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Properties
| Property Name | Value |
|---|
| TranscriptId | 608782 |
| Track | FilteredModels2 |
| ProteinId | 608696 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_42 | supercontig | scaffold_42:135099..137819 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10040 ID=mRNA_10040|Name=jgi.p|Nanoce1779_2|608696|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp
ACAGAGTGTACGCTATTCATCAAGGAACGAAGCTGATTATGCGCCTTTCC
TGAAGCAACATTTCGTTTTCCTCGATTCGATTCCAATGTTTGTCTCCTCG
TCTCCCCTTTCCCTCCTCACGGGCGGCACCGCTTCACTCGCAGCCATCGC
GGCCCTTGCTGCGTATTTTTTCTACTTCTCGACTAATCTTCAATGGGAAG
CATTATGTAGGTGGCCAGTGGCGCGGATGATCTGCGCTGGGGTGGACATG
GGGGCAAGACACAAGGCCAAGCAATATTTTCGTGTGCGACGTCGCACGTG
GATCAAGCCTGCTGCGACCACTGCTCATGCTGCTGACGCTAGTGCTGCTG
AAGCAGATAAGAGTAAAAAGGATAATGTGGAAATTGGAGAGGTGGGGAAG
GGTCTACAGGCTGATCGACACAACCTGTCGATACTGGACAAGATGCTCTG
TCCCATCACAATCATTAACATGCACTACTTCTACGAGGCAACGCTCGATT
CCAGTAAACTTCAAACCTCCCTCTGTACCCTCCTCTCCCTCCACCCCTTC
CTCGCGGGCTCCCTCCGCGGATTTCTCAAGACTGCCTGTGTCCACTGCGA
GGGGAAAGGCGTCGAATTCACCGAAGCCGAGAGCGACTGGTCCATTGCGG
ACATTCACTACGCTTCGCCTTCCCTTGGCCGACTTTCCCAGTACGAGCCT
TGTGGCTTTGGAGCCGGGACAGGTGCCCTCCCTCCCTCCCTCCCTCCCTC
CCTTCCTGTTTTCCGTCCTGGGATGTCGTCCGTGGCATTGCCTCCTACAG
GGGCGCTCCTGTCATGCGGGTGCGGCTCACGCACCTGCATGGAGGAGGGA
GTGCCTTATCTATCTCTGTTGCTCACACTGTACTGGACGCTAAGAGTGTG
ATGAAGGTGGTCGAGCTCTGGGCCCGGCATACCCGGGGCGAGGACGAAGG
AGGGAAGGAGGGCGGGACGGAGGAGCCTCGGAGCGTGGAGGAAGTGTACC
TAAAGCCGCCCCACCTGGACAACATACTCTCGTCTGACGAGGTTATTTCC
ATCCTACCCCCTCCTCGTCTGTGGTACCGCGTACTAGCCTACGATGCATG
GCATGGCTTAAGGACGGTGTTATACACCATCTATCTGTTTGCGTGGGTGG
GGCTGGAGACACAGACTTTTTTTTTCAGTGAGGAGGACGTGAGGGGGAGA
AAGGAGGGGGTGATGGCGGAGTTGCACCGGAGAAGGGAAGAGGACGAGGA
AAAAGAAGAAAAGGAGGAGGAGGAGAAAGAGGAGGAGAAGGAGAAGAAGA
ATGAGGAGGAAGGAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGA
AGGGAGAGGGCAGGGTCGACGTCCATGAATCGGTTCAACCGGCGGACTTT
GAGGAGCAGCAGCAGCAG back to topprotein sequence of jgi.p|Nanoce1779_2|608696 >mRNA_10040-protein ID=mRNA_10040-protein|Name=jgi.p|Nanoce1779_2|608696|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MFVSSSPLSLLTGGTASLAAIAALAAYFFYFSTNLQWEALCRWPVARMIC
AGVDMGARHKAKQYFRVRRRTWIKPAATTAHAADASAAEADKSKKDNVEI
GEVGKGLQADRHNLSILDKMLCPITIINMHYFYEATLDSSKLQTSLCTLL
SLHPFLAGSLRGFLKTACVHCEGKGVEFTEAESDWSIADIHYASPSLGRL
SQYEPCGFGAGTGALPPSLPPSLPVFRPGMSSVALPPTGALLSCGCGSRT
CMEEGVPYLSLLLTLYWTLRV* back to topmRNA from alignment at scaffold_42:135099..137819+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10040 ID=mRNA_10040|Name=jgi.p|Nanoce1779_2|608696|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp|location=Sequence derived from alignment at scaffold_42:135099..137819+ (Nannochloropsis oceanica)
ACAGAGTGTACGCTATTCATCAAGGAACGAAGCTGATTATGCGCCTTTCC
TGAAGCAACATTTCGTTTTCCTCGATTCGATTCCAATGTTTGTCTCCTCG
TCTCCCCTTTCCCTCCTCACGGGCGGCACCGCTTCACTCGCAGCCATCGC
GGCCCTTGCTGCGTATTTTTTCTACTTCTCGACTAATCTTCAATGGGAAG
CATTATGTAGGTGGCCAGTGGCGCGGATGATCTGCGCTGGGGTGGACATG
GGGGCAAGACACAAGGCCAAGCAATATTTTCGTGTGCGACGTCGCACGTG
GATCAAGCCTGCTGCGACCACTGCTCATGCTGCTGACGCTAGTGCTGCTG
AAGCAGATAAGAGTAAAAAGGATAATGTGGAAATTGGAGAGGTGGGGAAG
GTACGACTGTATTGAGGGAGAAGAAAGACTGCTTTTGTTATCTGGATGAC
GGAGGGGGAGGACGAGGAGGAGGAAAAGAAGGAGGAGGAGGATGAAGAAA
GGGGAAGGGGGAAGGGGCCGATAAGTGGGTGACTCACATTTCATATGTAG
ATAGAGATGCCTGCGCATGTTTCTCCTTTCCTCACTGACGGCTTCTTTCC
TTTCTTTTCTTCCCTCCCGCGCCAACCCTTTGAAGGGTCTACAGGCTGAT
CGACACAACCTGTCGATACTGGACAAGATGCTCTGTCCCATCACAATCAT
TAACATGCACTACTTCTACGAGGTATCACCACACCTTTCTTCCTTCCCTC
CCTCCCTTCTTCCCTCCCTCCATCGTCTTATCCCCCCAAAAAGAATGACA
GACATAGCCGACTTCAGCCCTCACACCCTCCCTCCCTCCCTCCTTCCCTC
CTTCCCTCCTTCTCTTCCTTCTTCCTCTTCCTCCTCACAGGCAACGCTCG
ATTCCAGTAAACTTCAAACCTCCCTCTGTACCCTCCTCTCCCTCCACCCC
TTCCTCGCGGGCTCCCTCCGCGGATTTCTCAAGACTGCCTGTGTCCACTG
CGAGGGGAAAGGCGTCGAATTCACCGAAGCCGAGAGCGACTGGTACGTAG
CCGTTCCTCCCTCCCTCCCTCCCTCCTTTCTTTCTCTTCCTTGCTATAAA
AGGGTAGAGGGAGAGCTCACTAAAGCCGAGAGTGCTGACCAGGTGAAAAG
GGGAGAGAAGGAGTTGGGCAAGCAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGAGGGAGGGCACCTGTCCCGGCACCAAAACAACAA
AACTCATACTGGGAAAGTCAGTCAAGGGAAAGCGAAGGGTAGTAAATGTC
CGCGATGGACCTGTGAGGGAGGGAGGAAGAGAAGGACGGCGGGGGGGAGG
GAGGGTATAAATGCAGTGCAAGTACTGTGGCATCCGCTGAACAGGCCGAG
ACAAGACAGTCCCATACATGTACTTATGATTTCACCTTCCCTCCCTCTCT
TCCTCCCTCCTTCCCTTCCTCCCTCCCTCCTCTTCCTCACAGGTCCATTG
CGGACATTCACTACGCTTCGCCTTCCCTTGGCCGACTTTCCCAGTACGAG
CCTTGTGGCTTTGGAGCCGGGACAGGTGCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTCCTGTTTTCCGTGTGAGTTTTCCGGCGTGATTCGTTACACCCA
CATTTCACTCCCGCCGTTCCTTTCTACCCCCCTACCGTCCCTCCCTTCCT
CCCCCCTTCCCCTGCAGCCTGGGATGTCGTCCGTGGCATTGCCTCCTACA
GGGGCGCTCCTGTCATGCGGGTGCGGCTCACGCACCTGCATGGAGGAGGG
AGTGCCTTATCTATCTCTGTTGCTCACACTGTACTGGACGCTAAGAGTGT
GATGAAGGTAGGTGGACAGGTTTCTTTCCTCCCTCACGTCCTCCCTCACG
TCCTCCCTCGTGTCTCTCCATCCTCTCAGTCTCTCCCCTTGCCAAGAGAG
AGGTGCAAGTACCTTCCTTCCCTTCTCCCTTCCCCCCTTTCGTCCTTCGC
CCCCCCCCCCCCCCTCATTCCCTCTCTTCTCCTCAGATGTCAGAGATGTC
CCTCTCCACTCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTTAGGTGGTC
GAGCTCTGGGCCCGGCATACCCGGGGCGAGGACGAAGGAGGGAAGGAGGG
CGGGACGGAGGAGCCTCGGAGCGTGGAGGAAGTGTACCTAAAGCCGCCCC
ACCTGGACAACATACTCTCGTCTGACGAGGTGCGTAACCCCCCCCATCCA
CCTCCTCCTCCTCCTCCTCCTCCTCATTGTGTAGTCCATCTATGTCTCGT
CCCCCCTCATCCCCCTTCCCTCCCACCCTCCTCCCCTTCCACAGGTTATT
TCCATCCTACCCCCTCCTCGTCTGTGGTACCGCGTACTAGCCTACGATGC
ATGGCATGGCTTAAGGACGGTGTTATACACCATCTATCTGTTTGCGTGGG
TGGGGCTGGAGACACAGACTTTTTTTTTCAGTGAGGAGGACGTGAGGGGG
AGAAAGGAGGGGGTGATGGCGGAGTTGCACCGGAGAAGGGAAGAGGACGA
GGAAAAAGAAGAAAAGGAGGAGGAGGAGAAAGAGGAGGAGAAGGAGAAGA
AGAATGAGGAGGAAGGAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAA
GGAAGGGAGAGGGCAGGGTCGACGTCCATGAATCGGTTCAACCGGCGGAC
TTTGAGGAGCAGCAGCAGCAG back to topCoding sequence (CDS) from alignment at scaffold_42:135099..137819+ >mRNA_10040 ID=mRNA_10040|Name=jgi.p|Nanoce1779_2|608696|organism=Nannochloropsis oceanica|type=CDS|length=4080bp|location=Sequence derived from alignment at scaffold_42:135099..137819+ (Nannochloropsis oceanica)
ATGTTTGTCTCCTCGTCTCCCCTTTCCCTCCTCACGGGCGGCACCGCTTC
ACTCGCAGCCATCGCGGCCCTTGCTGCGTATTTTTTCTACTTCTCGACTA
ATCTTCAATGGGAAGCATTATGTAGGTGGCCAGTGGCGCGGATGATCTGC
GCTGGGGTGGACATGGGGGCAAGACACAAGGCCAAGCAATATTTTCGTGT
GCGACGTCGCACGTGGATCAAGCCTGCTGCGACCACTGCTCATGCTGCTG
ACGCTAGTGCTGCTGAAGCAGATAAGAGTAAAAAGGATAATGTGGAAATT
GGAGAGGTGGGGAAGGGTCTACAGGCTGATCGACACAACCTGTCGATACT
GGACAAGATGCTCTGTCCCATCACAATCATTAACATGCACTACTTCTACG
AGGCAACGCTCGATTCCAGTAAACTTCAAACCTCCCTCTGTACCCTCCTC
TCCCTCCACCCCTTCCTCGCGGGCTCCCTCCGCGGATTTCTCAAGACTGC
CTGTGTCCACTGCGAGGGGAAAGGCGTCGAATTCACCGAAGCCGAGAGCG
ACTGGTCCATTGCGGACATTCACTACGCTTCGCCTTCCCTTGGCCGACTT
TCCCAGTACGAGCCTTGTGGCTTTGGAGCCGGGACAGGTGCCCTCCCTCC
CTCCCTCCCTCCCTCCCTTCCTGTTTTCCGTCCTGGGATGTCGTCCGTGG
CATTGCCTCCTACAGGGGCGCTCCTGTCATGCGGGTGCGGCTCACGCACC
TGCATGGAGGAGGGAGTGCCTTATCTATCTCTGTTGCTCACACTGTACTG
GACGCTAAGAGTGTGAATGTTTGTCTCCTCGTCTCCCCTTTCCCTCCTCA
CGGGCGGCACCGCTTCACTCGCAGCCATCGCGGCCCTTGCTGCGTATTTT
TTCTACTTCTCGACTAATCTTCAATGGGAAGCATTATGTAGGTGGCCAGT
GGCGCGGATGATCTGCGCTGGGGTGGACATGGGGGCAAGACACAAGGCCA
AGCAATATTTTCGTGTGCGACGTCGCACGTGGATCAAGCCTGCTGCGACC
ACTGCTCATGCTGCTGACGCTAGTGCTGCTGAAGCAGATAAGAGTAAAAA
GGATAATGTGGAAATTGGAGAGGTGGGGAAGGGTCTACAGGCTGATCGAC
ACAACCTGTCGATACTGGACAAGATGCTCTGTCCCATCACAATCATTAAC
ATGCACTACTTCTACGAGGCAACGCTCGATTCCAGTAAACTTCAAACCTC
CCTCTGTACCCTCCTCTCCCTCCACCCCTTCCTCGCGGGCTCCCTCCGCG
GATTTCTCAAGACTGCCTGTGTCCACTGCGAGGGGAAAGGCGTCGAATTC
ACCGAAGCCGAGAGCGACTGGTCCATTGCGGACATTCACTACGCTTCGCC
TTCCCTTGGCCGACTTTCCCAGTACGAGCCTTGTGGCTTTGGAGCCGGGA
CAGGTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTGTTTTCCGTCCT
GGGATGTCGTCCGTGGCATTGCCTCCTACAGGGGCGCTCCTGTCATGCGG
GTGCGGCTCACGCACCTGCATGGAGGAGGGAGTGCCTTATCTATCTCTGT
TGCTCACACTGTACTGGACGCTAAGAGTGTGAATGTTTGTCTCCTCGTCT
CCCCTTTCCCTCCTCACGGGCGGCACCGCTTCACTCGCAGCCATCGCGGC
CCTTGCTGCGTATTTTTTCTACTTCTCGACTAATCTTCAATGGGAAGCAT
TATGTAGGTGGCCAGTGGCGCGGATGATCTGCGCTGGGGTGGACATGGGG
GCAAGACACAAGGCCAAGCAATATTTTCGTGTGCGACGTCGCACGTGGAT
CAAGCCTGCTGCGACCACTGCTCATGCTGCTGACGCTAGTGCTGCTGAAG
CAGATAAGAGTAAAAAGGATAATGTGGAAATTGGAGAGGTGGGGAAGGGT
CTACAGGCTGATCGACACAACCTGTCGATACTGGACAAGATGCTCTGTCC
CATCACAATCATTAACATGCACTACTTCTACGAGGCAACGCTCGATTCCA
GTAAACTTCAAACCTCCCTCTGTACCCTCCTCTCCCTCCACCCCTTCCTC
GCGGGCTCCCTCCGCGGATTTCTCAAGACTGCCTGTGTCCACTGCGAGGG
GAAAGGCGTCGAATTCACCGAAGCCGAGAGCGACTGGTCCATTGCGGACA
TTCACTACGCTTCGCCTTCCCTTGGCCGACTTTCCCAGTACGAGCCTTGT
GGCTTTGGAGCCGGGACAGGTGCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TCCTGTTTTCCGTCCTGGGATGTCGTCCGTGGCATTGCCTCCTACAGGGG
CGCTCCTGTCATGCGGGTGCGGCTCACGCACCTGCATGGAGGAGGGAGTG
CCTTATCTATCTCTGTTGCTCACACTGTACTGGACGCTAAGAGTGTGAAT
GTTTGTCTCCTCGTCTCCCCTTTCCCTCCTCACGGGCGGCACCGCTTCAC
TCGCAGCCATCGCGGCCCTTGCTGCGTATTTTTTCTACTTCTCGACTAAT
CTTCAATGGGAAGCATTATGTAGGTGGCCAGTGGCGCGGATGATCTGCGC
TGGGGTGGACATGGGGGCAAGACACAAGGCCAAGCAATATTTTCGTGTGC
GACGTCGCACGTGGATCAAGCCTGCTGCGACCACTGCTCATGCTGCTGAC
GCTAGTGCTGCTGAAGCAGATAAGAGTAAAAAGGATAATGTGGAAATTGG
AGAGGTGGGGAAGGGTCTACAGGCTGATCGACACAACCTGTCGATACTGG
ACAAGATGCTCTGTCCCATCACAATCATTAACATGCACTACTTCTACGAG
GCAACGCTCGATTCCAGTAAACTTCAAACCTCCCTCTGTACCCTCCTCTC
CCTCCACCCCTTCCTCGCGGGCTCCCTCCGCGGATTTCTCAAGACTGCCT
GTGTCCACTGCGAGGGGAAAGGCGTCGAATTCACCGAAGCCGAGAGCGAC
TGGTCCATTGCGGACATTCACTACGCTTCGCCTTCCCTTGGCCGACTTTC
CCAGTACGAGCCTTGTGGCTTTGGAGCCGGGACAGGTGCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTCCTGTTTTCCGTCCTGGGATGTCGTCCGTGGCA
TTGCCTCCTACAGGGGCGCTCCTGTCATGCGGGTGCGGCTCACGCACCTG
CATGGAGGAGGGAGTGCCTTATCTATCTCTGTTGCTCACACTGTACTGGA
CGCTAAGAGTGTGAATGTTTGTCTCCTCGTCTCCCCTTTCCCTCCTCACG
GGCGGCACCGCTTCACTCGCAGCCATCGCGGCCCTTGCTGCGTATTTTTT
CTACTTCTCGACTAATCTTCAATGGGAAGCATTATGTAGGTGGCCAGTGG
CGCGGATGATCTGCGCTGGGGTGGACATGGGGGCAAGACACAAGGCCAAG
CAATATTTTCGTGTGCGACGTCGCACGTGGATCAAGCCTGCTGCGACCAC
TGCTCATGCTGCTGACGCTAGTGCTGCTGAAGCAGATAAGAGTAAAAAGG
ATAATGTGGAAATTGGAGAGGTGGGGAAGGGTCTACAGGCTGATCGACAC
AACCTGTCGATACTGGACAAGATGCTCTGTCCCATCACAATCATTAACAT
GCACTACTTCTACGAGGCAACGCTCGATTCCAGTAAACTTCAAACCTCCC
TCTGTACCCTCCTCTCCCTCCACCCCTTCCTCGCGGGCTCCCTCCGCGGA
TTTCTCAAGACTGCCTGTGTCCACTGCGAGGGGAAAGGCGTCGAATTCAC
CGAAGCCGAGAGCGACTGGTCCATTGCGGACATTCACTACGCTTCGCCTT
CCCTTGGCCGACTTTCCCAGTACGAGCCTTGTGGCTTTGGAGCCGGGACA
GGTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTGTTTTCCGTCCTGG
GATGTCGTCCGTGGCATTGCCTCCTACAGGGGCGCTCCTGTCATGCGGGT
GCGGCTCACGCACCTGCATGGAGGAGGGAGTGCCTTATCTATCTCTGTTG
CTCACACTGTACTGGACGCTAAGAGTGTGA back to top
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