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Properties
| Property Name | Value |
|---|
| TranscriptId | 533688 |
| Track | FilteredModels2 |
| ProteinId | 533602 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_42 | supercontig | scaffold_42:75343..77022 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10024 ID=mRNA_10024|Name=jgi.p|Nanoce1779_2|533602|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
ATGGCATCGACACAGCAAATAGCACGTGCTCCACCAGCTTCCCTACCTAC
CAAGGTCCGTCGCAACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCC
GTTTCAATGCCAAGGGCACGTATTGCATGACCGGCGGGCAAGACAAGACA
CTTAAGCTATGGAACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGG
AGAAGCCTTGTTGGTACAAAGCTACACCGGGCCGCATGGATACGAGGTGC
GCGACGTTGCCATCAGTAAAGACAATGCCCGTTTCGCCTCGTGTGGAGGG
GATAAGGTGTTTTTCCTGTGGGACGTGGCGACGGCGAGGGTGGTTCGGAA
ATTCACAGGCCATGCACATATGATCAATGCGGTGGCTTTCAATGAAGAAG
CGAGCGTGGTATTGAGTGCGTCCTACGACCGGACCGGTGGGTTGAGCGGA
GGAAGTCGAAGGCAGGATCCCTCCACATCCAAGTACGCAGTCACACCTTC
CACTCTTTCCCTCTTGCTTTCCCTACCTCCTCTCCTCCCCTCCCTTTCGG
CAGTCAAGATTTGGGACCTCCGGAGCAATAATCGCGACCCCATCCAAACT
CTCGACGACTTCAAAGACAGCGTCACCCGTGTCTGTGTGCTGGAGGAGGG
AGGGCGGGGAGGAGGACGAGGAGGGGGCGGTGGCGCGAGAGAAATCTTGG
CCACGTCGGTGGATGGGTGTCTGAGGACCTATGATTTGAGAAAAGGGATG
GTGAGGGTAGATGACTGCCAGGAGCCCTTGTCGTCGTTGTGTTTGTCGGG
GGACGGGCAGTGCGTGCTAATGAATGGGTTGGATGGGGTGGTGCGCTTGT
TGGAGAGGGGAACGGGGGAGATGCTGAATAGCTACCAAGGCCACGTCCAT
CAGGCTTATCCCATCGAGTCTTGCTTTGACCACACGGATGCGTTTGTTCT
CTCCGGCTCGGAGGACGGGTCGCTTTATATTTGGGACCTGGTGGAGGGAG
GGAGGGAGGGAGGGAAAGAGGGCAAGCCAGCGGCGGTCTTGCGAGAGCAT
AAGCGAGCGTTGGGTTCCTTGAGCTTTCATCCTTCAGAGCCCGTGTTGGT
GACAGTGGGATACGATGGAGTGGGATGTTGTTGGTTTCGGGATTTGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|533602 >mRNA_10024-protein ID=mRNA_10024-protein|Name=jgi.p|Nanoce1779_2|533602|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MASTQQIARAPPASLPTKVRRNLVGHKGPIFTVRFNAKGTYCMTGGQDKT
LKLWNPFRSSADTNKPGEALLVQSYTGPHGYEVRDVAISKDNARFASCGG
DKVFFLWDVATARVVRKFTGHAHMINAVAFNEEASVVLSASYDRTGGLSG
GSRRQDPSTSKYAVTPSTLSLLLSLPPLLPSLSAVKIWDLRSNNRDPIQT
LDDFKDSVTRVCVLEEGGRGGGRGGGGGAREILATSVDGCLRTYDLRKGM
VRVDDCQEPLSSLCLSGDGQCVLMNGLDGVVRLLERGTGEMLNSYQGHVH
QAYPIESCFDHTDAFVLSGSEDGSLYIWDLVEGGREGGKEGKPAAVLREH
KRALGSLSFHPSEPVLVTVGYDGVGCCWFRDL* back to topmRNA from alignment at scaffold_42:75343..77022- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10024 ID=mRNA_10024|Name=jgi.p|Nanoce1779_2|533602|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp|location=Sequence derived from alignment at scaffold_42:75343..77022- (Nannochloropsis oceanica)
ATGGCATCGACACAGCAAATAGCACGTGCTCCACCAGCTTCCCTACCTAC
CAAGGTCCGTCGCAACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCC
GTTTCAATGGTAAGGCCCTCATCATCCCACGGGCGATTGCCCATCCCCTT
CTTCTTCCTCTTTCTTCGCAAGCATTAAAAAGGCTAGGGCGAAACTTGCG
AGGAAAGGGGGGATGATCTGAAAGGATTTTTTCATTAGCGAATCCATTAA
GTCTCAATACCGCGGTGCTCGCCATCCATTTCCATCCACCCCTCACTCTT
CGCTTCTCCCGTTCCCCCCGACCCCACATTGGACGCATAGCCAAGGGCAC
GTATTGCATGACCGGCGGGCAAGACAAGACACTTAAGCTATGGAACCCTT
TTCGCTCAAGCGCCGATACAAATAAGCCAGGTAAGGGACAATGGAGCACA
TGAGTGGCGGATGGATGTGGGGTTTTGAGTCCTTTCCTGTAGGACACGCA
ATTCCAAACCCTCCTACCCTCTTTCTTACTCCCTCCCCCCCTCTTCAAAG
GAGAAGCCTTGTTGGTACAAAGCTACACCGGGCCGCATGGATACGAGGTG
CGCGACGTTGCCATCAGTAAAGACAATGCCCGTTTCGCCTCGTGTGGAGG
GGATAAGGTGTTTTTCCTGTGGGACGTGGCGACGGCGAGGGTGGTTCGGA
AATTCACAGGCCATGCACATATGATCAATGCGGTGGCTTTCAATGAAGAA
GCGAGCGTGGTATTGAGTGCGTCCTACGACCGGACCGGTGGGTTGAGCGG
AGGAAGTCGAAGGCAGGATCCCTCGTTTAAATGTTAAAATACGAGCACAT
CCAAGTACGCAGTCACACCTTCCACTCTTTCCCTCTTGCTTTCCCTACCT
CCTCTCCTCCCCTCCCTTTCGGCAGTCAAGATTTGGGACCTCCGGAGCAA
TAATCGCGACCCCATCCAAACTCTCGACGACTTCAAAGACAGCGTCACCC
GTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAGGACGAGGAGGGGGC
GGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGATGGGTGTCTGAGGAC
CTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGACTGCCAGGAGCCCT
TGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCGTGCTAATGAATGGG
TTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACGGGGGAGATGCTGAA
TAGCTACCAAGGGTAAGAATGACAGGAGGGATGGAGGGGGGGGTTATGAC
GCATTCATCGGCTTCAGTGATGATGCGGAGTTTGCTTGGTCATTACCGTT
CGACAATACCAACGTTTTGATCCTCTCTCTCACTTACACCCGTCCCTCTC
TTCGTCCCTCACTCCCCTTAGCCACGTCCATCAGGCTTATCCCATCGAGT
CTTGCTTTGACCACACGGATGCGTTTGTTCTCTCCGGCTCGGAGGACGGG
TCGCTTTATATTTGGGACCTGGTGGAGGGAGGGAGGGAGGGAGGGAAAGA
GGGCAAGCCAGCGGCGGTCTTGCGAGAGCATAAGCGAGCGTTGGGTTCCT
TGAGCTTTCATCCTTCAGAGCCCGTGTTGGTGACAGTGGGATACGATGGA
GTGGGATGTTGTTGGTTTCGGGATTTGTGA back to topCoding sequence (CDS) from alignment at scaffold_42:75343..77022- >mRNA_10024 ID=mRNA_10024|Name=jgi.p|Nanoce1779_2|533602|organism=Nannochloropsis oceanica|type=CDS|length=5745bp|location=Sequence derived from alignment at scaffold_42:75343..77022- (Nannochloropsis oceanica)
CCACGTCCATCAGGCTTATCCCATCGAGTCTTGCTTTGACCACACGGATG
CGTTTGTTCTCTCCGGCTCGGAGGACGGGTCGCTTTATATTTGGGACCTG
GTGGAGGGAGGGAGGGAGGGAGGGAAAGAGGGCAAGCCAGCGGCGGTCTT
GCGAGAGCATAAGCGAGCGTTGGGTTCCTTGAGCTTTCATCCTTCAGAGC
CCGTGTTGGTGACAGTGGGATACGATGGAGTGGGATGTTGTTGGTTTCGG
GATTTGTGACACATCCAAGTACGCAGTCACACCTTCCACTCTTTCCCTCT
TGCTTTCCCTACCTCCTCTCCTCCCCTCCCTTTCGGCAGTCAAGATTTGG
GACCTCCGGAGCAATAATCGCGACCCCATCCAAACTCTCGACGACTTCAA
AGACAGCGTCACCCGTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAG
GACGAGGAGGGGGCGGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGAT
GGGTGTCTGAGGACCTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGA
CTGCCAGGAGCCCTTGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCG
TGCTAATGAATGGGTTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACG
GGGGAGATGCTGAATAGCTACCAAGGGAGAAGCCTTGTTGGTACAAAGCT
ACACCGGGCCGCATGGATACGAGGTGCGCGACGTTGCCATCAGTAAAGAC
AATGCCCGTTTCGCCTCGTGTGGAGGGGATAAGGTGTTTTTCCTGTGGGA
CGTGGCGACGGCGAGGGTGGTTCGGAAATTCACAGGCCATGCACATATGA
TCAATGCGGTGGCTTTCAATGAAGAAGCGAGCGTGGTATTGAGTGCGTCC
TACGACCGGACCGGTGGGTTGAGCGGAGGAAGTCGAAGGCAGGATCCCTC
CCAAGGGCACGTATTGCATGACCGGCGGGCAAGACAAGACACTTAAGCTA
TGGAACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGATGGCATCGA
CACAGCAAATAGCACGTGCTCCACCAGCTTCCCTACCTACCAAGGTCCGT
CGCAACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCCGTTTCAATGC
CACGTCCATCAGGCTTATCCCATCGAGTCTTGCTTTGACCACACGGATGC
GTTTGTTCTCTCCGGCTCGGAGGACGGGTCGCTTTATATTTGGGACCTGG
TGGAGGGAGGGAGGGAGGGAGGGAAAGAGGGCAAGCCAGCGGCGGTCTTG
CGAGAGCATAAGCGAGCGTTGGGTTCCTTGAGCTTTCATCCTTCAGAGCC
CGTGTTGGTGACAGTGGGATACGATGGAGTGGGATGTTGTTGGTTTCGGG
ATTTGTGACACATCCAAGTACGCAGTCACACCTTCCACTCTTTCCCTCTT
GCTTTCCCTACCTCCTCTCCTCCCCTCCCTTTCGGCAGTCAAGATTTGGG
ACCTCCGGAGCAATAATCGCGACCCCATCCAAACTCTCGACGACTTCAAA
GACAGCGTCACCCGTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAGG
ACGAGGAGGGGGCGGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGATG
GGTGTCTGAGGACCTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGAC
TGCCAGGAGCCCTTGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCGT
GCTAATGAATGGGTTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACGG
GGGAGATGCTGAATAGCTACCAAGGGAGAAGCCTTGTTGGTACAAAGCTA
CACCGGGCCGCATGGATACGAGGTGCGCGACGTTGCCATCAGTAAAGACA
ATGCCCGTTTCGCCTCGTGTGGAGGGGATAAGGTGTTTTTCCTGTGGGAC
GTGGCGACGGCGAGGGTGGTTCGGAAATTCACAGGCCATGCACATATGAT
CAATGCGGTGGCTTTCAATGAAGAAGCGAGCGTGGTATTGAGTGCGTCCT
ACGACCGGACCGGTGGGTTGAGCGGAGGAAGTCGAAGGCAGGATCCCTCC
CAAGGGCACGTATTGCATGACCGGCGGGCAAGACAAGACACTTAAGCTAT
GGAACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGATGGCATCGAC
ACAGCAAATAGCACGTGCTCCACCAGCTTCCCTACCTACCAAGGTCCGTC
GCAACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCCGTTTCAATGCC
ACGTCCATCAGGCTTATCCCATCGAGTCTTGCTTTGACCACACGGATGCG
TTTGTTCTCTCCGGCTCGGAGGACGGGTCGCTTTATATTTGGGACCTGGT
GGAGGGAGGGAGGGAGGGAGGGAAAGAGGGCAAGCCAGCGGCGGTCTTGC
GAGAGCATAAGCGAGCGTTGGGTTCCTTGAGCTTTCATCCTTCAGAGCCC
GTGTTGGTGACAGTGGGATACGATGGAGTGGGATGTTGTTGGTTTCGGGA
TTTGTGACACATCCAAGTACGCAGTCACACCTTCCACTCTTTCCCTCTTG
CTTTCCCTACCTCCTCTCCTCCCCTCCCTTTCGGCAGTCAAGATTTGGGA
CCTCCGGAGCAATAATCGCGACCCCATCCAAACTCTCGACGACTTCAAAG
ACAGCGTCACCCGTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAGGA
CGAGGAGGGGGCGGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGATGG
GTGTCTGAGGACCTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGACT
GCCAGGAGCCCTTGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCGTG
CTAATGAATGGGTTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACGGG
GGAGATGCTGAATAGCTACCAAGGGAGAAGCCTTGTTGGTACAAAGCTAC
ACCGGGCCGCATGGATACGAGGTGCGCGACGTTGCCATCAGTAAAGACAA
TGCCCGTTTCGCCTCGTGTGGAGGGGATAAGGTGTTTTTCCTGTGGGACG
TGGCGACGGCGAGGGTGGTTCGGAAATTCACAGGCCATGCACATATGATC
AATGCGGTGGCTTTCAATGAAGAAGCGAGCGTGGTATTGAGTGCGTCCTA
CGACCGGACCGGTGGGTTGAGCGGAGGAAGTCGAAGGCAGGATCCCTCCC
AAGGGCACGTATTGCATGACCGGCGGGCAAGACAAGACACTTAAGCTATG
GAACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGATGGCATCGACA
CAGCAAATAGCACGTGCTCCACCAGCTTCCCTACCTACCAAGGTCCGTCG
CAACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCCGTTTCAATGCCA
CGTCCATCAGGCTTATCCCATCGAGTCTTGCTTTGACCACACGGATGCGT
TTGTTCTCTCCGGCTCGGAGGACGGGTCGCTTTATATTTGGGACCTGGTG
GAGGGAGGGAGGGAGGGAGGGAAAGAGGGCAAGCCAGCGGCGGTCTTGCG
AGAGCATAAGCGAGCGTTGGGTTCCTTGAGCTTTCATCCTTCAGAGCCCG
TGTTGGTGACAGTGGGATACGATGGAGTGGGATGTTGTTGGTTTCGGGAT
TTGTGACACATCCAAGTACGCAGTCACACCTTCCACTCTTTCCCTCTTGC
TTTCCCTACCTCCTCTCCTCCCCTCCCTTTCGGCAGTCAAGATTTGGGAC
CTCCGGAGCAATAATCGCGACCCCATCCAAACTCTCGACGACTTCAAAGA
CAGCGTCACCCGTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAGGAC
GAGGAGGGGGCGGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGATGGG
TGTCTGAGGACCTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGACTG
CCAGGAGCCCTTGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCGTGC
TAATGAATGGGTTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACGGGG
GAGATGCTGAATAGCTACCAAGGGAGAAGCCTTGTTGGTACAAAGCTACA
CCGGGCCGCATGGATACGAGGTGCGCGACGTTGCCATCAGTAAAGACAAT
GCCCGTTTCGCCTCGTGTGGAGGGGATAAGGTGTTTTTCCTGTGGGACGT
GGCGACGGCGAGGGTGGTTCGGAAATTCACAGGCCATGCACATATGATCA
ATGCGGTGGCTTTCAATGAAGAAGCGAGCGTGGTATTGAGTGCGTCCTAC
GACCGGACCGGTGGGTTGAGCGGAGGAAGTCGAAGGCAGGATCCCTCCCA
AGGGCACGTATTGCATGACCGGCGGGCAAGACAAGACACTTAAGCTATGG
AACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGATGGCATCGACAC
AGCAAATAGCACGTGCTCCACCAGCTTCCCTACCTACCAAGGTCCGTCGC
AACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCCGTTTCAATGCCAC
GTCCATCAGGCTTATCCCATCGAGTCTTGCTTTGACCACACGGATGCGTT
TGTTCTCTCCGGCTCGGAGGACGGGTCGCTTTATATTTGGGACCTGGTGG
AGGGAGGGAGGGAGGGAGGGAAAGAGGGCAAGCCAGCGGCGGTCTTGCGA
GAGCATAAGCGAGCGTTGGGTTCCTTGAGCTTTCATCCTTCAGAGCCCGT
GTTGGTGACAGTGGGATACGATGGAGTGGGATGTTGTTGGTTTCGGGATT
TGTGACACATCCAAGTACGCAGTCACACCTTCCACTCTTTCCCTCTTGCT
TTCCCTACCTCCTCTCCTCCCCTCCCTTTCGGCAGTCAAGATTTGGGACC
TCCGGAGCAATAATCGCGACCCCATCCAAACTCTCGACGACTTCAAAGAC
AGCGTCACCCGTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAGGACG
AGGAGGGGGCGGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGATGGGT
GTCTGAGGACCTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGACTGC
CAGGAGCCCTTGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCGTGCT
AATGAATGGGTTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACGGGGG
AGATGCTGAATAGCTACCAAGGGAGAAGCCTTGTTGGTACAAAGCTACAC
CGGGCCGCATGGATACGAGGTGCGCGACGTTGCCATCAGTAAAGACAATG
CCCGTTTCGCCTCGTGTGGAGGGGATAAGGTGTTTTTCCTGTGGGACGTG
GCGACGGCGAGGGTGGTTCGGAAATTCACAGGCCATGCACATATGATCAA
TGCGGTGGCTTTCAATGAAGAAGCGAGCGTGGTATTGAGTGCGTCCTACG
ACCGGACCGGTGGGTTGAGCGGAGGAAGTCGAAGGCAGGATCCCTCCCAA
GGGCACGTATTGCATGACCGGCGGGCAAGACAAGACACTTAAGCTATGGA
ACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGATGGCATCGACACA
GCAAATAGCACGTGCTCCACCAGCTTCCCTACCTACCAAGGTCCGTCGCA
ACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCCGTTTCAATG back to top
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