jgi.p|Nanoce1779_2|633737, mRNA_10016 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633737
Unique Name	mRNA_10016
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1777
Alignment location	scaffold_42:50131..52053 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633823
Track	FilteredModels2
ProteinId	633737

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:50131..52053 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633737	gene_10016	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633737	mRNA_10016-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10016	CDS_10016	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:50131..52053+
coding sequence from alignment at scaffold_42:50131..52053+

mRNA sequence

>mRNA_10016 ID=mRNA_10016|Name=jgi.p|Nanoce1779_2|633737|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp
ACCCCAATACACAGCCCGGGCGCGGAGGCGAGGCAAGCACGCAAATATGG
GCATCGCCGGATTGCTCCCGCTGCTTAAATCAGTGACGCACACGGTGCAT
TTGCGGGAGTACCGGGGAACGACGGCGGGTATCGATGCTTTTTGCTGGTT
GCATCGCGGCGCCTTTACGTGCTGCACTGAGCTGGTGCAGGGCAAGACCA
CGGACAAGTACATCCGCTTTTGCATGGAACGAGTGCGCTTACTGCAAGAA
CATGGAGTGACACCGTTGTTGGTTTTTGACGGGGCCAGCCTCCCCTCCAA
GCGCGACTTGCATCTAGCGCGACGCCAAGCCCGGGTCGAGGCGCGGGCCA
AGGCGCTGGCCCTGCACGAGGAGGGACAACAGGGGCAGGCACGCACTTTT
TTCCAGAAGGCCGTTGTCATTACCCATGAGATGGCCTACGAATTGATGAA
GGCGTTGCGGGCGGCGGGTGTGCGGTATGTGGTGGCGCCCTACGAAGCTG
ATGCCCAGCTGGCCTACCTCTCACGGAAAGGCGTGGTCGACATCGTGATA
ACCGAGGACTCAGATACTATCCCCTACGGCTGCCGACGGGTCCTCTTCAA
GCTAGACAAGGAAGGCAAGGCCCACGAGATCGAAAGCCACAACTTGGCCC
TGAACGACGAGCATGACTTCGAGGGGTGGACTGAGAACATGTTTCTCGAC
ATGTGCCTGCTTGCCGGCTGTGACTACTTGCCCAACCTCCCCGGGCTTGG
CATCAAGACGGCGCACAAGCTCGTCCGGCAACATCGTACGTACAAGAAGA
TCCTGCAGGCTCTCAGGACCATGGGCGGGAAAACCGTGATCCCTCCCGAC
TATATCGAGAATTTCGCCCGTGCACGGCTGACCTTTCGGCACCATTACGT
GTACGACCTTGACGAAAAGTGCGTCGTGCCCCTTACTCCCTTTGCTCCTG
CCCATTTGGAACTAGACTTGGGGTTTTTGGGACCACGGCATGCTCATGGG
TTGGCGCGTGATATTGCCGAGGGGAGGGTGAACCCTGATACGTTGGCGAG
GTACGAGGAGGAGGGGGAGGAGGAGGGGGAGGAAGGGGGGAAAGGTAGTG
GGGGCATGGAGGTTGGAGGAGTAGAAATAGGAGATGCAGCGGGAGCAGAA
GTGGCTGGAGCAGCAGCAGCGGCAGTGGAGGAGATGAGCGCGGAAAGTCA
TCTGGAAATACAGCCACGGTGGGGCGAGCAGACAGGGAGAGAGGGTGAGA
GGGAAGAATTGAAAGAGGTACTGCTGTTGGCGATGGGAATGGAAGAGGAG
GAAGCGTTGGCGTCGGTGTCGAGCCAGTGTTTGGGGGGAAGGACTTTGTA
TGCTGCGAGGAAAGGATACGAGGAGGCAGCAAGAGCAGCCCATCGTGAAA
GCACCCTTCGGGCGGAGCGAGCGGTGGCGCTGATAGAGAGGAGGGAACAT
TCGGTCGGCGGACTCTCTGATGACGCAGCTGGCGATGCCGATAGTAGGAC
GAGGACGAAGGAGGGAAAGATGGAGGAAGGGAGGAAGGGCACCAGCTGTG
TCGGTCAAGCGCCGGGAGCTCTGGCGTTTTCAAGACTCACCGAGAAAGGA
GGACGTGGAGGAGGACGAGGACCAGGAGCGACAGCAGCAGGAACACCACC
ACCACCAGCAGCATGTACAGCGGCAGGGAAAGGAAGAAAGAAGCTTGAAA
GGAACACACCGTAACGAGCACTACCACAGGTTTGCCTCTTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTC

protein sequence of jgi.p|Nanoce1779_2|633737

>mRNA_10016-protein ID=mRNA_10016-protein|Name=jgi.p|Nanoce1779_2|633737|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MGIAGLLPLLKSVTHTVHLREYRGTTAGIDAFCWLHRGAFTCCTELVQGK
TTDKYIRFCMERVRLLQEHGVTPLLVFDGASLPSKRDLHLARRQARVEAR
AKALALHEEGQQGQARTFFQKAVVITHEMAYELMKALRAAGVRYVVAPYE
ADAQLAYLSRKGVVDIVITEDSDTIPYGCRRVLFKLDKEGKAHEIESHNL
ALNDEHDFEGWTENMFLDMCLLAGCDYLPNLPGLGIKTAHKLVRQHRTYK
KILQALRTMGGKTVIPPDYIENFARARLTFRHHYVYDLDEKCVVPLTPFA
PAHLELDLGFLGPRHAHGLARDIAEGRVNPDTLARYEEEGEEEGEEGGKG
SGGMEVGGVEIGDAAGAEVAGAAAAAVEEMSAESHLEIQPRWGEQTGREG
EREELKEVLLLAMGMEEEEALASVSSQCLGGRTLYAARKGYEEAARAAHR
ESTLRAERAVALIERREHSVGGLSDDAAGDADSRTRTKEGKMEEGRKGTS
CVGQAPGALAFSRLTEKGGRGGGRGPGATAAGTPPPPAACTAAGKGRKKL
ERNTP*

mRNA from alignment at scaffold_42:50131..52053+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10016 ID=mRNA_10016|Name=jgi.p|Nanoce1779_2|633737|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at scaffold_42:50131..52053+ (Nannochloropsis oceanica)
ACCCCAATACACAGCCCGGGCGCGGAGGCGAGGCAAGCACGCAAATATGG
GCATCGCCGGATTGCTCCCGCTGCTTAAATCAGTGACGCACACGGTGCAT
TTGCGGGAGTACCGGGGAACGACGGCGGGTATCGATGCTTTTTGCTGGTT
GCATCGCGGCGCCTTTACGTGCTGCACTGAGCTGGTGCAGGGCAAGACCA
CGGACAAGTACATCCGCTTTTGCATGGAACGAGTGCGCTTACTGCAAGAA
CATGGAGTGACACCGTTGTTGGTTTTTGACGGGGCCAGCCTCCCCTCCAA
GCGCGACTTGCATCTAGCGCGACGCCAAGCCCGGGTCGAGGCGCGGGCCA
AGGCGCTGGCCCTGCACGAGGAGGGACAACAGGGGCAGGCACGCACTTTT
TTCCAGAAGGCCGTTGTCATTACCCATGAGATGGCCTACGAATTGATGAA
GGCGTTGCGGGCGGCGGGTGTGCGGTATGTGGTGGCGCCCTACGAAGCTG
ATGCCCAGCTGGCCTACCTCTCACGGAAAGGCGTGGTCGACATCGTGATA
ACCGAGGACTCAGATACTATCCCCTACGGCTGCCGACGGGTCCTCTTCAA
GCTAGACAAGGAAGGCAAGGCCCACGAGATCGAAAGCCACAACTTGGCCC
TGAACGACGAGCATGACTTCGAGGGGTGGACTGAGAACATGTTTCTCGAC
ATGTGCCTGCTTGCCGGCTGTGACTACTTGCCCAACCTCCCCGGGCTTGG
CATCAAGACGGCGCACAAGCTCGTCCGGCAACATCGTACGTACAAGAAGA
TCCTGCAGGCTCTCAGGACCATGGGCGGGAAAACCGTGATCCCTCCCGAC
TATATCGAGAATTTCGCCCGTGCACGGCTGACCTTTCGGCACCATTACGT
GTACGACCTTGACGAAAAGTGCGTCGTGCCCCTTACTCCCTTTGCTCCTG
CCCATTTGGAACTAGACTTGGGGTTTTTGGGACCACGGCATGCTCATGGG
TTGGCGCGTGATATTGCCGAGGGGAGGGTGAACCCTGATACGTTGGCGAG
GTACGAGGAGGAGGGGGAGGAGGAGGGGGAGGAAGGGGGGAAAGGTAGTG
GGGGCATGGAGGTTGGAGGAGTAGAAATAGGAGATGCAGCGGGAGCAGAA
GTGGCTGGAGCAGCAGCAGCGGCAGTGGAGGAGATGAGCGCGGAAAGTCA
TCTGGAAATACAGCCACGGTGGGGCGAGCAGACAGGGAGAGAGGGTGAGA
GGGAAGAATTGAAAGAGGTACTGCTGTTGGCGATGGGAATGGAAGAGGAG
GAAGCGTTGGCGTCGGTGTCGAGCCAGTGTTTGGGGGGAAGGACTTTGTA
TGCTGCGAGGAAAGGATACGAGGAGGCAGCAAGAGCAGCCCATCGTGAAA
GCACCCTTCGGGCGGAGCGAGCGGTGGCGCTGATAGAGAGGAGGGTGAGG
GAGGGAGGGTGTGAGGGAGGAGAGGGAGGAGAGGGAGGGTTTCTGGTGGA
GAGAGGGATGGGGGTTAGGGGAACAGCGAGGCAGGCCTTGGTTCGTCCTT
CAGGGAGCGAAGAAGCTGCTGAATCTATTGCTACCTGCAGGAACATTCGG
TCGGCGGACTCTCTGATGACGCAGCTGGCGATGCCGATAGTAGGACGAGG
ACGAAGGAGGGAAAGATGGAGGAAGGGAGGAAGGGCACCAGCTGTGTCGG
TCAAGCGCCGGGAGCTCTGGCGTTTTCAAGACTCACCGAGAAAGGAGGAC
GTGGAGGAGGACGAGGACCAGGAGCGACAGCAGCAGGAACACCACCACCA
CCAGCAGCATGTACAGCGGCAGGGAAAGGAAGAAAGAAGCTTGAAAGGAA
CACACCGTAACGAGCACTACCACAGGTTTGCCTCTTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTC

Coding sequence (CDS) from alignment at scaffold_42:50131..52053+

>mRNA_10016 ID=mRNA_10016|Name=jgi.p|Nanoce1779_2|633737|organism=Nannochloropsis oceanica|type=CDS|length=3336bp|location=Sequence derived from alignment at scaffold_42:50131..52053+ (Nannochloropsis oceanica)
ATGGGCATCGCCGGATTGCTCCCGCTGCTTAAATCAGTGACGCACACGGT
GCATTTGCGGGAGTACCGGGGAACGACGGCGGGTATCGATGCTTTTTGCT
GGTTGCATCGCGGCGCCTTTACGTGCTGCACTGAGCTGGTGCAGGGCAAG
ACCACGGACAAGTACATCCGCTTTTGCATGGAACGAGTGCGCTTACTGCA
AGAACATGGAGTGACACCGTTGTTGGTTTTTGACGGGGCCAGCCTCCCCT
CCAAGCGCGACTTGCATCTAGCGCGACGCCAAGCCCGGGTCGAGGCGCGG
GCCAAGGCGCTGGCCCTGCACGAGGAGGGACAACAGGGGCAGGCACGCAC
TTTTTTCCAGAAGGCCGTTGTCATTACCCATGAGATGGCCTACGAATTGA
TGAAGGCGTTGCGGGCGGCGGGTGTGCGGTATGTGGTGGCGCCCTACGAA
GCTGATGCCCAGCTGGCCTACCTCTCACGGAAAGGCGTGGTCGACATCGT
GATAACCGAGGACTCAGATACTATCCCCTACGGCTGCCGACGGGTCCTCT
TCAAGCTAGACAAGGAAGGCAAGGCCCACGAGATCGAAAGCCACAACTTG
GCCCTGAACGACGAGCATGACTTCGAGGGGTGGACTGAGAACATGTTTCT
CGACATGTGCCTGCTTGCCGGCTGTGACTACTTGCCCAACCTCCCCGGGC
TTGGCATCAAGACGGCGCACAAGCTCGTCCGGCAACATCGTACGTACAAG
AAGATCCTGCAGGCTCTCAGGACCATGGGCGGGAAAACCGTGATCCCTCC
CGACTATATCGAGAATTTCGCCCGTGCACGGCTGACCTTTCGGCACCATT
ACGTGTACGACCTTGACGAAAAGTGCGTCGTGCCCCTTACTCCCTTTGCT
CCTGCCCATTTGGAACTAGACTTGGGGTTTTTGGGACCACGGCATGCTCA
TGGGTTGGCGCGTGATATTGCCGAGGGGAGGGTGAACCCTGATACGTTGG
CGAGGTACGAGGAGGAGGGGGAGGAGGAGGGGGAGGAAGGGGGGAAAGGT
AGTGGGGGCATGGAGGTTGGAGGAGTAGAAATAGGAGATGCAGCGGGAGC
AGAAGTGGCTGGAGCAGCAGCAGCGGCAGTGGAGGAGATGAGCGCGGAAA
GTCATCTGGAAATACAGCCACGGTGGGGCGAGCAGACAGGGAGAGAGGGT
GAGAGGGAAGAATTGAAAGAGGTACTGCTGTTGGCGATGGGAATGGAAGA
GGAGGAAGCGTTGGCGTCGGTGTCGAGCCAGTGTTTGGGGGGAAGGACTT
TGTATGCTGCGAGGAAAGGATACGAGGAGGCAGCAAGAGCAGCCCATCGT
GAAAGCACCCTTCGGGCGGAGCGAGCGGTGGCGCTGATAGAGAGGAGGGA
ACATTCGGTCGGCGGACTCTCTGATGACGCAGCTGGCGATGCCGATAGTA
GGACGAGGACGAAGGAGGGAAAGATGGAGGAAGGGAGGAAGGGCACCAGC
TGTGTCGGTCAAGCGCCGGGAGCTCTGGCGTTTTCAAGACTCACCGAGAA
AGGAGGACGTGGAGGAGGACGAGGACCAGGAGCGACAGCAGCAGGAACAC
CACCACCACCAGCAGCATGTACAGCGGCAGGGAAAGGAAGAAAGAAGCTT
GAAAGGAACACACCGTAAATGGGCATCGCCGGATTGCTCCCGCTGCTTAA
ATCAGTGACGCACACGGTGCATTTGCGGGAGTACCGGGGAACGACGGCGG
GTATCGATGCTTTTTGCTGGTTGCATCGCGGCGCCTTTACGTGCTGCACT
GAGCTGGTGCAGGGCAAGACCACGGACAAGTACATCCGCTTTTGCATGGA
ACGAGTGCGCTTACTGCAAGAACATGGAGTGACACCGTTGTTGGTTTTTG
ACGGGGCCAGCCTCCCCTCCAAGCGCGACTTGCATCTAGCGCGACGCCAA
GCCCGGGTCGAGGCGCGGGCCAAGGCGCTGGCCCTGCACGAGGAGGGACA
ACAGGGGCAGGCACGCACTTTTTTCCAGAAGGCCGTTGTCATTACCCATG
AGATGGCCTACGAATTGATGAAGGCGTTGCGGGCGGCGGGTGTGCGGTAT
GTGGTGGCGCCCTACGAAGCTGATGCCCAGCTGGCCTACCTCTCACGGAA
AGGCGTGGTCGACATCGTGATAACCGAGGACTCAGATACTATCCCCTACG
GCTGCCGACGGGTCCTCTTCAAGCTAGACAAGGAAGGCAAGGCCCACGAG
ATCGAAAGCCACAACTTGGCCCTGAACGACGAGCATGACTTCGAGGGGTG
GACTGAGAACATGTTTCTCGACATGTGCCTGCTTGCCGGCTGTGACTACT
TGCCCAACCTCCCCGGGCTTGGCATCAAGACGGCGCACAAGCTCGTCCGG
CAACATCGTACGTACAAGAAGATCCTGCAGGCTCTCAGGACCATGGGCGG
GAAAACCGTGATCCCTCCCGACTATATCGAGAATTTCGCCCGTGCACGGC
TGACCTTTCGGCACCATTACGTGTACGACCTTGACGAAAAGTGCGTCGTG
CCCCTTACTCCCTTTGCTCCTGCCCATTTGGAACTAGACTTGGGGTTTTT
GGGACCACGGCATGCTCATGGGTTGGCGCGTGATATTGCCGAGGGGAGGG
TGAACCCTGATACGTTGGCGAGGTACGAGGAGGAGGGGGAGGAGGAGGGG
GAGGAAGGGGGGAAAGGTAGTGGGGGCATGGAGGTTGGAGGAGTAGAAAT
AGGAGATGCAGCGGGAGCAGAAGTGGCTGGAGCAGCAGCAGCGGCAGTGG
AGGAGATGAGCGCGGAAAGTCATCTGGAAATACAGCCACGGTGGGGCGAG
CAGACAGGGAGAGAGGGTGAGAGGGAAGAATTGAAAGAGGTACTGCTGTT
GGCGATGGGAATGGAAGAGGAGGAAGCGTTGGCGTCGGTGTCGAGCCAGT
GTTTGGGGGGAAGGACTTTGTATGCTGCGAGGAAAGGATACGAGGAGGCA
GCAAGAGCAGCCCATCGTGAAAGCACCCTTCGGGCGGAGCGAGCGGTGGC
GCTGATAGAGAGGAGGGAACATTCGGTCGGCGGACTCTCTGATGACGCAG
CTGGCGATGCCGATAGTAGGACGAGGACGAAGGAGGGAAAGATGGAGGAA
GGGAGGAAGGGCACCAGCTGTGTCGGTCAAGCGCCGGGAGCTCTGGCGTT
TTCAAGACTCACCGAGAAAGGAGGACGTGGAGGAGGACGAGGACCAGGAG
CGACAGCAGCAGGAACACCACCACCACCAGCAGCATGTACAGCGGCAGGG
AAAGGAAGAAAGAAGCTTGAAAGGAACACACCGTAA

Synonyms

Publications