jgi.p|Nanoce1779_2|633747, mRNA_10027 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633747
Unique NamemRNA_10027
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length948
Alignment locationscaffold_42:81587..82534 -

Link to JBrowse

Properties
Property NameValue
TranscriptId633833
TrackFilteredModels2
ProteinId633747
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:81587..82534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633747gene_10027Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10027CDS_10027Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633747mRNA_10027-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10027 ID=mRNA_10027|Name=jgi.p|Nanoce1779_2|633747|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
ATGGCCTCGAGGATGGAGAAGCTAGAGGGGGAGTTGAGAAGGAGGAGAAG
GAGGGAGGGGTTTGAGGAGGAGGAGGAGGACGGCGGGGGGAAGGGGGGAG
GGAGGGCGGCAGAGAGGATACACGTGGCGAGGCTGGAGGGGTGCGTGAGG
GCATTGGAGAGGGAGAAGGAGGAAGGGGAGGAGGAGGTCAAGCGGCTGAG
GGAGAGATATGAGGATGATATTCAGGAGCTCAAGACGAAGATACGGAAGA
TGGAGGAGGGGGAGGGAGGAGTGAGGGAGGAGCTGATGAAGTCGCAGGCG
GAAGTAGCCGTGTGGAGGGTCAGGGCTGAGAAGGCAGAGGGGGGAGGGAA
TGGAGGAGGAGTGAAGGAGGGGAAAAAAGAGGAGTCGACGGTAGCCTCGG
CACCCACACGGGCGACACGAGAAGGAGGGGGAGGGAGTGGGGGAAGGAGG
AACAAGCGATCCAAGGGCGAGGGCGTTGAACACGGAGGGAAGGACGATGG
TTTCGAAGACTTGATCGAGGAGAAGGAGAACGGACGGACGTCACACAACT
CCCTCCAACCCGCACCGGAGAAAGAGGAAGGAGAGAGCATGGAGGTCGTG
GGGGGAACGAGGGAAGAACAGCGGGAAGAACAGCGGGAAGAGGAGGAGGT
GGAGGAGGTAGAGGACGAGGAGGAGGAGGAGGAGGAGGAGAAGCCCACAT
CGAAGCAGGATAGAAAGGTGAAGATCCAAGAGCGGATTCGAAGGCAAATT
AAGAACACGACGACGAAGAATGGAACGGCCAGGCCCAAGGCAAAAAAAGC
TGCTGCTGCTGCTGCGGCGGCGGCGGCGGTAGCAGCGGCGGGAGGAGATG
TGGGGGAGGAGGGAGGGGAGGAGAGGGGACCGGTTGATGGGGGTGCCAGG
AAAGAGGGGAAGACGCCGGTAGCCCGGAGATTGCGTAGCAGACCATGA
back to top

protein sequence of jgi.p|Nanoce1779_2|633747

>mRNA_10027-protein ID=mRNA_10027-protein|Name=jgi.p|Nanoce1779_2|633747|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MASRMEKLEGELRRRRRREGFEEEEEDGGGKGGGRAAERIHVARLEGCVR
ALEREKEEGEEEVKRLRERYEDDIQELKTKIRKMEEGEGGVREELMKSQA
EVAVWRVRAEKAEGGGNGGGVKEGKKEESTVASAPTRATREGGGGSGGRR
NKRSKGEGVEHGGKDDGFEDLIEEKENGRTSHNSLQPAPEKEEGESMEVV
GGTREEQREEQREEEEVEEVEDEEEEEEEEKPTSKQDRKVKIQERIRRQI
KNTTTKNGTARPKAKKAAAAAAAAAAVAAAGGDVGEEGGEERGPVDGGAR
KEGKTPVARRLRSRP*
back to top

mRNA from alignment at scaffold_42:81587..82534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10027 ID=mRNA_10027|Name=jgi.p|Nanoce1779_2|633747|organism=Nannochloropsis oceanica|type=mRNA|length=948bp|location=Sequence derived from alignment at scaffold_42:81587..82534- (Nannochloropsis oceanica)
ATGGCCTCGAGGATGGAGAAGCTAGAGGGGGAGTTGAGAAGGAGGAGAAG
GAGGGAGGGGTTTGAGGAGGAGGAGGAGGACGGCGGGGGGAAGGGGGGAG
GGAGGGCGGCAGAGAGGATACACGTGGCGAGGCTGGAGGGGTGCGTGAGG
GCATTGGAGAGGGAGAAGGAGGAAGGGGAGGAGGAGGTCAAGCGGCTGAG
GGAGAGATATGAGGATGATATTCAGGAGCTCAAGACGAAGATACGGAAGA
TGGAGGAGGGGGAGGGAGGAGTGAGGGAGGAGCTGATGAAGTCGCAGGCG
GAAGTAGCCGTGTGGAGGGTCAGGGCTGAGAAGGCAGAGGGGGGAGGGAA
TGGAGGAGGAGTGAAGGAGGGGAAAAAAGAGGAGTCGACGGTAGCCTCGG
CACCCACACGGGCGACACGAGAAGGAGGGGGAGGGAGTGGGGGAAGGAGG
AACAAGCGATCCAAGGGCGAGGGCGTTGAACACGGAGGGAAGGACGATGG
TTTCGAAGACTTGATCGAGGAGAAGGAGAACGGACGGACGTCACACAACT
CCCTCCAACCCGCACCGGAGAAAGAGGAAGGAGAGAGCATGGAGGTCGTG
GGGGGAACGAGGGAAGAACAGCGGGAAGAACAGCGGGAAGAGGAGGAGGT
GGAGGAGGTAGAGGACGAGGAGGAGGAGGAGGAGGAGGAGAAGCCCACAT
CGAAGCAGGATAGAAAGGTGAAGATCCAAGAGCGGATTCGAAGGCAAATT
AAGAACACGACGACGAAGAATGGAACGGCCAGGCCCAAGGCAAAAAAAGC
TGCTGCTGCTGCTGCGGCGGCGGCGGCGGTAGCAGCGGCGGGAGGAGATG
TGGGGGAGGAGGGAGGGGAGGAGAGGGGACCGGTTGATGGGGGTGCCAGG
AAAGAGGGGAAGACGCCGGTAGCCCGGAGATTGCGTAGCAGACCATGA
back to top

Coding sequence (CDS) from alignment at scaffold_42:81587..82534-

>mRNA_10027 ID=mRNA_10027|Name=jgi.p|Nanoce1779_2|633747|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_42:81587..82534- (Nannochloropsis oceanica)
ATGGCCTCGAGGATGGAGAAGCTAGAGGGGGAGTTGAGAAGGAGGAGAAG
GAGGGAGGGGTTTGAGGAGGAGGAGGAGGACGGCGGGGGGAAGGGGGGAG
GGAGGGCGGCAGAGAGGATACACGTGGCGAGGCTGGAGGGGTGCGTGAGG
GCATTGGAGAGGGAGAAGGAGGAAGGGGAGGAGGAGGTCAAGCGGCTGAG
GGAGAGATATGAGGATGATATTCAGGAGCTCAAGACGAAGATACGGAAGA
TGGAGGAGGGGGAGGGAGGAGTGAGGGAGGAGCTGATGAAGTCGCAGGCG
GAAGTAGCCGTGTGGAGGGTCAGGGCTGAGAAGGCAGAGGGGGGAGGGAA
TGGAGGAGGAGTGAAGGAGGGGAAAAAAGAGGAGTCGACGGTAGCCTCGG
CACCCACACGGGCGACACGAGAAGGAGGGGGAGGGAGTGGGGGAAGGAGG
AACAAGCGATCCAAGGGCGAGGGCGTTGAACACGGAGGGAAGGACGATGG
TTTCGAAGACTTGATCGAGGAGAAGGAGAACGGACGGACGTCACACAACT
CCCTCCAACCCGCACCGGAGAAAGAGGAAGGAGAGAGCATGGAGGTCGTG
GGGGGAACGAGGGAAGAACAGCGGGAAGAACAGCGGGAAGAGGAGGAGGT
GGAGGAGGTAGAGGACGAGGAGGAGGAGGAGGAGGAGGAGAAGCCCACAT
CGAAGCAGGATAGAAAGGTGAAGATCCAAGAGCGGATTCGAAGGCAAATT
AAGAACACGACGACGAAGAATGGAACGGCCAGGCCCAAGGCAAAAAAAGC
TGCTGCTGCTGCTGCGGCGGCGGCGGCGGTAGCAGCGGCGGGAGGAGATG
TGGGGGAGGAGGGAGGGGAGGAGAGGGGACCGGTTGATGGGGGTGCCAGG
AAAGAGGGGAAGACGCCGGTAGCCCGGAGATTGCGTAGCAGACCATGA
back to top
Synonyms
Publications