jgi.p|Nanoce1779_2|608590, mRNA_10023 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608590
Unique NamemRNA_10023
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1819
Alignment locationscaffold_42:72896..74839 -

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Properties
Property NameValue
TranscriptId608676
TrackFilteredModels2
ProteinId608590
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:72896..74839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608590gene_10023Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608590mRNA_10023-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10023CDS_10023Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10023 ID=mRNA_10023|Name=jgi.p|Nanoce1779_2|608590|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp
TGTAAACCTCACACAGACCTTCACTCTGCGCCTTTCATTAGCCCAAGCTC
AAGCGCACGTGCGTCAGCGGGGTACGACCTCGGCATGAAGCTCTCGATTC
TCCTCCTCGTTACCGTCCTGGCTGGCAGCGTCTCGGCGTCGGTGGCAGGA
CCCAAGGCCAGCACCACCACACCCCTCCCTAATAACGGCGACAGGCTTCT
TGCCGGGCGTCGAGGTGGGTTCAAGCTCCCTACCAAGGCCGCTTCTTCCC
CTGTCAAGGGGCCTGCGGCTCAAACCAAGACCAAAGACGTCGCCCCAATT
GAGTGGGGAGGTGTCTCCACCGTCCTAGGTGGTGCCCTGGCGCACCTGGC
CCTCGGCACCCTCTACTGCTGGGGTAATTTCCAGTCCTACGTCCCCAAGC
ATCTTCTGTTCTTCGACGGAAAGATCAAGTCAGGGCAGCCTGATGCTGCT
CTTGTGTTTCCCTTGACCATTGCTTCGCAAGTGCTGGGGCTGCCCCTTGG
TCCGATTTTTCAACGCAAAATTGGGGAGCGCAATGCCTTGCTGCTCGGGT
GCTTGTTGATGGCCGCGGGCGTGTTTTTGTCGTCGTTTGCGACGAACTTG
TCGATGTTCATGGTCTTTTACTCGCTCTTCTTCGGGGTGGGCGTGGGTAT
TGCTTACACTGCTCCTATCGTGGCAGGGTGGAAGTGGTTCCCTAACAGCA
AGGGCCTTGTGTCGGGCGCTGTACTGACGGGCTTTGGCGCCGGTGGCTTC
TTCTTCAACCTTCTGGGGACAAAGCTTATCAACCCGAACAACGAGAAGCC
CGTCAGGGGCGCCTTTTCTCCGGCGCTCACAGCGGGATTCGGCCCGCTCT
TGCGCAAGCTCTCTGCGTTCTATGTCGTGCTGGCTGTCGTAGGGTCCCTC
TTGGTCTCCACCCCTAAGGCCATAACTGGCAAGAGCAGTAGCAAGGCCAA
GACTGCCGTAGCTGCAGGTCCCGACTACACACCGGGCCAGGCCTTAATCT
CGCTGCAGTTCTGGTGGATCTGGGTGATCATTTTCTTAATGTCAACCGGG
TCGTTGGCGACAGCGGGGGTGAACAAGGCGTTCGGCGTAACTTTTCCCGA
GCTTCGTTCCGACTCGTACCTGTCGATGGTCCTGGCGTTGTCTGCGCTCT
TCAACGGTGGGGGCCGACTGTTCTGGGGGAGCATGTCGGATAAGTACGGC
TTCAAGAATGCTTTTATGGCCATGGCGGGGGTGCAAGCCGTGACTCTGGG
GATCTATGATAAGCTGGCCGCGTCTAAGCTAACATTCGCGCTCGGGACCA
TGTCGGTGTACTTTACCTTGGGGGGGGCCTTCGCCATGTTCCCGCCGGCG
ATCCAGAAGAGGTTTGGAGCGCGGAACGGGGTGACGATCTATTCGTACAT
CTTCACGGCATTCGCAGTGGCGTCGATCGGAGGCAGCATTTTGGCGAAGC
GCTTGGTGGCGTACTTTGGTGGGTATGAGAATGTATTCAAGCTGTTCAGT
GCTTCCTCGTTGGGGGCATTAGGGCTGGCGGCGCTGTTGCCGGAGAACTG
AAGCGGGATTCCAGGGTGAAGGCCTCAGGGGAATGATTGATCTTCGAAAT
GGTCAACATATGTGTGTTTGTGTGATTTATTTGATTTGTGTCATGCACGA
GAAAAAGTGTAATGCGAGTTCAAGGGAAGTTGGGGTTTCACAAAAGAAAA
AGATGGAGTATTGTTTATTTGGATTACAGATGCCTTGCATTTAACGCCCG
TGCCTTGAGTTGGAACGAGAGTAAAATGGGGAAATTCTAAATGAACAATA
AGATGCTGTTGCTGCGGTG
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protein sequence of jgi.p|Nanoce1779_2|608590

>mRNA_10023-protein ID=mRNA_10023-protein|Name=jgi.p|Nanoce1779_2|608590|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MKLSILLLVTVLAGSVSASVAGPKASTTTPLPNNGDRLLAGRRGGFKLPT
KAASSPVKGPAAQTKTKDVAPIEWGGVSTVLGGALAHLALGTLYCWGNFQ
SYVPKHLLFFDGKIKSGQPDAALVFPLTIASQVLGLPLGPIFQRKIGERN
ALLLGCLLMAAGVFLSSFATNLSMFMVFYSLFFGVGVGIAYTAPIVAGWK
WFPNSKGLVSGAVLTGFGAGGFFFNLLGTKLINPNNEKPVRGAFSPALTA
GFGPLLRKLSAFYVVLAVVGSLLVSTPKAITGKSSSKAKTAVAAGPDYTP
GQALISLQFWWIWVIIFLMSTGSLATAGVNKAFGVTFPELRSDSYLSMVL
ALSALFNGGGRLFWGSMSDKYGFKNAFMAMAGVQAVTLGIYDKLAASKLT
FALGTMSVYFTLGGAFAMFPPAIQKRFGARNGVTIYSYIFTAFAVASIGG
SILAKRLVAYFGGYENVFKLFSASSLGALGLAALLPEN*
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mRNA from alignment at scaffold_42:72896..74839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10023 ID=mRNA_10023|Name=jgi.p|Nanoce1779_2|608590|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at scaffold_42:72896..74839- (Nannochloropsis oceanica)
TGTAAACCTCACACAGACCTTCACTCTGCGCCTTTCATTAGCCCAAGCTC
AAGCGCACGTGCGTCAGCGGGGTACGACGTAAGACCTCTCGCCTACGACC
TCCCCAAATCAAATCATTTACGACTTCTTTCTGTCGAAACCTACCGCATC
TCACTCCCTCCGTCAACATTCTCGCCTTCCCGCACTGGCTCTATACCCTA
CAGCTCGGCATGAAGCTCTCGATTCTCCTCCTCGTTACCGTCCTGGCTGG
CAGCGTCTCGGCGTCGGTGGCAGGACCCAAGGCCAGCACCACCACACCCC
TCCCTAATAACGGCGACAGGCTTCTTGCCGGGCGTCGAGGTGGGTTCAAG
CTCCCTACCAAGGCCGCTTCTTCCCCTGTCAAGGGGCCTGCGGCTCAAAC
CAAGACCAAAGACGTCGCCCCAATTGAGTGGGGAGGTGTCTCCACCGTCC
TAGGTGGTGCCCTGGCGCACCTGGCCCTCGGCACCCTCTACTGCTGGGGT
AATTTCCAGTCCTACGTCCCCAAGCATCTTCTGTTCTTCGACGGAAAGAT
CAAGTCAGGGCAGCCTGATGCTGCTCTTGTGTTTCCCTTGACCATTGCTT
CGCAAGTGCTGGGGCTGCCCCTTGGTCCGATTTTTCAACGCAAAATTGGG
GAGCGCAATGCCTTGCTGCTCGGGTGCTTGTTGATGGCCGCGGGCGTGTT
TTTGTCGTCGTTTGCGACGAACTTGTCGATGTTCATGGTCTTTTACTCGC
TCTTCTTCGGGGTGGGCGTGGGTATTGCTTACACTGCTCCTATCGTGGCA
GGGTGGAAGTGGTTCCCTAACAGCAAGGGCCTTGTGTCGGGCGCTGTACT
GACGGGCTTTGGCGCCGGTGGCTTCTTCTTCAACCTTCTGGGGACAAAGC
TTATCAACCCGAACAACGAGAAGCCCGTCAGGGGCGCCTTTTCTCCGGCG
CTCACAGCGGGATTCGGCCCGCTCTTGCGCAAGCTCTCTGCGTTCTATGT
CGTGCTGGCTGTCGTAGGGTCCCTCTTGGTCTCCACCCCTAAGGCCATAA
CTGGCAAGAGCAGTAGCAAGGCCAAGACTGCCGTAGCTGCAGGTCCCGAC
TACACACCGGGCCAGGCCTTAATCTCGCTGCAGTTCTGGTGGATCTGGGT
GATCATTTTCTTAATGTCAACCGGGTCGTTGGCGACAGCGGGGGTGAACA
AGGCGTTCGGCGTAACTTTTCCCGAGCTTCGTTCCGACTCGTACCTGTCG
ATGGTCCTGGCGTTGTCTGCGCTCTTCAACGGTGGGGGCCGACTGTTCTG
GGGGAGCATGTCGGATAAGTACGGCTTCAAGAATGCTTTTATGGCCATGG
CGGGGGTGCAAGCCGTGACTCTGGGGATCTATGATAAGCTGGCCGCGTCT
AAGCTAACATTCGCGCTCGGGACCATGTCGGTGTACTTTACCTTGGGGGG
GGCCTTCGCCATGTTCCCGCCGGCGATCCAGAAGAGGTTTGGAGCGCGGA
ACGGGGTGACGATCTATTCGTACATCTTCACGGCATTCGCAGTGGCGTCG
ATCGGAGGCAGCATTTTGGCGAAGCGCTTGGTGGCGTACTTTGGTGGGTA
TGAGAATGTATTCAAGCTGTTCAGTGCTTCCTCGTTGGGGGCATTAGGGC
TGGCGGCGCTGTTGCCGGAGAACTGAAGCGGGATTCCAGGGTGAAGGCCT
CAGGGGAATGATTGATCTTCGAAATGGTCAACATATGTGTGTTTGTGTGA
TTTATTTGATTTGTGTCATGCACGAGAAAAAGTGTAATGCGAGTTCAAGG
GAAGTTGGGGTTTCACAAAAGAAAAAGATGGAGTATTGTTTATTTGGATT
ACAGATGCCTTGCATTTAACGCCCGTGCCTTGAGTTGGAACGAGAGTAAA
ATGGGGAAATTCTAAATGAACAATAAGATGCTGTTGCTGCGGTG
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Coding sequence (CDS) from alignment at scaffold_42:72896..74839-

>mRNA_10023 ID=mRNA_10023|Name=jgi.p|Nanoce1779_2|608590|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_42:72896..74839- (Nannochloropsis oceanica)
ATGAAGCTCTCGATTCTCCTCCTCGTTACCGTCCTGGCTGGCAGCGTCTC
GGCGTCGGTGGCAGGACCCAAGGCCAGCACCACCACACCCCTCCCTAATA
ACGGCGACAGGCTTCTTGCCGGGCGTCGAGGTGGGTTCAAGCTCCCTACC
AAGGCCGCTTCTTCCCCTGTCAAGGGGCCTGCGGCTCAAACCAAGACCAA
AGACGTCGCCCCAATTGAGTGGGGAGGTGTCTCCACCGTCCTAGGTGGTG
CCCTGGCGCACCTGGCCCTCGGCACCCTCTACTGCTGGGGTAATTTCCAG
TCCTACGTCCCCAAGCATCTTCTGTTCTTCGACGGAAAGATCAAGTCAGG
GCAGCCTGATGCTGCTCTTGTGTTTCCCTTGACCATTGCTTCGCAAGTGC
TGGGGCTGCCCCTTGGTCCGATTTTTCAACGCAAAATTGGGGAGCGCAAT
GCCTTGCTGCTCGGGTGCTTGTTGATGGCCGCGGGCGTGTTTTTGTCGTC
GTTTGCGACGAACTTGTCGATGTTCATGGTCTTTTACTCGCTCTTCTTCG
GGGTGGGCGTGGGTATTGCTTACACTGCTCCTATCGTGGCAGGGTGGAAG
TGGTTCCCTAACAGCAAGGGCCTTGTGTCGGGCGCTGTACTGACGGGCTT
TGGCGCCGGTGGCTTCTTCTTCAACCTTCTGGGGACAAAGCTTATCAACC
CGAACAACGAGAAGCCCGTCAGGGGCGCCTTTTCTCCGGCGCTCACAGCG
GGATTCGGCCCGCTCTTGCGCAAGCTCTCTGCGTTCTATGTCGTGCTGGC
TGTCGTAGGGTCCCTCTTGGTCTCCACCCCTAAGGCCATAACTGGCAAGA
GCAGTAGCAAGGCCAAGACTGCCGTAGCTGCAGGTCCCGACTACACACCG
GGCCAGGCCTTAATCTCGCTGCAGTTCTGGTGGATCTGGGTGATCATTTT
CTTAATGTCAACCGGGTCGTTGGCGACAGCGGGGGTGAACAAGGCGTTCG
GCGTAACTTTTCCCGAGCTTCGTTCCGACTCGTACCTGTCGATGGTCCTG
GCGTTGTCTGCGCTCTTCAACGGTGGGGGCCGACTGTTCTGGGGGAGCAT
GTCGGATAAGTACGGCTTCAAGAATGCTTTTATGGCCATGGCGGGGGTGC
AAGCCGTGACTCTGGGGATCTATGATAAGCTGGCCGCGTCTAAGCTAACA
TTCGCGCTCGGGACCATGTCGGTGTACTTTACCTTGGGGGGGGCCTTCGC
CATGTTCCCGCCGGCGATCCAGAAGAGGTTTGGAGCGCGGAACGGGGTGA
CGATCTATTCGTACATCTTCACGGCATTCGCAGTGGCGTCGATCGGAGGC
AGCATTTTGGCGAAGCGCTTGGTGGCGTACTTTGGTGGGTATGAGAATGT
ATTCAAGCTGTTCAGTGCTTCCTCGTTGGGGGCATTAGGGCTGGCGGCGC
TGTTGCCGGAGAACTGA
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Synonyms
Publications