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Properties
| Property Name | Value |
|---|
| TranscriptId | 660760 |
| Track | FilteredModels2 |
| ProteinId | 660674 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_42 | supercontig | scaffold_42:82504..85035 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10028 ID=mRNA_10028|Name=jgi.p|Nanoce1779_2|660674|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp
ATGACGATGATGGATGTGGTCGACGCCAGCATACAACCACGGGACAGCCG
CAACCAATCCTTGGCCACGGACCTCGTCCCTGGGGCCGTCCCCCGCGACG
ATGACGAAGAGGAGCCCACCCCCGTCAAACGCTTGGATGCAGCCTTCGAA
GTCGTTACGAAGCAAAACCCTCTAGACGATGCCCCAGCATTGCAGGTAGC
GTTACGTGTCCGGCCTTTGCTGCCTGGGTTGGCCGAAAAGTCGTGCATGC
AGATTATTTCGGACCGGAAGGTGCATACCACCACCCCGCCAAGCTCAGTT
TATTTCAAGATCACAGGGGGTCAAGTCAAGGAGTTCACCTTCCACAAGGT
TTTCGGGCCGGAGAGCAGTCAGGAGGCACTCTACATCCAGACGACTCAGC
CTCTGGTGGATGCATTGTGGTTGGGGAAGAGCGGGCTGCTGTTTGCATAC
GGTGTCACAAATGCAGGGAAAACACACACCATCATGGGGAAGGAGGGAGA
GAAGGAGGCAGGGGTCTTGCCGCGGGCGTTGAAAGATTTGTTTGCCCGAG
TGGAGAGGGAAGAAGAGGGGAGGAGGATGGTTTTGGAGGAGGGGACGAAG
GGTGGTGGTGGTGGAGGAGGGGCAGGGGAGGCGACGCCGACGCCGATGTG
TTCGGTTGTGTGTTCCTACCTGGAAGTCTATAATGACCAAGTCTATGATT
TGTTGGCGGAGGATCCCGTGGGCGCTGGCAGCAAGCGGCCGGCACTCAAG
CCGGCAGATAGAGGAGGAAAGGTCGAGGTAGGGAGGACGGTGATGCTGTT
GTGCGTCAACCCCAGCGAGCGGGATTACGACGAGACCATGCACGTCCTAG
GGCAGGGGGCAGGGGTGCAGGAGGTCCGGGTAGTGAGGGATGGGGGGAGG
GAGAGGCGGGCGGCCTTGCTCCTGGGAGGGGTGAGGGGGTGGGGGCCAGA
CGGGAGGAGGAAGGGGGGAGGGAAGGAGGGGGGGGGGGGGGAGGATATGA
TGGGAGGCGGCTGGTGAAGAGGAGAAAATCGGTGGGACTGGTGGGAGGAA
GGGAGGGAGGGAGGAAGGAGGGCGGATTGAGCGCCTTTGGAGAGAGTGCT
GCTGTTGCTGCTGCTGTTGGATCTGCGGTGGCTGGTGCCAAAAAGGAGAA
GGGGAAGCAACTGGTTGATTTGCATGACAGAAAGGAGGAGAAGGGAGAGG
AGGAGGAGGAGGAAGAGGACGAGGAAGAGGAAGAGGAGACGATGTCAGGA
GTGGAGTCGGATGGGGCTATTGCGACCAAGACCGGCCGTCGCTCTCTGGC
TGTGCGGGAGGAGATTCAGGAGTTGTTGGAGGAAAACCGAGCGCTGAGGG
ACACGATCGAAGCGCTCAAGGAGGCGTTGGCCCGGGCCGAGACGGAGATA
AGGGAGGAGGTGGCGGGGGAGATGGCCTCGAGGATGGAGAAGCTAGAGGG
GG back to topprotein sequence of jgi.p|Nanoce1779_2|660674 >mRNA_10028-protein ID=mRNA_10028-protein|Name=jgi.p|Nanoce1779_2|660674|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MTMMDVVDASIQPRDSRNQSLATDLVPGAVPRDDDEEEPTPVKRLDAAFE
VVTKQNPLDDAPALQVALRVRPLLPGLAEKSCMQIISDRKVHTTTPPSSV
YFKITGGQVKEFTFHKVFGPESSQEALYIQTTQPLVDALWLGKSGLLFAY
GVTNAGKTHTIMGKEGEKEAGVLPRALKDLFARVEREEEGRRMVLEEGTK
GGGGGGGAGEATPTPMCSVVCSYLEVYNDQVYDLLAEDPVGAGSKRPALK
PADRGGKVEVGRTVMLLCVNPSERDYDETMHVLGQGAGVQEVRVVRDGGR
ERRAALLLGGVRGWGPDGRRKGGGKEGGGGEDMMGGGW* back to topmRNA from alignment at scaffold_42:82504..85035- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10028 ID=mRNA_10028|Name=jgi.p|Nanoce1779_2|660674|organism=Nannochloropsis oceanica|type=mRNA|length=2532bp|location=Sequence derived from alignment at scaffold_42:82504..85035- (Nannochloropsis oceanica)
ATGACGATGATGGATGTGGTCGACGCCAGCATACAACCACGGGACAGCCG
CAACCAATCCTTGGCCACGGACCTCGTCCCTGGGGCCGTCCCCCGCGACG
ATGACGAAGAGGAGCCCACCCCCGTCAAACGCTTGGATGCAGCCTTCGAA
GTCGTTACGAAGCAAAACCCTCTAGACGATGCCCCAGCATTGCAGGTAGC
GTTACGTGTCCGGCCTTTGCTGCCTGGGTTGGCCGAAAAGTCGTGCATGC
AGATTATTTCGGACCGGAAGGTGCATACCACCACCCCGCCAAGCTCAGGT
GAGACAAGCGAGGAAAGGAGGAATGGCGGGTCGAAAAGAGAGGAATCGAT
TGGAAACATTCATAACGAAGAAAAGGCGTCCAGACTTTCATTAATTGACT
TGTTGACCCTCTTTAACCCCCTCCTGTCTCGCCCACAGTTTATTTCAAGA
TCACAGGGGGTCAAGTCAAGGAGTTCACCTTCCACAAGGTTTTCGGGCCG
GAGAGCAGTCAGGAGGCACTCTACATCCAGACGACTCAGCCTCTGGTGGA
TGCATTGTGGTTGGGGAAGAGCGGGCTGCTGTTTGCATACGGTGTCACAA
ATGCAGGTAGGATATACACCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCC
TCGCTGCATGTCCAAGGCGTCCTTGTGCTCTCTGCGTATTCGCGTCCATT
CAATGCACTGATCTCCAGTGTAGAGAGATGCCACCCTAGCGTCAATGCCT
CTCTCATCAACGTGACCCCTACATCTCAACCATAGGGAAAACACACACCA
TCATGGGGAAGGAGGGAGAGAAGGAGGCAGGGGTCTTGCCGCGGGCGTTG
AAAGATTTGTTTGCCCGAGTGGAGAGGGAAGAAGAGGGGAGGAGGATGGT
TTTGGAGGAGGGGACGAAGGGTGGTGGTGGTGGAGGAGGGGCAGGGGAGG
CGACGCCGACGCCGATGTGTTCGGTTGTGTGTTCCTACCTGGAAGTCTAT
AATGACCAAGTCTATGATTTGTTGGCGGGTGAGGAGCACGGGGAGGGAGG
GAGTGAGACGGAGAGATGTTGGTTGTCTCGGTCTTCGTTGCGTGTCTTTT
ATGCTTATCTCTCTCTCCCTCTCCCCCCCCCCCTTCCTCCCTCCCTCCCT
CCTTCCCTCCCTTCTTGCAGAGGATCCCGTGGGCGCTGGCAGCAAGCGGC
CGGCACTCAAGCCGGCAGATAGAGGAGGAAAGGTCGAGGTGAAGGGCTTG
TCCAAGCACACCATCAGAGATGTGACCTCGGGGGTAAGGAAGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGTAGTGCG
AAGGTAGATGGGAGTGGACCGCTGACCCTCTTTTCCTCCCCACTCCCCCC
CCTCCTTCACACCCTCTAGCTCGCCCTGGTAAGGCAAGGCGCACAAAACC
GTCGCATTGCGGCCACACGGCTCAACCTGGACTCCTCCCGCAGTCATTCC
GTGTTCACCGTCGAGCTGCTGAGGGAGGGCGGGAGGGAGGGCGGGAGGGA
GGGCGGGCAAGGACGGGAGGGAGGGACGTTGTGGATCGTTGATTTGGCCG
GGTCGGAGAGAGGAGGTAGGACAGGGCACTGGGTAGACAGAAAGCTGCAG
CGGGAAACGAGTGGGATAAACACGTCGTTAATGAAGCTCTGGCGGTGCCT
GGACTCGCTCCGACGGAATCAGGCGGCTGCCACTGCTGCTGCTGCTGCTG
CTGCAGCTGCTGCTGCGACGACTGCGTCCTCCTCGTCGTCCTCGGTGGTG
CCGTACCGAGAGAGCAGGCTGACGCACTTGTTCATGAACCATTTGTCGGG
GTCAAAGGTAGGGAGGACGGTGATGCTGTTGTGCGTCAACCCCAGCGAGC
GGGATTACGACGAGACCATGCACGTCCTAGGGCAGGGGGCAGGGGTGCAG
GAGGTCCGGGTAGTGAGGGATGGGGGGAGGGAGAGGCGGGCGGCCTTGCT
CCTGGGAGGGGTGAGGGGGTGGGGGCCAGACGGGAGGAGGAAGGGGGGAG
GGAAGGAGGGGGGGGGGGGGGAGGATATGATGGGAGGCGGCTGGTGAAGA
GGAGAAAATCGGTGGGACTGGTGGGAGGAAGGGAGGGAGGGAGGAAGGAG
GGCGGATTGAGCGCCTTTGGAGAGAGTGCTGCTGTTGCTGCTGCTGTTGG
ATCTGCGGTGGCTGGTGCCAAAAAGGAGAAGGGGAAGCAACTGGTTGATT
TGCATGACAGAAAGGAGGAGAAGGGAGAGGAGGAGGAGGAGGAAGAGGAC
GAGGAAGAGGAAGAGGAGACGATGTCAGGAGTGGAGTCGGATGGGGCTAT
TGCGACCAAGACCGGCCGTCGCTCTCTGGCTGTGCGGGAGGAGATTCAGG
AGTTGTTGGAGGAAAACCGAGCGCTGAGGGACACGATCGAAGCGCTCAAG
GAGGCGTTGGCCCGGGCCGAGACGGAGATAAGGGAGGAGGTGGCGGGGGA
GATGGCCTCGAGGATGGAGAAGCTAGAGGGGG back to topCoding sequence (CDS) from alignment at scaffold_42:82504..85035- >mRNA_10028 ID=mRNA_10028|Name=jgi.p|Nanoce1779_2|660674|organism=Nannochloropsis oceanica|type=CDS|length=5085bp|location=Sequence derived from alignment at scaffold_42:82504..85035- (Nannochloropsis oceanica)
GTAGGGAGGACGGTGATGCTGTTGTGCGTCAACCCCAGCGAGCGGGATTA
CGACGAGACCATGCACGTCCTAGGGCAGGGGGCAGGGGTGCAGGAGGTCC
GGGTAGTGAGGGATGGGGGGAGGGAGAGGCGGGCGGCCTTGCTCCTGGGA
GGGGTGAGGGGGTGGGGGCCAGACGGGAGGAGGAAGGGGGGAGGGAAGGA
GGGGGGGGGGGGGGAGGATATGATGGGAGGCGGCTGGTGAAGGATCCCGT
GGGCGCTGGCAGCAAGCGGCCGGCACTCAAGCCGGCAGATAGAGGAGGAA
AGGTCGAGGGAAAACACACACCATCATGGGGAAGGAGGGAGAGAAGGAGG
CAGGGGTCTTGCCGCGGGCGTTGAAAGATTTGTTTGCCCGAGTGGAGAGG
GAAGAAGAGGGGAGGAGGATGGTTTTGGAGGAGGGGACGAAGGGTGGTGG
TGGTGGAGGAGGGGCAGGGGAGGCGACGCCGACGCCGATGTGTTCGGTTG
TGTGTTCCTACCTGGAAGTCTATAATGACCAAGTCTATGATTTGTTGGCG
GTTTATTTCAAGATCACAGGGGGTCAAGTCAAGGAGTTCACCTTCCACAA
GGTTTTCGGGCCGGAGAGCAGTCAGGAGGCACTCTACATCCAGACGACTC
AGCCTCTGGTGGATGCATTGTGGTTGGGGAAGAGCGGGCTGCTGTTTGCA
TACGGTGTCACAAATGCAGATGACGATGATGGATGTGGTCGACGCCAGCA
TACAACCACGGGACAGCCGCAACCAATCCTTGGCCACGGACCTCGTCCCT
GGGGCCGTCCCCCGCGACGATGACGAAGAGGAGCCCACCCCCGTCAAACG
CTTGGATGCAGCCTTCGAAGTCGTTACGAAGCAAAACCCTCTAGACGATG
CCCCAGCATTGCAGGTAGCGTTACGTGTCCGGCCTTTGCTGCCTGGGTTG
GCCGAAAAGTCGTGCATGCAGATTATTTCGGACCGGAAGGTGCATACCAC
CACCCCGCCAAGCTCAGGTAGGGAGGACGGTGATGCTGTTGTGCGTCAAC
CCCAGCGAGCGGGATTACGACGAGACCATGCACGTCCTAGGGCAGGGGGC
AGGGGTGCAGGAGGTCCGGGTAGTGAGGGATGGGGGGAGGGAGAGGCGGG
CGGCCTTGCTCCTGGGAGGGGTGAGGGGGTGGGGGCCAGACGGGAGGAGG
AAGGGGGGAGGGAAGGAGGGGGGGGGGGGGGAGGATATGATGGGAGGCGG
CTGGTGAAGGATCCCGTGGGCGCTGGCAGCAAGCGGCCGGCACTCAAGCC
GGCAGATAGAGGAGGAAAGGTCGAGGGAAAACACACACCATCATGGGGAA
GGAGGGAGAGAAGGAGGCAGGGGTCTTGCCGCGGGCGTTGAAAGATTTGT
TTGCCCGAGTGGAGAGGGAAGAAGAGGGGAGGAGGATGGTTTTGGAGGAG
GGGACGAAGGGTGGTGGTGGTGGAGGAGGGGCAGGGGAGGCGACGCCGAC
GCCGATGTGTTCGGTTGTGTGTTCCTACCTGGAAGTCTATAATGACCAAG
TCTATGATTTGTTGGCGGTTTATTTCAAGATCACAGGGGGTCAAGTCAAG
GAGTTCACCTTCCACAAGGTTTTCGGGCCGGAGAGCAGTCAGGAGGCACT
CTACATCCAGACGACTCAGCCTCTGGTGGATGCATTGTGGTTGGGGAAGA
GCGGGCTGCTGTTTGCATACGGTGTCACAAATGCAGATGACGATGATGGA
TGTGGTCGACGCCAGCATACAACCACGGGACAGCCGCAACCAATCCTTGG
CCACGGACCTCGTCCCTGGGGCCGTCCCCCGCGACGATGACGAAGAGGAG
CCCACCCCCGTCAAACGCTTGGATGCAGCCTTCGAAGTCGTTACGAAGCA
AAACCCTCTAGACGATGCCCCAGCATTGCAGGTAGCGTTACGTGTCCGGC
CTTTGCTGCCTGGGTTGGCCGAAAAGTCGTGCATGCAGATTATTTCGGAC
CGGAAGGTGCATACCACCACCCCGCCAAGCTCAGGTAGGGAGGACGGTGA
TGCTGTTGTGCGTCAACCCCAGCGAGCGGGATTACGACGAGACCATGCAC
GTCCTAGGGCAGGGGGCAGGGGTGCAGGAGGTCCGGGTAGTGAGGGATGG
GGGGAGGGAGAGGCGGGCGGCCTTGCTCCTGGGAGGGGTGAGGGGGTGGG
GGCCAGACGGGAGGAGGAAGGGGGGAGGGAAGGAGGGGGGGGGGGGGGAG
GATATGATGGGAGGCGGCTGGTGAAGGATCCCGTGGGCGCTGGCAGCAAG
CGGCCGGCACTCAAGCCGGCAGATAGAGGAGGAAAGGTCGAGGGAAAACA
CACACCATCATGGGGAAGGAGGGAGAGAAGGAGGCAGGGGTCTTGCCGCG
GGCGTTGAAAGATTTGTTTGCCCGAGTGGAGAGGGAAGAAGAGGGGAGGA
GGATGGTTTTGGAGGAGGGGACGAAGGGTGGTGGTGGTGGAGGAGGGGCA
GGGGAGGCGACGCCGACGCCGATGTGTTCGGTTGTGTGTTCCTACCTGGA
AGTCTATAATGACCAAGTCTATGATTTGTTGGCGGTTTATTTCAAGATCA
CAGGGGGTCAAGTCAAGGAGTTCACCTTCCACAAGGTTTTCGGGCCGGAG
AGCAGTCAGGAGGCACTCTACATCCAGACGACTCAGCCTCTGGTGGATGC
ATTGTGGTTGGGGAAGAGCGGGCTGCTGTTTGCATACGGTGTCACAAATG
CAGATGACGATGATGGATGTGGTCGACGCCAGCATACAACCACGGGACAG
CCGCAACCAATCCTTGGCCACGGACCTCGTCCCTGGGGCCGTCCCCCGCG
ACGATGACGAAGAGGAGCCCACCCCCGTCAAACGCTTGGATGCAGCCTTC
GAAGTCGTTACGAAGCAAAACCCTCTAGACGATGCCCCAGCATTGCAGGT
AGCGTTACGTGTCCGGCCTTTGCTGCCTGGGTTGGCCGAAAAGTCGTGCA
TGCAGATTATTTCGGACCGGAAGGTGCATACCACCACCCCGCCAAGCTCA
GGTAGGGAGGACGGTGATGCTGTTGTGCGTCAACCCCAGCGAGCGGGATT
ACGACGAGACCATGCACGTCCTAGGGCAGGGGGCAGGGGTGCAGGAGGTC
CGGGTAGTGAGGGATGGGGGGAGGGAGAGGCGGGCGGCCTTGCTCCTGGG
AGGGGTGAGGGGGTGGGGGCCAGACGGGAGGAGGAAGGGGGGAGGGAAGG
AGGGGGGGGGGGGGGAGGATATGATGGGAGGCGGCTGGTGAAGGATCCCG
TGGGCGCTGGCAGCAAGCGGCCGGCACTCAAGCCGGCAGATAGAGGAGGA
AAGGTCGAGGGAAAACACACACCATCATGGGGAAGGAGGGAGAGAAGGAG
GCAGGGGTCTTGCCGCGGGCGTTGAAAGATTTGTTTGCCCGAGTGGAGAG
GGAAGAAGAGGGGAGGAGGATGGTTTTGGAGGAGGGGACGAAGGGTGGTG
GTGGTGGAGGAGGGGCAGGGGAGGCGACGCCGACGCCGATGTGTTCGGTT
GTGTGTTCCTACCTGGAAGTCTATAATGACCAAGTCTATGATTTGTTGGC
GGTTTATTTCAAGATCACAGGGGGTCAAGTCAAGGAGTTCACCTTCCACA
AGGTTTTCGGGCCGGAGAGCAGTCAGGAGGCACTCTACATCCAGACGACT
CAGCCTCTGGTGGATGCATTGTGGTTGGGGAAGAGCGGGCTGCTGTTTGC
ATACGGTGTCACAAATGCAGATGACGATGATGGATGTGGTCGACGCCAGC
ATACAACCACGGGACAGCCGCAACCAATCCTTGGCCACGGACCTCGTCCC
TGGGGCCGTCCCCCGCGACGATGACGAAGAGGAGCCCACCCCCGTCAAAC
GCTTGGATGCAGCCTTCGAAGTCGTTACGAAGCAAAACCCTCTAGACGAT
GCCCCAGCATTGCAGGTAGCGTTACGTGTCCGGCCTTTGCTGCCTGGGTT
GGCCGAAAAGTCGTGCATGCAGATTATTTCGGACCGGAAGGTGCATACCA
CCACCCCGCCAAGCTCAGGTAGGGAGGACGGTGATGCTGTTGTGCGTCAA
CCCCAGCGAGCGGGATTACGACGAGACCATGCACGTCCTAGGGCAGGGGG
CAGGGGTGCAGGAGGTCCGGGTAGTGAGGGATGGGGGGAGGGAGAGGCGG
GCGGCCTTGCTCCTGGGAGGGGTGAGGGGGTGGGGGCCAGACGGGAGGAG
GAAGGGGGGAGGGAAGGAGGGGGGGGGGGGGGAGGATATGATGGGAGGCG
GCTGGTGAAGGATCCCGTGGGCGCTGGCAGCAAGCGGCCGGCACTCAAGC
CGGCAGATAGAGGAGGAAAGGTCGAGGGAAAACACACACCATCATGGGGA
AGGAGGGAGAGAAGGAGGCAGGGGTCTTGCCGCGGGCGTTGAAAGATTTG
TTTGCCCGAGTGGAGAGGGAAGAAGAGGGGAGGAGGATGGTTTTGGAGGA
GGGGACGAAGGGTGGTGGTGGTGGAGGAGGGGCAGGGGAGGCGACGCCGA
CGCCGATGTGTTCGGTTGTGTGTTCCTACCTGGAAGTCTATAATGACCAA
GTCTATGATTTGTTGGCGGTTTATTTCAAGATCACAGGGGGTCAAGTCAA
GGAGTTCACCTTCCACAAGGTTTTCGGGCCGGAGAGCAGTCAGGAGGCAC
TCTACATCCAGACGACTCAGCCTCTGGTGGATGCATTGTGGTTGGGGAAG
AGCGGGCTGCTGTTTGCATACGGTGTCACAAATGCAGATGACGATGATGG
ATGTGGTCGACGCCAGCATACAACCACGGGACAGCCGCAACCAATCCTTG
GCCACGGACCTCGTCCCTGGGGCCGTCCCCCGCGACGATGACGAAGAGGA
GCCCACCCCCGTCAAACGCTTGGATGCAGCCTTCGAAGTCGTTACGAAGC
AAAACCCTCTAGACGATGCCCCAGCATTGCAGGTAGCGTTACGTGTCCGG
CCTTTGCTGCCTGGGTTGGCCGAAAAGTCGTGCATGCAGATTATTTCGGA
CCGGAAGGTGCATACCACCACCCCGCCAAGCTCAG back to top
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