jgi.p|Nanoce1779_2|608610, mRNA_10029 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608610
Unique NamemRNA_10029
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length956
Alignment locationscaffold_42:85075..86363 +

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Properties
Property NameValue
TranscriptId608696
TrackFilteredModels2
ProteinId608610
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:85075..86363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608610gene_10029Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608610mRNA_10029-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10029CDS_10029Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10029 ID=mRNA_10029|Name=jgi.p|Nanoce1779_2|608610|organism=Nannochloropsis oceanica|type=mRNA|length=956bp
AATGGGAGACCACGAGGGGGTGGTTGGAATGGTAGGGTGAGAACGAGGCA
ATCTCGTAGACAATATCCATATACCAGATCCGCTTGGAAAGCAGCAATAG
GGCAAGGCATCATTTTCAGGGCTTGCACCGAGCTGTATGGCGCCCATTGG
GGTGAGAGGGGAACGGGTGCGCGTGCGCAGAAAATGCCATTTAAGCGAGC
GAAGGGCGAGTTCTCCAATTCCGCACCCTGAATGCACCCGTTAAACCAGA
GACCAGGGGCAGCTCCACCAACAAGCTGCCAGCACAAGCAAGGCTTGCCG
CCATTGACCATGACGTCGACGAGAAGTAGCAGCACTTCCTGCAGCAGCAC
AAGTCAATCAAGGCCTTTGGCATCCTACGCAAGGTGAGCAACTCTCATCA
CATCAGCCTCCTCACCCCCCACCAACGGCATGCACTCATTAGTCATTCGT
CCTTTTTCACCATGGATCGATTCGTCTTCCATTGCACGCCAAGATTGAAT
GAAGATATCACTTTACGCAGCCTGAGGCTCTCCTTTCGGAACTCCATACC
TTGGCGGCGTCATTAATGCTTCAGACATTCATATCTTATCTTTTGGCTTC
CTATCCTCTAGTTTGCGTTCTGCTTTTCCATGCACGTCCCTCTTACTCCT
ACGCTCGTGACATCATTCTCTTCGTACAAGGAAAATTAAGGCCTCGTGGT
GTCAAGCGGAAGGCAAGGCGCAGTAAGCAGGTGTCGATCGCAACGAGAGT
GCAGCGCTGCCAGCAATGGTCGTTCCAATTACTAATGAGAAAACCAGAGA
CAAGAAGGTGGAAGACGGTCTGTCACACGGGGGCAAATGGATGCTGGTCG
CTCGCTGTCTCATCGAAACTCTCAATAGTAAGGCCATGACGCACCCAAGA
AAGAGAAGATGGAGAAAGGAAGAAAAAAAGAAAAAAAATCAGAAAAACGA
GAGGTA
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protein sequence of jgi.p|Nanoce1779_2|608610

>mRNA_10029-protein ID=mRNA_10029-protein|Name=jgi.p|Nanoce1779_2|608610|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MLQTFISYLLASYPLVCVLLFHARPSYSYARDIILFVQGKLRPRGVKRKA
RRSKQVSIATRVQRCQQWSFQLLMRKPETRRWKTVCHTGANGCWSLAVSS
KLSIVRP*
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mRNA from alignment at scaffold_42:85075..86363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10029 ID=mRNA_10029|Name=jgi.p|Nanoce1779_2|608610|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp|location=Sequence derived from alignment at scaffold_42:85075..86363+ (Nannochloropsis oceanica)
AATGGGAGACCACGAGGGGGTGGTTGGAATGGTAGGGTGAGAACGAGGCA
ATCTCGTAGACAATATCCATATACCAGATCCGCTTGGAAAGCAGCAATAG
GGCAAGGCATCATTTTCAGGGCTTGCACCGAGCTGTATGGCGCCCATTGG
GGTGAGAGGGGAACGGGTGCGCGTGCGCAGAAAATGCCATTTAAGCGAGC
GAAGGGCGAGTTCTCCAATTCCGCACCCTGAATGCACCCGTTAAACCAGA
GACCAGGGGCAGCTCCACCAACAAGCTGCCAGCACAAGCAAGGCTTGCCG
CCATTGACCATGACGTCGACGAGAAGTAGCAGCACTTCCTGCAGCAGCAC
AAGTCAATCAAGGCCTTTGGCATCCTACGCAAGGTGAGCAACTCTCATCA
CATCAGCCTCCTCACCCCCCACCAACGGCATGCACTCATTAGTCATTCGT
CCTTTTTCACCATGGATCGATTCGTCTTCCATTGCACGCCAAGATTGAAT
GAAGATATCACTTTACGCAGCCTGAGGCTCTCCTTTCGGAACTCCATACC
TTGGCGGCGTCATTAATGCTTCAGACATTCATATCTTATCTTTTGGCTTC
CTATCCTCTAGTTTGCGTTCTGCTTTTCCATGCACGTCCCTCTTACTCCT
ACGCTCGTGACATCATTCTCTTCGTACAAGGAAAATTAAGGCCTCGTGGT
GTCAAGCGGAAGGCAAGGCGCAGTAAGCAGGTGTCGATCGCAACGAGAGT
GCAGCGCTGCCAGCAATGGTCGTTCCAATTACTAATGAGAAAACCAGGTA
AGCCTGCTTCATTTTTGGAAGGATGGAAGGGATAATGGACAGGCAAATGA
GAATCGCCCGATGATGATATTTGGCCTTTGCAAGGCGTCGCGACGGCTTG
TCTTTTCTCCTTCTCTCACGCAGCAATGCGTTGGGAGGAGAGGAGGGCTA
GTCTGAAAACCCCGTGGGTATACATTAAACAAGATTAATAGACTTAGGGC
GCATGCATATTCATATTTTCCCCTACTCCCTTTTTTAAATTTCTTATTCC
ATAAGGCAATTCAGTATATCTATGAATCGACTTGTTCATGCCAACTGCCA
CCCGTTGGTCCGATCATTTTTCACCCACAGAGACAAGAAGGTGGAAGACG
GTCTGTCACACGGGGGCAAATGGATGCTGGTCGCTCGCTGTCTCATCGAA
ACTCTCAATAGTAAGGCCATGACGCACCCAAGAAAGAGAAGATGGAGAAA
GGAAGAAAAAAAGAAAAAAAATCAGAAAAACGAGAGGTA
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Coding sequence (CDS) from alignment at scaffold_42:85075..86363+

>mRNA_10029 ID=mRNA_10029|Name=jgi.p|Nanoce1779_2|608610|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_42:85075..86363+ (Nannochloropsis oceanica)
ATGCTTCAGACATTCATATCTTATCTTTTGGCTTCCTATCCTCTAGTTTG
CGTTCTGCTTTTCCATGCACGTCCCTCTTACTCCTACGCTCGTGACATCA
TTCTCTTCGTACAAGGAAAATTAAGGCCTCGTGGTGTCAAGCGGAAGGCA
AGGCGCAGTAAGCAGGTGTCGATCGCAACGAGAGTGCAGCGCTGCCAGCA
ATGGTCGTTCCAATTACTAATGAGAAAACCAGAGACAAGAAGGTGGAAGA
CGGTCTGTCACACGGGGGCAAATGGATGCTGGTCGCTCGCTGTCTCATCG
AAACTCTCAATAGTAAGGCCATGAATGCTTCAGACATTCATATCTTATCT
TTTGGCTTCCTATCCTCTAGTTTGCGTTCTGCTTTTCCATGCACGTCCCT
CTTACTCCTACGCTCGTGACATCATTCTCTTCGTACAAGGAAAATTAAGG
CCTCGTGGTGTCAAGCGGAAGGCAAGGCGCAGTAAGCAGGTGTCGATCGC
AACGAGAGTGCAGCGCTGCCAGCAATGGTCGTTCCAATTACTAATGAGAA
AACCAGAGACAAGAAGGTGGAAGACGGTCTGTCACACGGGGGCAAATGGA
TGCTGGTCGCTCGCTGTCTCATCGAAACTCTCAATAGTAAGGCCATGA
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Synonyms
Publications