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Properties
| Property Name | Value |
|---|
| TranscriptId | 633832 |
| Track | FilteredModels2 |
| ProteinId | 633746 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_42 | supercontig | scaffold_42:78887..81111 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10026 ID=mRNA_10026|Name=jgi.p|Nanoce1779_2|633746|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
GATGCTCTTTGTACCTCCGCGTTACTAGGCTGTGGCAACTGCGTGTGAAA
TTAGAAGACATAACTGTCAGGCTGCCCACAAACTTCAGTGGTACGCATGA
TATCTCTGGTTTCACAAGCCGGTGGACATAGATCAGGATCGTGTGTGCGT
CAGGCGTTGGAAGAAGCCGTTGGCGATGAAGAACACAGCACACAAGTCGA
TCCCCATCCCATATACACACTCAACGCAGGGTAACGCAGCCGCATATACA
GTGGCTGCGGTAGAAGGAGAGTCTTTATGCCGAGACGGAGCACTTCTTGT
CCTTGCTGGCAGAGCATCTGCCTGTTCTTTTTCCTTTTTTGCAGAAACGT
CATCGCTGCCTTCGTCCTGCCTTTCTCCAGCAGCAGCAGCAGCAGCGCTA
TCAACACATGTGGCCGCCAAGCCAAATCTTACCGGGCATCGCAACCACCA
GCAGTATTAGTTAAATGCAATGTACAGTCAACGGCAGCAGTAGGAATTGA
TCGTGGGGCATGGTTAAGACGCCCACGATGTCTCGCTCCTCTATCTGCCG
TGTCGGACCCCGTGGAACAACAACAACTCAAGGAGATTCCGCATGGGATC
GCCCGCAAGCAAAATACAGTGCCCTCCTCCTCCCCTCCCTTCGATTGCTC
TCCTCGCCTCCTCCTCGCTAGCGGAGGTTTTCGCGATGAAGCGCGCATTC
AATTTCTATCTGACGAGATTCGGAATTTCTTCGGGGAGGGCGTTTCGGAA
CTCCTCTTCATCCCCTTTGGCGCGAAAGACCATGTTGCCTGCATGAATAC
GCACGAGACGTCGGGTATGGCAGGCGGGTACAAATTGAGGTCGATTGATA
ATGAAAAGGATCCTTCGGCAGCGATTAAGCGATCGCAAGGCATTTATGTC
TGCGGTGGGAATGTCTTCCGCCTCCTCCGAGAGCTGCGCCGACGCGGGTT
GCTCGAGGATGTGCGGGAGGCAGTGATGGAGGGAGGGATACCGTACCTGG
GCATCTCGGCGGGCACTGTCTTGGCCTGTCCCACGATCTGTACCAGCAAC
GACATGCCCATCGTCGATCCGGGTGTTGCAGCTGGAGAGTCTCTTGCTGC
TGCTGCCTCCGATATTTTTTCTACTACCGTTGCTTCTTCTCCTTTTTCCA
ATCCCCGTCCTTCTTCTCCTTCTTCTCTTCCTCTTCCTCCTTCTTCTTTC
TCTGCCCTTAGCGCTCTGGGTCTGATCGATTTCCAAATCAACGCTCACTT
TTTCGGTGGTGAATTCTACAGCCAAGACCCAGTCACGGGCAAGTTCCAAG
TCCACTTCGGCATGAACCGCGTTGAACGCATCAGAGAATTCCTTGAAGAC
GTGAGCGACGACGCCCCTGTTCCAGTGGTGGGGCTGGCGGAAGGTTGTAT
GCTGAAATGCGAGGGCGGGAAAATCGAATTGCTTGGGGAAAGTTTCAGTC
CACCGGGGAGTCCCATGACAATTTTTAGGAAGCACTTCACGCCATTGGAG
GTGAAGGACGTTAAAGGCAAAGATCTAGCGCCCTTGATTCGAGGATAGTA
CGTGTATCTAAAGCCTAAGAATTTGTTTTGTTTTCAGTCGAAAAGGTGAA
GGGGTGGGAGGTAGGGAGATAATGTGGGAGGGAGGAAAGAGGGCCTACTC
TGACATGTGTTCAAATCCATGAACGACAAACCCATCACTGTATGTATCTT
AAAAGATGGAGATTGACAAACGAATGGATAGTATATTAACAAAAAAAGAA
ATCGATCCCGCCTGCCTCGTTTAATGGCTTGCGA back to topprotein sequence of jgi.p|Nanoce1779_2|633746 >mRNA_10026-protein ID=mRNA_10026-protein|Name=jgi.p|Nanoce1779_2|633746|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MPRRSTSCPCWQSICLFFFLFCRNVIAAFVLPFSSSSSSSAINTCGRQAK
SYRASQPPAVLVKCNVQSTAAVGIDRGAWLRRPRCLAPLSAVSDPVEQQQ
LKEIPHGIARKQNTVPSSSPPFDCSPRLLLASGGFRDEARIQFLSDEIRN
FFGEGVSELLFIPFGAKDHVACMNTHETSGMAGGYKLRSIDNEKDPSAAI
KRSQGIYVCGGNVFRLLRELRRRGLLEDVREAVMEGGIPYLGISAGTVLA
CPTICTSNDMPIVDPGVAAGESLAAAASDIFSTTVASSPFSNPRPSSPSS
LPLPPSSFSALSALGLIDFQINAHFFGGEFYSQDPVTGKFQVHFGMNRVE
RIREFLEDVSDDAPVPVVGLAEGCMLKCEGGKIELLGESFSPPGSPMTIF
RKHFTPLEVKDVKGKDLAPLIRG* back to topmRNA from alignment at scaffold_42:78887..81111+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10026 ID=mRNA_10026|Name=jgi.p|Nanoce1779_2|633746|organism=Nannochloropsis oceanica|type=mRNA|length=2225bp|location=Sequence derived from alignment at scaffold_42:78887..81111+ (Nannochloropsis oceanica)
GATGCTCTTTGTACCTCCGCGTTACTAGGCTGTGGCAACTGCGTGTGAAA
TTAGAAGACATAACTGTCAGGCTGCCCACAAACTTCAGTGGTACGCATGA
TATCTCTGGTTTCACAAGCCGGTGGACATAGATCAGGATCGTGTGTGCGT
CAGGCGTTGGAAGAAGCCGTTGGCGATGAAGAACACAGCACACAAGTCGA
TCCCCATCCCATATACACACTCAACGCAGGGTAACGCAGCCGCATATACA
GTGGCTGCGGTAGAAGGAGAGTCTTTATGCCGAGACGGAGCACTTCTTGT
CCTTGCTGGCAGAGCATCTGCCTGTTCTTTTTCCTTTTTTGCAGAAACGT
CATCGCTGCCTTCGTCCTGCCTTTCTCCAGCAGCAGCAGCAGCAGCGCTA
TCAACACATGTGGCCGCCAAGCCAAATCTTACCGGGCATCGCAACCACCA
GCAGTATTAGTTAAATGCAATGTACAGTCAACGGCAGCAGTAGGAATTGA
TCGTGGGGCATGGTTAAGACGCCCACGATGTCTCGCTCCTCTATCTGCCG
TGTCGGACCCCGTGGAACAACAACAACTCAAGGAGATTCCGCATGGGGTA
AGTGCACTCAAAAAAATGGCTGTAAGAAGGGAGGAGAAAGGATGGATTTC
AGACATAGTGTCTGAACAGCAAAGCTCAGCTCTGCCTTAACAAAAACTGG
GAAAGGGATGATGTTGACTCTTTTCCTCCACTCATGCCTGCGCACAGTCA
TCTTTCACAACCACCCTCACTCTGTCACTAGTTACTTTCTCTGGAATGTA
CTGTGTCCTTGTTTGAAGCATAAGATTCTTGTCCATATACGCCGTCACCG
TCGACGCCAACCCATAGTATCTCTCATTCCTCTGCCTTCCCCTCTGTCCT
CCCCCTCCACAGATCGCCCGCAAGCAAAATACAGTGCCCTCCTCCTCCCC
TCCCTTCGATTGCTCTCCTCGCCTCCTCCTCGCTAGCGGAGGTTTTCGCG
ATGAAGCGCGCATTCAATTTCTATCTGACGAGATTCGGAATTTCTTCGGG
GAGGGCGTTTCGGAACTCCTCTTCATCCCCTTTGGCGCGAAAGACCATGT
TGCCTGCATGAATACGCACGAGACGTCGGGTATGGCAGGCGGGTACAAAT
TGAGGTCGATTGATAATGAAAAGGATCCTTCGGCAGCGATTAAGCGATCG
CAAGGTATGGCGGGAGGGAGGGCAGCTAGAGAAGATGATGGCATCGTCTC
TTCGGCACTCCAAGAGCTTCTATCGCCCAGCCATCGATCGCTCACGCTTC
CAACTCTACCCTTCCCCCTACCCCCCCAAGGCATTTATGTCTGCGGTGGG
AATGTCTTCCGCCTCCTCCGAGAGCTGCGCCGACGCGGGTTGCTCGAGGA
TGTGCGGGAGGCAGTGATGGAGGGAGGGATACCGTACCTGGGCATCTCGG
CGGGCACTGTCTTGGCCTGTCCCACGATCTGTACCAGCAACGACATGCCC
ATCGTCGATCCGGGTGTTGCAGCTGGAGAGTCTCTTGCTGCTGCTGCCTC
CGATATTTTTTCTACTACCGTTGCTTCTTCTCCTTTTTCCAATCCCCGTC
CTTCTTCTCCTTCTTCTCTTCCTCTTCCTCCTTCTTCTTTCTCTGCCCTT
AGCGCTCTGGGTCTGATCGATTTCCAAATCAACGCTCACTTTTTCGGTGG
TGAATTCTACAGCCAAGACCCAGTCACGGGCAAGTTCCAAGTCCACTTCG
GCATGAACCGCGTTGAACGCATCAGAGAATTCCTTGAAGACGTGAGCGAC
GACGCCCCTGTTCCAGTGGTGGGGCTGGCGGAAGGTTGTATGCTGAAATG
CGAGGGCGGGAAAATCGAATTGCTTGGGGAAAGTTTCAGTCCACCGGGGA
GTCCCATGACAATTTTTAGGAAGCACTTCACGCCATTGGAGGTGAAGGAC
GTTAAAGGCAAAGATCTAGCGCCCTTGATTCGAGGATAGTACGTGTATCT
AAAGCCTAAGAATTTGTTTTGTTTTCAGTCGAAAAGGTGAAGGGGTGGGA
GGTAGGGAGATAATGTGGGAGGGAGGAAAGAGGGCCTACTCTGACATGTG
TTCAAATCCATGAACGACAAACCCATCACTGTATGTATCTTAAAAGATGG
AGATTGACAAACGAATGGATAGTATATTAACAAAAAAAGAAATCGATCCC
GCCTGCCTCGTTTAATGGCTTGCGA back to topCoding sequence (CDS) from alignment at scaffold_42:78887..81111+ >mRNA_10026 ID=mRNA_10026|Name=jgi.p|Nanoce1779_2|633746|organism=Nannochloropsis oceanica|type=CDS|length=3816bp|location=Sequence derived from alignment at scaffold_42:78887..81111+ (Nannochloropsis oceanica)
ATGCCGAGACGGAGCACTTCTTGTCCTTGCTGGCAGAGCATCTGCCTGTT
CTTTTTCCTTTTTTGCAGAAACGTCATCGCTGCCTTCGTCCTGCCTTTCT
CCAGCAGCAGCAGCAGCAGCGCTATCAACACATGTGGCCGCCAAGCCAAA
TCTTACCGGGCATCGCAACCACCAGCAGTATTAGTTAAATGCAATGTACA
GTCAACGGCAGCAGTAGGAATTGATCGTGGGGCATGGTTAAGACGCCCAC
GATGTCTCGCTCCTCTATCTGCCGTGTCGGACCCCGTGGAACAACAACAA
CTCAAGGAGATTCCGCATGGGATCGCCCGCAAGCAAAATACAGTGCCCTC
CTCCTCCCCTCCCTTCGATTGCTCTCCTCGCCTCCTCCTCGCTAGCGGAG
GTTTTCGCGATGAAGCGCGCATTCAATTTCTATCTGACGAGATTCGGAAT
TTCTTCGGGGAGGGCGTTTCGGAACTCCTCTTCATCCCCTTTGGCGCGAA
AGACCATGTTGCCTGCATGAATACGCACGAGACGTCGGGTATGGCAGGCG
GGTACAAATTGAGGTCGATTGATAATGAAAAGGATCCTTCGGCAGCGATT
AAGCGATCGCAAGGCATTTATGTCTGCGGTGGGAATGTCTTCCGCCTCCT
CCGAGAGCTGCGCCGACGCGGGTTGCTCGAGGATGTGCGGGAGGCAGTGA
TGGAGGGAGGGATACCGTACCTGGGCATCTCGGCGGGCACTGTCTTGGCC
TGTCCCACGATCTGTACCAGCAACGACATGCCCATCGTCGATCCGGGTGT
TGCAGCTGGAGAGTCTCTTGCTGCTGCTGCCTCCGATATTTTTTCTACTA
CCGTTGCTTCTTCTCCTTTTTCCAATCCCCGTCCTTCTTCTCCTTCTTCT
CTTCCTCTTCCTCCTTCTTCTTTCTCTGCCCTTAGCGCTCTGGGTCTGAT
CGATTTCCAAATCAACGCTCACTTTTTCGGTGGTGAATTCTACAGCCAAG
ACCCAGTCACGGGCAAGTTCCAAGTCCACTTCGGCATGAACCGCGTTGAA
CGCATCAGAGAATTCCTTGAAGACGTGAGCGACGACGCCCCTGTTCCAGT
GGTGGGGCTGGCGGAAGGTTGTATGCTGAAATGCGAGGGCGGGAAAATCG
AATTGCTTGGGGAAAGTTTCAGTCCACCGGGGAGTCCCATGACAATTTTT
AGGAAGCACTTCACGCCATTGGAGGTGAAGGACGTTAAAGGCAAAGATCT
AGCGCCCTTGATTCGAGGATAGATGCCGAGACGGAGCACTTCTTGTCCTT
GCTGGCAGAGCATCTGCCTGTTCTTTTTCCTTTTTTGCAGAAACGTCATC
GCTGCCTTCGTCCTGCCTTTCTCCAGCAGCAGCAGCAGCAGCGCTATCAA
CACATGTGGCCGCCAAGCCAAATCTTACCGGGCATCGCAACCACCAGCAG
TATTAGTTAAATGCAATGTACAGTCAACGGCAGCAGTAGGAATTGATCGT
GGGGCATGGTTAAGACGCCCACGATGTCTCGCTCCTCTATCTGCCGTGTC
GGACCCCGTGGAACAACAACAACTCAAGGAGATTCCGCATGGGATCGCCC
GCAAGCAAAATACAGTGCCCTCCTCCTCCCCTCCCTTCGATTGCTCTCCT
CGCCTCCTCCTCGCTAGCGGAGGTTTTCGCGATGAAGCGCGCATTCAATT
TCTATCTGACGAGATTCGGAATTTCTTCGGGGAGGGCGTTTCGGAACTCC
TCTTCATCCCCTTTGGCGCGAAAGACCATGTTGCCTGCATGAATACGCAC
GAGACGTCGGGTATGGCAGGCGGGTACAAATTGAGGTCGATTGATAATGA
AAAGGATCCTTCGGCAGCGATTAAGCGATCGCAAGGCATTTATGTCTGCG
GTGGGAATGTCTTCCGCCTCCTCCGAGAGCTGCGCCGACGCGGGTTGCTC
GAGGATGTGCGGGAGGCAGTGATGGAGGGAGGGATACCGTACCTGGGCAT
CTCGGCGGGCACTGTCTTGGCCTGTCCCACGATCTGTACCAGCAACGACA
TGCCCATCGTCGATCCGGGTGTTGCAGCTGGAGAGTCTCTTGCTGCTGCT
GCCTCCGATATTTTTTCTACTACCGTTGCTTCTTCTCCTTTTTCCAATCC
CCGTCCTTCTTCTCCTTCTTCTCTTCCTCTTCCTCCTTCTTCTTTCTCTG
CCCTTAGCGCTCTGGGTCTGATCGATTTCCAAATCAACGCTCACTTTTTC
GGTGGTGAATTCTACAGCCAAGACCCAGTCACGGGCAAGTTCCAAGTCCA
CTTCGGCATGAACCGCGTTGAACGCATCAGAGAATTCCTTGAAGACGTGA
GCGACGACGCCCCTGTTCCAGTGGTGGGGCTGGCGGAAGGTTGTATGCTG
AAATGCGAGGGCGGGAAAATCGAATTGCTTGGGGAAAGTTTCAGTCCACC
GGGGAGTCCCATGACAATTTTTAGGAAGCACTTCACGCCATTGGAGGTGA
AGGACGTTAAAGGCAAAGATCTAGCGCCCTTGATTCGAGGATAGATGCCG
AGACGGAGCACTTCTTGTCCTTGCTGGCAGAGCATCTGCCTGTTCTTTTT
CCTTTTTTGCAGAAACGTCATCGCTGCCTTCGTCCTGCCTTTCTCCAGCA
GCAGCAGCAGCAGCGCTATCAACACATGTGGCCGCCAAGCCAAATCTTAC
CGGGCATCGCAACCACCAGCAGTATTAGTTAAATGCAATGTACAGTCAAC
GGCAGCAGTAGGAATTGATCGTGGGGCATGGTTAAGACGCCCACGATGTC
TCGCTCCTCTATCTGCCGTGTCGGACCCCGTGGAACAACAACAACTCAAG
GAGATTCCGCATGGGATCGCCCGCAAGCAAAATACAGTGCCCTCCTCCTC
CCCTCCCTTCGATTGCTCTCCTCGCCTCCTCCTCGCTAGCGGAGGTTTTC
GCGATGAAGCGCGCATTCAATTTCTATCTGACGAGATTCGGAATTTCTTC
GGGGAGGGCGTTTCGGAACTCCTCTTCATCCCCTTTGGCGCGAAAGACCA
TGTTGCCTGCATGAATACGCACGAGACGTCGGGTATGGCAGGCGGGTACA
AATTGAGGTCGATTGATAATGAAAAGGATCCTTCGGCAGCGATTAAGCGA
TCGCAAGGCATTTATGTCTGCGGTGGGAATGTCTTCCGCCTCCTCCGAGA
GCTGCGCCGACGCGGGTTGCTCGAGGATGTGCGGGAGGCAGTGATGGAGG
GAGGGATACCGTACCTGGGCATCTCGGCGGGCACTGTCTTGGCCTGTCCC
ACGATCTGTACCAGCAACGACATGCCCATCGTCGATCCGGGTGTTGCAGC
TGGAGAGTCTCTTGCTGCTGCTGCCTCCGATATTTTTTCTACTACCGTTG
CTTCTTCTCCTTTTTCCAATCCCCGTCCTTCTTCTCCTTCTTCTCTTCCT
CTTCCTCCTTCTTCTTTCTCTGCCCTTAGCGCTCTGGGTCTGATCGATTT
CCAAATCAACGCTCACTTTTTCGGTGGTGAATTCTACAGCCAAGACCCAG
TCACGGGCAAGTTCCAAGTCCACTTCGGCATGAACCGCGTTGAACGCATC
AGAGAATTCCTTGAAGACGTGAGCGACGACGCCCCTGTTCCAGTGGTGGG
GCTGGCGGAAGGTTGTATGCTGAAATGCGAGGGCGGGAAAATCGAATTGC
TTGGGGAAAGTTTCAGTCCACCGGGGAGTCCCATGACAATTTTTAGGAAG
CACTTCACGCCATTGGAGGTGAAGGACGTTAAAGGCAAAGATCTAGCGCC
CTTGATTCGAGGATAG back to top
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