jgi.p|Nanoce1779_2|148640, mRNA_1004 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|148640
Unique Name	mRNA_1004
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1809
Alignment location	scaffold_2:990871..993057 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	148726
Track	FilteredModels2
ProteinId	148640

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:990871..993057 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|148640	gene_1004	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|148640	mRNA_1004-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1004	CDS_1004	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:990871..993057+
coding sequence from alignment at scaffold_2:990871..993057+

mRNA sequence

>mRNA_1004 ID=mRNA_1004|Name=jgi.p|Nanoce1779_2|148640|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp
GACGTGGAAGGAGGCGATGGCAGGCTTGAAAAAAGCGGCACGGTGGGGGA
CGAAGGGGGAAGGGAAGAAGCGGAAAAAAAGTAAAGGCAGTGCAGGAGGA
GGAGACAATGGGTCGGTTGCCAGTATGGGGGGTAGTGGACCAGAAGAGGT
TGCGGAAGATGGTTGAAAAAGTACTGAAATAACGAAACAGCTTTTGAATA
CCCACTGAGCCATGAAATCACTAGCTGATGAGGGCACTAACAGTTGTGAA
GAGGTGGTGACAGCGCCCATCAAAACCAATGCAGGGAGGGAGGAGGAGGA
AGGGGAGCAGCAGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGAGACGG
AGGCACAGCAACGGGAACGGCTCAAGGCCGACATACGAGCACACAATGTA
AATATGTCGTTCACCAAGATCTACTTGGACGACAAGGCCTTACTTCGAGG
TTTCAGAGTCCGTCCTTGGGTCGTACAAATGTTGATTTATCTTGTGGATC
ATGTTGTGGATCAGTGCGAAAAGGGTCAAAGTAATGGAGAAGGAGAAGCG
GTAAGGAATAAAGATGGGCACGAAGTAGAAGTCAGAGGAGAAAAGGATGA
CAACGACGATGATGATGAGCTTGACGCTGCTGTGCGGGCAGAAGCAGCTG
AAATGGCACGAGCAATGCAGGCGATGGGATGGGAGGCGCCTTTGTCTTTC
GGGGGAGGGGACGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAAGGAAAAG
ACAACGAAACGCCTTCACAGGAGCAACGGCGTCGTCTCACAAGAACAAAC
ACATCCGGTTCGGAGACCATTGGGAAGGCACTGCTGCTACTGCCACTCTA
TATCCTTACTCATCTTCGTCCCCTTTCTTCCCCGCCGACGGCAAGGACGA
AGCACCCACCGCTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCCTCTTCCT
CTGTTCCTGCTGCTCCTCCTCACGCTCCTCCCCCGCAAAAATATTGGATG
CAACGCTTCCGTTTTTTTAGCCAATTTGATCTTGGTTGTCGTTTGGACGA
AGAAGGGTGGTTCTCAATCACTCCCGAGAGAATTGCCCATCATATTGCCG
AGCGTTCTCGTTGTAATGTGGTCGTTGATCTCTTTGTAGGCTGCGGGGGC
AACGCAATTCAGTTTGCCTTGGCCTCTCACTATGTACTTGCTATTGATCT
GGACCCGACTAAGCTAGCCCTGGCGAGGCACAATGCGCGTATATATGGAG
TAGCAGATCGGATCGAATTCATCCTAGGCGATGCCCTCACCCTCCTTCCC
CGCTTTGGGCCTCTCGCGAACATCCTCTTTCTCTCTCCTCCGTGGGGGGG
TCCTGAGTACACCTCTGCCCCCACTTATTCCCTAGACCAGATTCAGTTGA
AAGGAGGGGTGGGGGGGAAGGAGATGATGAGGAGGGTGTTGGGGGTCTGT
CCAAACGTGTGTGTCTTACTACCCAGAAACGTACACTTGAGAGAACTGGC
AGAGGTGGCGGGGGGTAGGAAATGCGAGGTGGAGGAGAATATCCTGAATT
ACAAGTTGAAGACGATAACGGTTTATTACGGAGAGTGGTTCTTGCCGGCG
CCCATGTCTGATTGGACGGCCAAGAAGCAGTGGCTGCGGCTGCAACACCC
GGGGAGGGGGGGAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGGAATAAAA
GACAGAGGATGAAGGATAAGGCGGAGAAGGAGATGCTGGATTATGGGGGA
GAAGAAGCGGTTGATGCGATCTTGTGAGTGTAAAAGAATGAAAGAAATCT
TGTGAATAC

protein sequence of jgi.p|Nanoce1779_2|148640

>mRNA_1004-protein ID=mRNA_1004-protein|Name=jgi.p|Nanoce1779_2|148640|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MKSLADEGTNSCEEVVTAPIKTNAGREEEEGEQQPRQEASPEPEETEAQQ
RERLKADIRAHNVNMSFTKIYLDDKALLRGFRVRPWVVQMLIYLVDHVVD
QCEKGQSNGEGEAVRNKDGHEVEVRGEKDDNDDDDELDAAVRAEAAEMAR
AMQAMGWEAPLSFGGGDGSPGSKGKGRRKRQRNAFTGATASSHKNKHIRF
GDHWEGTAATATLYPYSSSSPFFPADGKDEAPTASFPLPPFPFPSSSVPA
APPHAPPPQKYWMQRFRFFSQFDLGCRLDEEGWFSITPERIAHHIAERSR
CNVVVDLFVGCGGNAIQFALASHYVLAIDLDPTKLALARHNARIYGVADR
IEFILGDALTLLPRFGPLANILFLSPPWGGPEYTSAPTYSLDQIQLKGGV
GGKEMMRRVLGVCPNVCVLLPRNVHLRELAEVAGGRKCEVEENILNYKLK
TITVYYGEWFLPAPMSDWTAKKQWLRLQHPGRGGGRRGEKKRKRNKRQRM
KDKAEKEMLDYGGEEAVDAIL*

mRNA from alignment at scaffold_2:990871..993057+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1004 ID=mRNA_1004|Name=jgi.p|Nanoce1779_2|148640|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp|location=Sequence derived from alignment at scaffold_2:990871..993057+ (Nannochloropsis oceanica)
GACGTGGAAGGAGGCGATGGCAGGCTTGAAAAAAGCGGCACGGTGGGGGA
CGAAGGGGGAAGGGAAGAAGCGGAAAAAAAGTAAAGGCAGTGCAGGAGGA
GGAGACAATGGGTCGGTTGCCAGTATGGGGGGTAGTGGACCAGAAGAGGT
TGCGGAAGATGGTTGAAAAAGTACTGAAATAACGAAACAGCTTTTGAATG
TACGGGGCTATTTCTTTTAATGTCAAACGTTGTGGGGATGGGAGGTTATC
TCTGAAAATCGGGCTGATTCTCGGTTTTAAAAGGTCCGAACGACGTGTGT
GAGCTCTGAGGGCTATATTGAGATAGAACACGTTGTTTAGCTCGCAATGG
GGGAGATGAAAACTACAAGTGGAGGAGGGTTAATCGCGATGCTTTTCCAT
GGGTAGGGAGGTTGTGTACGTCCTTCTCCATTTCACTCATATTCACATTA
ATATTATTCATAACAACGCACACAGACCCACTGAGCCATGAAATCACTAG
CTGATGAGGGCACTAACAGTTGTGAAGAGGTGGTGACAGCGCCCATCAAA
ACCAATGCAGGGAGGGAGGAGGAGGAAGGGGAGCAGCAGCCGCGTCAGGA
GGCGTCACCGGAGCCCGAGGAGACGGAGGCACAGCAACGGGAACGGCTCA
AGGCCGACATACGAGCACACAATGTAAATATGTCGTTCACCAAGTAAGTC
AATTTCTTTGTTGGCATACCGCCAACCCACAAGCTGCGTCGCATCACGCT
CACTTCGCATTCTCCCCTTCCTTCCTCTCTTTCGTGCACCTGCAGGATCT
ACTTGGACGACAAGGCCTTACTTCGAGGTTTCAGAGTCCGTCCTTGGGTC
GTACAAATGTTGATTTATCTTGTGGATCATGTTGTGGATCAGTGCGAAAA
GGGTCAAAGTAATGGAGAAGGAGAAGCGGTAAGGAATAAAGATGGGCACG
AAGTAGAAGTCAGAGGAGAAAAGGATGACAACGACGATGATGATGAGCTT
GACGCTGCTGTGCGGGCAGAAGCAGCTGAAATGGCACGAGCAATGCAGGC
GATGGGATGGGAGGCGCCTTTGTCTTTCGGGGGAGGGGACGGTAGCCCTG
GAAGTAAAGGCAAAGGTAGAAGGAAAAGACAACGAAACGCCTTCACAGGA
GCAACGGCGTCGTCTCACAAGAACAAACACATCCGGTTCGGAGACCATTG
GGAAGGCACTGCTGCTACTGCCACTCTATATCCTTACTCATCTTCGTCCC
CTTTCTTCCCCGCCGACGGCAAGGACGAAGCACCCACCGCTTCCTTTCCT
CTTCCTCCCTTCCCCTTCCCCTCTTCCTCTGTTCCTGCTGCTCCTCCTCA
CGCTCCTCCCCCGCAAAAATATTGGATGCAACGCTTCCGTTTTTTTAGCC
AATTTGATCTTGGTTGTCGTTTGGACGAAGAAGGGTGGTTCTCAATCACT
CCCGAGAGAATTGCCCATCATATTGCCGAGCGTTCTCGTTGTAATGTGGT
CGTTGATCTCTTTGTAGGCTGCGGGGGCAACGCAATTCAGTTTGCCTTGG
CCTCTCACTATGTACTTGCTATTGATCTGGACCCGACTAAGCTAGCCCTG
GCGAGGCACAATGCGCGTATATATGGAGTAGCAGATCGGATCGAATTCAT
CCTAGGCGATGCCCTCACCCTCCTTCCCCGCTTTGGGCCTCTCGCGAACA
TCCTCTTTCTCTCTCCTCCGTGGGGGGGTCCTGAGTACACCTCTGCCCCC
ACTTATTCCCTAGACCAGATTCAGTTGAAAGGAGGGGTGGGGGGGAAGGA
GATGATGAGGAGGGTGTTGGGGGTCTGTCCAAACGTGTGTGTCTTACTAC
CCAGAAACGTACACTTGAGAGAACTGGCAGAGGTGGCGGGGGGTAGGAAA
TGCGAGGTGGAGGAGAATATCCTGAATTACAAGTTGAAGACGATAACGGT
TTATTACGGAGAGTGGTTCTTGCCGGCGCCCATGTCTGATTGGACGGCCA
AGAAGCAGTGGCTGCGGCTGCAACACCCGGGGAGGGGGGGAGGGAGGAGA
GGAGAAAAAAAAAGAAAGAGGAATAAAAGACAGAGGATGAAGGATAAGGC
GGAGAAGGAGATGCTGGATTATGGGGGAGAAGAAGCGGTTGATGCGATCT
TGTGAGTGTAAAAGAATGAAAGAAATCTTGTGAATAC

Coding sequence (CDS) from alignment at scaffold_2:990871..993057+

>mRNA_1004 ID=mRNA_1004|Name=jgi.p|Nanoce1779_2|148640|organism=Nannochloropsis oceanica|type=CDS|length=3132bp|location=Sequence derived from alignment at scaffold_2:990871..993057+ (Nannochloropsis oceanica)
ATGAAATCACTAGCTGATGAGGGCACTAACAGTTGTGAAGAGGTGGTGAC
AGCGCCCATCAAAACCAATGCAGGGAGGGAGGAGGAGGAAGGGGAGCAGC
AGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGAGACGGAGGCACAGCAA
CGGGAACGGCTCAAGGCCGACATACGAGCACACAATGTAAATATGTCGTT
CACCAAGATCTACTTGGACGACAAGGCCTTACTTCGAGGTTTCAGAGTCC
GTCCTTGGGTCGTACAAATGTTGATTTATCTTGTGGATCATGTTGTGGAT
CAGTGCGAAAAGGGTCAAAGTAATGGAGAAGGAGAAGCGGTAAGGAATAA
AGATGGGCACGAAGTAGAAGTCAGAGGAGAAAAGGATGACAACGACGATG
ATGATGAGCTTGACGCTGCTGTGCGGGCAGAAGCAGCTGAAATGGCACGA
GCAATGCAGGCGATGGGATGGGAGGCGCCTTTGTCTTTCGGGGGAGGGGA
CGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAAGGAAAAGACAACGAAACG
CCTTCACAGGAGCAACGGCGTCGTCTCACAAGAACAAACACATCCGGTTC
GGAGACCATTGGGAAGGCACTGCTGCTACTGCCACTCTATATCCTTACTC
ATCTTCGTCCCCTTTCTTCCCCGCCGACGGCAAGGACGAAGCACCCACCG
CTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCCTCTTCCTCTGTTCCTGCT
GCTCCTCCTCACGCTCCTCCCCCGCAAAAATATTGGATGCAACGCTTCCG
TTTTTTTAGCCAATTTGATCTTGGTTGTCGTTTGGACGAAGAAGGGTGGT
TCTCAATCACTCCCGAGAGAATTGCCCATCATATTGCCGAGCGTTCTCGT
TGTAATGTGGTCGTTGATCTCTTTGTAGGCTGCGGGGGCAACGCAATTCA
GTTTGCCTTGGCCTCTCACTATGTACTTGCTATTGATCTGGACCCGACTA
AGCTAGCCCTGGCGAGGCACAATGCGCGTATATATGGAGTAGCAGATCGG
ATCGAATTCATCCTAGGCGATGCCCTCACCCTCCTTCCCCGCTTTGGGCC
TCTCGCGAACATCCTCTTTCTCTCTCCTCCGTGGGGGGGTCCTGAGTACA
CCTCTGCCCCCACTTATTCCCTAGACCAGATTCAGTTGAAAGGAGGGGTG
GGGGGGAAGGAGATGATGAGGAGGGTGTTGGGGGTCTGTCCAAACGTGTG
TGTCTTACTACCCAGAAACGTACACTTGAGAGAACTGGCAGAGGTGGCGG
GGGGTAGGAAATGCGAGGTGGAGGAGAATATCCTGAATTACAAGTTGAAG
ACGATAACGGTTTATTACGGAGAGTGGTTCTTGCCGGCGCCCATGTCTGA
TTGGACGGCCAAGAAGCAGTGGCTGCGGCTGCAACACCCGGGGAGGGGGG
GAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGGAATAAAAGACAGAGGATG
AAGGATAAGGCGGAGAAGGAGATGCTGGATTATGGGGGAGAAGAAGCGGT
TGATGCGATCTTGTGAATGAAATCACTAGCTGATGAGGGCACTAACAGTT
GTGAAGAGGTGGTGACAGCGCCCATCAAAACCAATGCAGGGAGGGAGGAG
GAGGAAGGGGAGCAGCAGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGA
GACGGAGGCACAGCAACGGGAACGGCTCAAGGCCGACATACGAGCACACA
ATGTAAATATGTCGTTCACCAAGATCTACTTGGACGACAAGGCCTTACTT
CGAGGTTTCAGAGTCCGTCCTTGGGTCGTACAAATGTTGATTTATCTTGT
GGATCATGTTGTGGATCAGTGCGAAAAGGGTCAAAGTAATGGAGAAGGAG
AAGCGGTAAGGAATAAAGATGGGCACGAAGTAGAAGTCAGAGGAGAAAAG
GATGACAACGACGATGATGATGAGCTTGACGCTGCTGTGCGGGCAGAAGC
AGCTGAAATGGCACGAGCAATGCAGGCGATGGGATGGGAGGCGCCTTTGT
CTTTCGGGGGAGGGGACGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAAGG
AAAAGACAACGAAACGCCTTCACAGGAGCAACGGCGTCGTCTCACAAGAA
CAAACACATCCGGTTCGGAGACCATTGGGAAGGCACTGCTGCTACTGCCA
CTCTATATCCTTACTCATCTTCGTCCCCTTTCTTCCCCGCCGACGGCAAG
GACGAAGCACCCACCGCTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCCTC
TTCCTCTGTTCCTGCTGCTCCTCCTCACGCTCCTCCCCCGCAAAAATATT
GGATGCAACGCTTCCGTTTTTTTAGCCAATTTGATCTTGGTTGTCGTTTG
GACGAAGAAGGGTGGTTCTCAATCACTCCCGAGAGAATTGCCCATCATAT
TGCCGAGCGTTCTCGTTGTAATGTGGTCGTTGATCTCTTTGTAGGCTGCG
GGGGCAACGCAATTCAGTTTGCCTTGGCCTCTCACTATGTACTTGCTATT
GATCTGGACCCGACTAAGCTAGCCCTGGCGAGGCACAATGCGCGTATATA
TGGAGTAGCAGATCGGATCGAATTCATCCTAGGCGATGCCCTCACCCTCC
TTCCCCGCTTTGGGCCTCTCGCGAACATCCTCTTTCTCTCTCCTCCGTGG
GGGGGTCCTGAGTACACCTCTGCCCCCACTTATTCCCTAGACCAGATTCA
GTTGAAAGGAGGGGTGGGGGGGAAGGAGATGATGAGGAGGGTGTTGGGGG
TCTGTCCAAACGTGTGTGTCTTACTACCCAGAAACGTACACTTGAGAGAA
CTGGCAGAGGTGGCGGGGGGTAGGAAATGCGAGGTGGAGGAGAATATCCT
GAATTACAAGTTGAAGACGATAACGGTTTATTACGGAGAGTGGTTCTTGC
CGGCGCCCATGTCTGATTGGACGGCCAAGAAGCAGTGGCTGCGGCTGCAA
CACCCGGGGAGGGGGGGAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGGAA
TAAAAGACAGAGGATGAAGGATAAGGCGGAGAAGGAGATGCTGGATTATG
GGGGAGAAGAAGCGGTTGATGCGATCTTGTGA

Synonyms

Publications