTACATCTCTAACCAAAACATCGGGA
GGTTGATTGGTAAAGGAGGCAGCACGATTCGGCTGCTGCGTCATGAGACA
AAGTGTCAGATTGAGGTTGAAAATTACCATCACTTCATGGACATGCGAGA
GGTGCGAATCAGAGGGACTCTTCAGCAGGTCCACATGGCTGTTGGCATGC
TCGGGCACCAACTGTTTGGTCGGAAAGATGGAGTGTGTTAAATGGACCCT
GATGCGACACTCACAGATCAGGGCGACCAACGAAAG back to top
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