jgi.p|Nanoce1779_2|574992, mRNA_1002 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574992
Unique Name	mRNA_1002
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1730
Alignment location	scaffold_2:987466..989440 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575078
Track	FilteredModels2
ProteinId	574992

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:987466..989440 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574992	gene_1002	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574992	mRNA_1002-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1002	CDS_1002	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:987466..989440-
coding sequence from alignment at scaffold_2:987466..989440-

mRNA sequence

>mRNA_1002 ID=mRNA_1002|Name=jgi.p|Nanoce1779_2|574992|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp
ACAGGTCTTCCTGCTGTCCTACGCGGCAATGCTTGCGCCGCCTTGCCTGC
TACAGCCGTTGCTACTTATCTTGAGCTGTGCGTCATTTGCTGTTCAAGGG
TTTGTGCCGCACCCGCCCACGTGTTCTCCCATCCCTACCCTACGCAAATC
TAAGCACTTCACCTCGTCCTCACTGATCAAACGCGAATCCTCCCTCGGCG
GCATGTTCTCGCAAATGTTGGGAGGGATGCTCAAGGGCCCGGCTCCACCT
CCAGCGGACATGGAAGCATTCAAAGACCCGGCACCTAGCTGGACAGAGCT
ACAGGCACTATTGATCGAGAAGCAGACTGTGGAGGAGCGGGCCTTGCCTG
ATCTGCGCGCGAAGGGCCGCGGCCCCCCCTCTAGCAAGGCATCACTGCGT
TTGTTTGAAGCGCCGGACGGGCACGAACCGCGCGTGGTGCTTTATAGGGA
TACGGCTGCTTGGTGCCCGTATTGCCAGAAGGTGTGGATGTATTTAGAGG
AAAAGCGCATTCCCTATCAAGTCAGAAAAGTACCCATGCGGTGCTACGGT
CAAAAACCCGCCTGGTTTTCACGTCTGTCTGCCTCGGGTCTCTTGCCAGT
CATGGAGCTCGATGGCGACATCGTCATTGAATCAGATGTGATCATCCAAA
CACTCGAAGATCGCTTCCCAGACGCCATCCCCCTCCTCCCTCTCGCCTCG
GACCCCGACGCAGCCTTAGTCTCGCCTTTACTCAGGCTTGAACGAGAGTT
GTTCAGTGGTTGGTTGCGGTGGTTGACAGGGAGCACCACCACAAATGAGA
GGAGTAAGATGATCTTCGAGGGAGTGTTAGGGAAGGTAGAAACAGCATTG
GCCGCAAAGGGCGGGCCGTATTTCTTGGGCGAGACATTTTCATTGATTGA
TTGCATTTTTGCCCCGTTCATGGAGAGGATGGCAGGAACCCTGTGCTATT
ACAAGGGGTTTGAGATGCGCAATAATGCGAAATACGTAGGAGTGGAACGG
TGGTTCCGGGCGATGGAAAGCAGGGAGAGCTTCGCGAACATCAAGAGTGA
CTGGTACACTCATGCAATGGACATGCCCCCCCAGGTCGGCTCTTGCTCCT
CCATCCCCGAAGCTATCCCTTATGCCGCAGAGCTCTCTGGAAGGGATGGA
GTTTCCTGGACCTTGCCACTCAAACAAAACGGGGTGGAACCTCTCCTCCC
CTCCTTCGAGGAAGGTGCCGCCAGGCGAGAAGCAGTGGCACAGCTGCTGG
CGAATGCCGAGGCAGTTGTTAAGTTTGCTGCACGTGGCTTGGGCGAACCG
GGCGTTCCCCCCGTGACGGCTGATTTGGCCGACCCGAACGCGAAACCAAA
TGAAGCTTATGTGCCTTTACTTGATGCTGCTTTGCGAGGGGTGGCTCATT
CAATGTTGGTAGGGAGGGAGGGCATGTCGATGCCGCCTGGGGAGGGTTTT
GTGGCAGGGGAGGCAGTTGCACAGGGGTTGGATTACCTAAGGGCAAGAGT
AGGGGTACCGAGGGACATGTCATATGAGGCGGCGAGAATGTTCAGGGGTC
ACTTGGGCTGGTATGCGGAAGAGTTGAGGAAGGTATGTCAGGCTTAGGAG
GGGTTTTTGGGAGAAATCTTTCAGTCAGGGAGGGTTTCGATTGTACGGAG
CGAGGTGAATGAGTTTCCAAAAAAAGAAAATCAGGAAGGAAAGTGTGTCG
CGCGAAACCCTTAGTTGCCGTAAGCAGCCA

protein sequence of jgi.p|Nanoce1779_2|574992

>mRNA_1002-protein ID=mRNA_1002-protein|Name=jgi.p|Nanoce1779_2|574992|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MLAPPCLLQPLLLILSCASFAVQGFVPHPPTCSPIPTLRKSKHFTSSSLI
KRESSLGGMFSQMLGGMLKGPAPPPADMEAFKDPAPSWTELQALLIEKQT
VEERALPDLRAKGRGPPSSKASLRLFEAPDGHEPRVVLYRDTAAWCPYCQ
KVWMYLEEKRIPYQVRKVPMRCYGQKPAWFSRLSASGLLPVMELDGDIVI
ESDVIIQTLEDRFPDAIPLLPLASDPDAALVSPLLRLERELFSGWLRWLT
GSTTTNERSKMIFEGVLGKVETALAAKGGPYFLGETFSLIDCIFAPFMER
MAGTLCYYKGFEMRNNAKYVGVERWFRAMESRESFANIKSDWYTHAMDMP
PQVGSCSSIPEAIPYAAELSGRDGVSWTLPLKQNGVEPLLPSFEEGAARR
EAVAQLLANAEAVVKFAARGLGEPGVPPVTADLADPNAKPNEAYVPLLDA
ALRGVAHSMLVGREGMSMPPGEGFVAGEAVAQGLDYLRARVGVPRDMSYE
AARMFRGHLGWYAEELRKVCQA*

mRNA from alignment at scaffold_2:987466..989440-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1002 ID=mRNA_1002|Name=jgi.p|Nanoce1779_2|574992|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp|location=Sequence derived from alignment at scaffold_2:987466..989440- (Nannochloropsis oceanica)
ACAGGTCTTCCTGCTGTCCTACGCGGCAATGCTTGCGCCGCCTTGCCTGC
TACAGCCGTTGCTACTTATCTTGAGCTGTGCGTCATTTGCTGTTCAAGGG
TTTGTGCCGCACCCGCCCACGTGTTCTCCCATCCCTACCCTACGCAAATC
TAAGCACTTCACCTCGTCCTCACTGATCAAACGCGAATCCTCCCTCGGCG
GCATGTTCTCGCAAATGTTGGGAGGGATGCTCAAGGGCCCGGCTCCACCT
CCAGCGGACATGGAAGCATTCAAAGACCCGGCACCTAGCTGGACAGAGCT
ACAGGCACTATTGATCGAGAAGCAGACTGTGGAGGAGCGGGCCTTGCCTG
ATCTGCGCGCGAAGGGCCGCGGCCCCCCCTCTAGCAAGGCATCACTGCGT
TTGTTTGAAGCGCCGGACGGGCACGAACCGCGCGTGGTGCTTTATAGGGA
TACGGCTGCTTGGTGCCCGTATTGCCAGAAGGTGTGGATGTATTTAGGTA
CGTCTTGAGCATTAAAGATGGAAGCTGGAGGAAGATACATTGCGAAATTG
AAGGAAAGAAGCCATGAAAGGCTACAAAAGAAAGGGCGTGCGGGGAATGT
ACTTTGATACAATCGCCTTCATTGGTTTGTAGTATTTGCAGGGCACCTCT
CTGTCCAAATCAATCCTCCACTCATTTCCAATCTCCTATCCTTTTCCTTC
CTTCCTCCATTCCTTCTTCCATTCCTGACACCTTCCACTCAGAGGAAAAG
CGCATTCCCTATCAAGTCAGAAAAGTACCCATGCGGTGCTACGGTCAAAA
ACCCGCCTGGTTTTCACGTCTGTCTGCCTCGGGTCTCTTGCCAGTCATGG
AGCTCGATGGCGACATCGTCATTGAATCAGATGTGATCATCCAAACACTC
GAAGATCGCTTCCCAGACGCCATCCCCCTCCTCCCTCTCGCCTCGGACCC
CGACGCAGCCTTAGTCTCGCCTTTACTCAGGCTTGAACGAGAGTTGTTCA
GTGGTTGGTTGCGGTGGTTGACAGGGAGCACCACCACAAATGAGAGGAGT
AAGATGATCTTCGAGGGAGTGTTAGGGAAGGTAGAAACAGCATTGGCCGC
AAAGGGCGGGCCGTATTTCTTGGGCGAGACATTTTCATTGATTGATTGCA
TTTTTGCCCCGTTCATGGAGAGGATGGCAGGAACCCTGTGCTATTACAAG
GGGTTTGAGATGCGCAATAATGCGAAATACGTAGGAGTGGAACGGTGGTT
CCGGGCGATGGAAAGCAGGGAGAGCTTCGCGAACATCAAGAGTGACTGGT
ACACTCATGCAATGGACATGCCCCCCCAGGTCGGCTCTTGCTCCTCCATC
CCCGAAGCTATCCCTTATGCCGCAGAGCTCTCTGGAAGGGATGGAGTTTC
CTGGACCTTGCCACTCAAACAAAACGGGGTGGAACCTCTCCTCCCCTCCT
TCGAGGAAGGTGCCGCCAGGCGAGAAGCAGTGGCACAGCTGCTGGCGAAT
GCCGAGGCAGTTGTTAAGTTTGCTGCACGTGGCTTGGGCGAACCGGGCGT
TCCCCCCGTGACGGCTGATTTGGCCGACCCGAACGCGAAACCAAATGAAG
CTTATGTGCCTTTACTTGATGCTGCTTTGCGAGGGGTGGCTCATTCAATG
TTGGTAGGGAGGGAGGGCATGTCGATGCCGCCTGGGGAGGGTTTTGTGGC
AGGGGAGGCAGTTGCACAGGGGTTGGATTACCTAAGGGCAAGAGTAGGGG
TACCGAGGGACATGTCATATGAGGCGGCGAGAATGTTCAGGGGTCACTTG
GGCTGGTATGCGGAAGAGTTGAGGAAGGTATGTCAGGCTTAGGAGGGGTT
TTTGGGAGAAATCTTTCAGTCAGGGAGGGTTTCGATTGTACGGAGCGAGG
TGAATGAGTTTCCAAAAAAAGAAAATCAGGAAGGAAAGTGTGTCGCGCGA
AACCCTTAGTTGCCGTAAGCAGCCA

Coding sequence (CDS) from alignment at scaffold_2:987466..989440-

>mRNA_1002 ID=mRNA_1002|Name=jgi.p|Nanoce1779_2|574992|organism=Nannochloropsis oceanica|type=CDS|length=3138bp|location=Sequence derived from alignment at scaffold_2:987466..989440- (Nannochloropsis oceanica)
AGGAAAAGCGCATTCCCTATCAAGTCAGAAAAGTACCCATGCGGTGCTAC
GGTCAAAAACCCGCCTGGTTTTCACGTCTGTCTGCCTCGGGTCTCTTGCC
AGTCATGGAGCTCGATGGCGACATCGTCATTGAATCAGATGTGATCATCC
AAACACTCGAAGATCGCTTCCCAGACGCCATCCCCCTCCTCCCTCTCGCC
TCGGACCCCGACGCAGCCTTAGTCTCGCCTTTACTCAGGCTTGAACGAGA
GTTGTTCAGTGGTTGGTTGCGGTGGTTGACAGGGAGCACCACCACAAATG
AGAGGAGTAAGATGATCTTCGAGGGAGTGTTAGGGAAGGTAGAAACAGCA
TTGGCCGCAAAGGGCGGGCCGTATTTCTTGGGCGAGACATTTTCATTGAT
TGATTGCATTTTTGCCCCGTTCATGGAGAGGATGGCAGGAACCCTGTGCT
ATTACAAGGGGTTTGAGATGCGCAATAATGCGAAATACGTAGGAGTGGAA
CGGTGGTTCCGGGCGATGGAAAGCAGGGAGAGCTTCGCGAACATCAAGAG
TGACTGGTACACTCATGCAATGGACATGCCCCCCCAGGTCGGCTCTTGCT
CCTCCATCCCCGAAGCTATCCCTTATGCCGCAGAGCTCTCTGGAAGGGAT
GGAGTTTCCTGGACCTTGCCACTCAAACAAAACGGGGTGGAACCTCTCCT
CCCCTCCTTCGAGGAAGGTGCCGCCAGGCGAGAAGCAGTGGCACAGCTGC
TGGCGAATGCCGAGGCAGTTGTTAAGTTTGCTGCACGTGGCTTGGGCGAA
CCGGGCGTTCCCCCCGTGACGGCTGATTTGGCCGACCCGAACGCGAAACC
AAATGAAGCTTATGTGCCTTTACTTGATGCTGCTTTGCGAGGGGTGGCTC
ATTCAATGTTGGTAGGGAGGGAGGGCATGTCGATGCCGCCTGGGGAGGGT
TTTGTGGCAGGGGAGGCAGTTGCACAGGGGTTGGATTACCTAAGGGCAAG
AGTAGGGGTACCGAGGGACATGTCATATGAGGCGGCGAGAATGTTCAGGG
GTCACTTGGGCTGGTATGCGGAAGAGTTGAGGAAGGTATGTCAGGCTTAG
ATGCTTGCGCCGCCTTGCCTGCTACAGCCGTTGCTACTTATCTTGAGCTG
TGCGTCATTTGCTGTTCAAGGGTTTGTGCCGCACCCGCCCACGTGTTCTC
CCATCCCTACCCTACGCAAATCTAAGCACTTCACCTCGTCCTCACTGATC
AAACGCGAATCCTCCCTCGGCGGCATGTTCTCGCAAATGTTGGGAGGGAT
GCTCAAGGGCCCGGCTCCACCTCCAGCGGACATGGAAGCATTCAAAGACC
CGGCACCTAGCTGGACAGAGCTACAGGCACTATTGATCGAGAAGCAGACT
GTGGAGGAGCGGGCCTTGCCTGATCTGCGCGCGAAGGGCCGCGGCCCCCC
CTCTAGCAAGGCATCACTGCGTTTGTTTGAAGCGCCGGACGGGCACGAAC
CGCGCGTGGTGCTTTATAGGGATACGGCTGCTTGGTGCCCGTATTGCCAG
AAGGTGTGGATGTATTTAGAGGAAAAGCGCATTCCCTATCAAGTCAGAAA
AGTACCCATGCGGTGCTACGGTCAAAAACCCGCCTGGTTTTCACGTCTGT
CTGCCTCGGGTCTCTTGCCAGTCATGGAGCTCGATGGCGACATCGTCATT
GAATCAGATGTGATCATCCAAACACTCGAAGATCGCTTCCCAGACGCCAT
CCCCCTCCTCCCTCTCGCCTCGGACCCCGACGCAGCCTTAGTCTCGCCTT
TACTCAGGCTTGAACGAGAGTTGTTCAGTGGTTGGTTGCGGTGGTTGACA
GGGAGCACCACCACAAATGAGAGGAGTAAGATGATCTTCGAGGGAGTGTT
AGGGAAGGTAGAAACAGCATTGGCCGCAAAGGGCGGGCCGTATTTCTTGG
GCGAGACATTTTCATTGATTGATTGCATTTTTGCCCCGTTCATGGAGAGG
ATGGCAGGAACCCTGTGCTATTACAAGGGGTTTGAGATGCGCAATAATGC
GAAATACGTAGGAGTGGAACGGTGGTTCCGGGCGATGGAAAGCAGGGAGA
GCTTCGCGAACATCAAGAGTGACTGGTACACTCATGCAATGGACATGCCC
CCCCAGGTCGGCTCTTGCTCCTCCATCCCCGAAGCTATCCCTTATGCCGC
AGAGCTCTCTGGAAGGGATGGAGTTTCCTGGACCTTGCCACTCAAACAAA
ACGGGGTGGAACCTCTCCTCCCCTCCTTCGAGGAAGGTGCCGCCAGGCGA
GAAGCAGTGGCACAGCTGCTGGCGAATGCCGAGGCAGTTGTTAAGTTTGC
TGCACGTGGCTTGGGCGAACCGGGCGTTCCCCCCGTGACGGCTGATTTGG
CCGACCCGAACGCGAAACCAAATGAAGCTTATGTGCCTTTACTTGATGCT
GCTTTGCGAGGGGTGGCTCATTCAATGTTGGTAGGGAGGGAGGGCATGTC
GATGCCGCCTGGGGAGGGTTTTGTGGCAGGGGAGGCAGTTGCACAGGGGT
TGGATTACCTAAGGGCAAGAGTAGGGGTACCGAGGGACATGTCATATGAG
GCGGCGAGAATGTTCAGGGGTCACTTGGGCTGGTATGCGGAAGAGTTGAG
GAAGGTATGTCAGGCTTAGATGCTTGCGCCGCCTTGCCTGCTACAGCCGT
TGCTACTTATCTTGAGCTGTGCGTCATTTGCTGTTCAAGGGTTTGTGCCG
CACCCGCCCACGTGTTCTCCCATCCCTACCCTACGCAAATCTAAGCACTT
CACCTCGTCCTCACTGATCAAACGCGAATCCTCCCTCGGCGGCATGTTCT
CGCAAATGTTGGGAGGGATGCTCAAGGGCCCGGCTCCACCTCCAGCGGAC
ATGGAAGCATTCAAAGACCCGGCACCTAGCTGGACAGAGCTACAGGCACT
ATTGATCGAGAAGCAGACTGTGGAGGAGCGGGCCTTGCCTGATCTGCGCG
CGAAGGGCCGCGGCCCCCCCTCTAGCAAGGCATCACTGCGTTTGTTTGAA
GCGCCGGACGGGCACGAACCGCGCGTGGTGCTTTATAGGGATACGGCTGC
TTGGTGCCCGTATTGCCAGAAGGTGTGGATGTATTTAG

Synonyms

Publications