jgi.p|Nanoce1779_2|674373, mRNA_10013 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674373
Unique Name	mRNA_10013
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2612
Alignment location	scaffold_42:40422..43033 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674459
Track	FilteredModels2
ProteinId	674373

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:40422..43033 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674373	gene_10013	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10013	CDS_10013	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674373	mRNA_10013-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:40422..43033-
coding sequence from alignment at scaffold_42:40422..43033-

mRNA sequence

>mRNA_10013 ID=mRNA_10013|Name=jgi.p|Nanoce1779_2|674373|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp
ACAGAACCAACCACAAGCAATTCTCGTCCACTCTCATGTCCTCTTATCCA
GCCGGCGGGCCGCCTCCGCCTGGGGCTCCTCAGCCTCCGTCCCACCCCCG
TGACTATAATCCCTCTACACCCGATGAAAAGGCTTACTACGACCAGCTTT
TCGTCATTGCCGACACGGCAGCCACGGGCCAGTTGCAGGGGTTGCACGCT
GTGAATTTCTTTAAGCTCTCGGGGTTGGATGTGGGGATTCTGAAGAACGT
CTGGAGCATCGCTGATGCCCGCCAGCAGCATTACCTCGACCGGGAGGACT
TTTATGTCGCCTTGCGCTTGATTGCCATGGCCCAAAACAACATTCCCCCC
ACCCGCGAAAAGCTTCTCGAGACAGCGGTGATCCAGCTGCCTTATGCGCG
TTTTCAGAACGTGCCTCCTCCTGCCACTACTCCTCCCCCTCCTCCTTCCC
CTCCTCAAGCCCTGTTGTCTCCTTCCCGGAGCGGACAGGACCCCTATGCG
ATGTCCGGGGAAGACCGCGCGAGGTACTTGAATCACTTCGCGCCCTACGA
CACGAATGGGGATGGTTTCGTCGAGGGAGCGCAGGCTGTCGAGTTGTTTT
CTCGCTCCGGATTGGACCGACAGGCCCTGGGCAAGGTGTGGGAGCTCTCG
GACAACGACAAAGACAGCAGGCTCAATCCCGATGAATTCGCAGTGGCCAT
GCATCTGATCGTTTGCGTTAGTAAAAGGGGTTTACCGGTGCCGGCGCGCC
TTCCCCCCTCTCTCGCTTCTCTTTTAGGGATCAAGGAAGGAGGAGGGGTT
GGCAGCCCGGCTGCGCCTGTACCGCCCTCCTCCCCTGCGTCTTCCTCCTT
GCCGCCTCGCGTTCAGCAACCACTTGCTGCTTCCGCTTCTTCTCGGAGCA
TCCCTTCTCCTCCTGTGTCGATCGGTCCTCCTTCTCCCTCTTTGCACGAC
ACCAGCAAGTCCACCTTGGCCGGTACTCTCACCTCCTCCTCCCTCGCTCC
CTCGCCCTCCCCCACGACCTCCACTCCCCCGCAGCAGACCAATCGCTCCT
CCACCCTCCCTTCCAGCCTCAACATGTCCTCTTCCTCCGCCCCCTCCTCC
TTCAAACCCGCCACCTTCCCTCCTCCTGCTCCTCTCCCGCAGACAAACAG
CAGCAGCAGCAGCAGCATCAACGATCTCACCGGGGTAGTGAAGGACACGC
AGGCCCTCGCTCAGAAATTGAAAGCCGAAAAAATCTCTCTCAGTGCCACT
ATTGATTCAAACATGGCCGATGGGAAGCGAACACAAGCAGCACTTGTGAC
GGCTTTGGGCGAGATCACTTCTCTGCAGGGTGAGCTCGCCGCGCTTCGTC
AGGCTGCTGCTGCTGCTGACGAGGAGCAGCGGCAGGCATTGCAGAATCTT
GGGGGGGCGAGGAAGCAGAGGGAGATGCTGTTGATGGAGGTGGAGAAGGT
GAGGGGGGAGGTAGAGCGGCTGCAACAGCAGAAGAGCGACTTGTCTGAAG
AGCTGGCCAGTCTGCGGATTCAGGTGGGGGTGGTTGGCGCGGGGGAGGAA
GGGATGGAGGCGCTGCGGAAGGACCACGTCGCGGAGGCGGGGATGAATAG
GACGGAGATTGTGTTGTTACAGTCGCTGTTGAGTGCGATGGGGAAGGCAA
GGGAGGAGGGAGGTAGGGAGGTGGAGGGGTTGGAAGGGCAGGTGGCGGGC
GCCAAGCAGGCCTTGGCCCAGGTACAAGCGTCAGTGGTAGCGAAGAAGGA
GGAGCTTGATAAGGCACGGGAGGAGAGAGACTTTACCACGGCGGAACGTC
ACGCGGCTTTGGTCCAGTTGGCGAGCGGAGAGTTGAAGCTACCCCCGTCC
AATTGCAGCAGCAGCAGCAGCAACAACAACGGCAACAACAGCAATGGGGA
GCCTGCGACTCTCTCTGCCTCCTCAGCATCCTCCCCCAAAACCACAGCTA
CAGCTCCTTCCTCTTCCTCCATTCCCCCTTCCACCAAGCCCTCGGCCACC
TTCGGCTTTGATGAGGAAAGCGATGCCTTGTCTGCTGCCGCTCCAAAGAT
GATTCCCTCCTCCGTGGGCACCTCCGCTTCCTCCTTCCCTGCCTCCCTCC
CGTCCTCCACGGCAGCTGCTACCTCGACCTTCTCAACTTCCACCTCCTCG
CAGCCTCCGCACAATGCCTCTCCCACATTGAGTAGCGGCACCCCACCCCC
TCCTGCTCCTCCTGCTACCACAGCGACTGCATCAGGAGGAGGAGTGAAGG
ATGCGTTCAGTGATGGATTTGACGACGATGCCTTCGGCCCTTCTCCCTCT
GCTGCTGCTGCTGCTCCTCCCTCCAATCTCGTCAAAAGCAGCAGCAGTAA
CAGCAACAGCAACGGCTATATGGAGAATGCTACTGTTGGAGATGACTACG
ACTTTCCTGCGCCGGAGGAGGGAGGTCTAGATGATTCCTTCCCTGCGCCT
GAAGAGGTATTTGGGGGAGTGAAGATGAGTGCTCCTTCGACTGCTGTTGT
CCGTGCTGCAGCTGCTCCTGCTGTTATTCCTGCTTCCTCTGAGAGAAAGG
AGCTGATGGGAGTGAGTGTGATGGGGGGGGGGGGGGGGGGGGAGCAGCAG
GACAAGCGATGA

protein sequence of jgi.p|Nanoce1779_2|674373

>mRNA_10013-protein ID=mRNA_10013-protein|Name=jgi.p|Nanoce1779_2|674373|organism=Nannochloropsis oceanica|type=polypeptide|length=859bp
MSSYPAGGPPPPGAPQPPSHPRDYNPSTPDEKAYYDQLFVIADTAATGQL
QGLHAVNFFKLSGLDVGILKNVWSIADARQQHYLDREDFYVALRLIAMAQ
NNIPPTREKLLETAVIQLPYARFQNVPPPATTPPPPPSPPQALLSPSRSG
QDPYAMSGEDRARYLNHFAPYDTNGDGFVEGAQAVELFSRSGLDRQALGK
VWELSDNDKDSRLNPDEFAVAMHLIVCVSKRGLPVPARLPPSLASLLGIK
EGGGVGSPAAPVPPSSPASSSLPPRVQQPLAASASSRSIPSPPVSIGPPS
PSLHDTSKSTLAGTLTSSSLAPSPSPTTSTPPQQTNRSSTLPSSLNMSSS
SAPSSFKPATFPPPAPLPQTNSSSSSSINDLTGVVKDTQALAQKLKAEKI
SLSATIDSNMADGKRTQAALVTALGEITSLQGELAALRQAAAAADEEQRQ
ALQNLGGARKQREMLLMEVEKVRGEVERLQQQKSDLSEELASLRIQVGVV
GAGEEGMEALRKDHVAEAGMNRTEIVLLQSLLSAMGKAREEGGREVEGLE
GQVAGAKQALAQVQASVVAKKEELDKAREERDFTTAERHAALVQLASGEL
KLPPSNCSSSSSNNNGNNSNGEPATLSASSASSPKTTATAPSSSSIPPST
KPSATFGFDEESDALSAAAPKMIPSSVGTSASSFPASLPSSTAAATSTFS
TSTSSQPPHNASPTLSSGTPPPPAPPATTATASGGGVKDAFSDGFDDDAF
GPSPSAAAAAPPSNLVKSSSSNSNSNGYMENATVGDDYDFPAPEEGGLDD
SFPAPEEVFGGVKMSAPSTAVVRAAAAPAVIPASSERKELMGVSVMGGGG
GGEQQDKR*

mRNA from alignment at scaffold_42:40422..43033-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10013 ID=mRNA_10013|Name=jgi.p|Nanoce1779_2|674373|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp|location=Sequence derived from alignment at scaffold_42:40422..43033- (Nannochloropsis oceanica)
ACAGAACCAACCACAAGCAATTCTCGTCCACTCTCATGTCCTCTTATCCA
GCCGGCGGGCCGCCTCCGCCTGGGGCTCCTCAGCCTCCGTCCCACCCCCG
TGACTATAATCCCTCTACACCCGATGAAAAGGCTTACTACGACCAGCTTT
TCGTCATTGCCGACACGGCAGCCACGGGCCAGTTGCAGGGGTTGCACGCT
GTGAATTTCTTTAAGCTCTCGGGGTTGGATGTGGGGATTCTGAAGAACGT
CTGGAGCATCGCTGATGCCCGCCAGCAGCATTACCTCGACCGGGAGGACT
TTTATGTCGCCTTGCGCTTGATTGCCATGGCCCAAAACAACATTCCCCCC
ACCCGCGAAAAGCTTCTCGAGACAGCGGTGATCCAGCTGCCTTATGCGCG
TTTTCAGAACGTGCCTCCTCCTGCCACTACTCCTCCCCCTCCTCCTTCCC
CTCCTCAAGCCCTGTTGTCTCCTTCCCGGAGCGGACAGGACCCCTATGCG
ATGTCCGGGGAAGACCGCGCGAGGTACTTGAATCACTTCGCGCCCTACGA
CACGAATGGGGATGGTTTCGTCGAGGGAGCGCAGGCTGTCGAGTTGTTTT
CTCGCTCCGGATTGGACCGACAGGCCCTGGGCAAGGTGTGGGAGCTCTCG
GACAACGACAAAGACAGCAGGCTCAATCCCGATGAATTCGCAGTGGCCAT
GCATCTGATCGTTTGCGTTAGTAAAAGGGGTTTACCGGTGCCGGCGCGCC
TTCCCCCCTCTCTCGCTTCTCTTTTAGGGATCAAGGAAGGAGGAGGGGTT
GGCAGCCCGGCTGCGCCTGTACCGCCCTCCTCCCCTGCGTCTTCCTCCTT
GCCGCCTCGCGTTCAGCAACCACTTGCTGCTTCCGCTTCTTCTCGGAGCA
TCCCTTCTCCTCCTGTGTCGATCGGTCCTCCTTCTCCCTCTTTGCACGAC
ACCAGCAAGTCCACCTTGGCCGGTACTCTCACCTCCTCCTCCCTCGCTCC
CTCGCCCTCCCCCACGACCTCCACTCCCCCGCAGCAGACCAATCGCTCCT
CCACCCTCCCTTCCAGCCTCAACATGTCCTCTTCCTCCGCCCCCTCCTCC
TTCAAACCCGCCACCTTCCCTCCTCCTGCTCCTCTCCCGCAGACAAACAG
CAGCAGCAGCAGCAGCATCAACGATCTCACCGGGGTAGTGAAGGACACGC
AGGCCCTCGCTCAGAAATTGAAAGCCGAAAAAATCTCTCTCAGTGCCACT
ATTGATTCAAACATGGCCGATGGGAAGCGAACACAAGCAGCACTTGTGAC
GGCTTTGGGCGAGATCACTTCTCTGCAGGGTGAGCTCGCCGCGCTTCGTC
AGGCTGCTGCTGCTGCTGACGAGGAGCAGCGGCAGGCATTGCAGAATCTT
GGGGGGGCGAGGAAGCAGAGGGAGATGCTGTTGATGGAGGTGGAGAAGGT
GAGGGGGGAGGTAGAGCGGCTGCAACAGCAGAAGAGCGACTTGTCTGAAG
AGCTGGCCAGTCTGCGGATTCAGGTGGGGGTGGTTGGCGCGGGGGAGGAA
GGGATGGAGGCGCTGCGGAAGGACCACGTCGCGGAGGCGGGGATGAATAG
GACGGAGATTGTGTTGTTACAGTCGCTGTTGAGTGCGATGGGGAAGGCAA
GGGAGGAGGGAGGTAGGGAGGTGGAGGGGTTGGAAGGGCAGGTGGCGGGC
GCCAAGCAGGCCTTGGCCCAGGTACAAGCGTCAGTGGTAGCGAAGAAGGA
GGAGCTTGATAAGGCACGGGAGGAGAGAGACTTTACCACGGCGGAACGTC
ACGCGGCTTTGGTCCAGTTGGCGAGCGGAGAGTTGAAGCTACCCCCGTCC
AATTGCAGCAGCAGCAGCAGCAACAACAACGGCAACAACAGCAATGGGGA
GCCTGCGACTCTCTCTGCCTCCTCAGCATCCTCCCCCAAAACCACAGCTA
CAGCTCCTTCCTCTTCCTCCATTCCCCCTTCCACCAAGCCCTCGGCCACC
TTCGGCTTTGATGAGGAAAGCGATGCCTTGTCTGCTGCCGCTCCAAAGAT
GATTCCCTCCTCCGTGGGCACCTCCGCTTCCTCCTTCCCTGCCTCCCTCC
CGTCCTCCACGGCAGCTGCTACCTCGACCTTCTCAACTTCCACCTCCTCG
CAGCCTCCGCACAATGCCTCTCCCACATTGAGTAGCGGCACCCCACCCCC
TCCTGCTCCTCCTGCTACCACAGCGACTGCATCAGGAGGAGGAGTGAAGG
ATGCGTTCAGTGATGGATTTGACGACGATGCCTTCGGCCCTTCTCCCTCT
GCTGCTGCTGCTGCTCCTCCCTCCAATCTCGTCAAAAGCAGCAGCAGTAA
CAGCAACAGCAACGGCTATATGGAGAATGCTACTGTTGGAGATGACTACG
ACTTTCCTGCGCCGGAGGAGGGAGGTCTAGATGATTCCTTCCCTGCGCCT
GAAGAGGTATTTGGGGGAGTGAAGATGAGTGCTCCTTCGACTGCTGTTGT
CCGTGCTGCAGCTGCTCCTGCTGTTATTCCTGCTTCCTCTGAGAGAAAGG
AGCTGATGGGAGTGAGTGTGATGGGGGGGGGGGGGGGGGGGGAGCAGCAG
GACAAGCGATGA

Coding sequence (CDS) from alignment at scaffold_42:40422..43033-

>mRNA_10013 ID=mRNA_10013|Name=jgi.p|Nanoce1779_2|674373|organism=Nannochloropsis oceanica|type=CDS|length=2577bp|location=Sequence derived from alignment at scaffold_42:40422..43033- (Nannochloropsis oceanica)
ATGTCCTCTTATCCAGCCGGCGGGCCGCCTCCGCCTGGGGCTCCTCAGCC
TCCGTCCCACCCCCGTGACTATAATCCCTCTACACCCGATGAAAAGGCTT
ACTACGACCAGCTTTTCGTCATTGCCGACACGGCAGCCACGGGCCAGTTG
CAGGGGTTGCACGCTGTGAATTTCTTTAAGCTCTCGGGGTTGGATGTGGG
GATTCTGAAGAACGTCTGGAGCATCGCTGATGCCCGCCAGCAGCATTACC
TCGACCGGGAGGACTTTTATGTCGCCTTGCGCTTGATTGCCATGGCCCAA
AACAACATTCCCCCCACCCGCGAAAAGCTTCTCGAGACAGCGGTGATCCA
GCTGCCTTATGCGCGTTTTCAGAACGTGCCTCCTCCTGCCACTACTCCTC
CCCCTCCTCCTTCCCCTCCTCAAGCCCTGTTGTCTCCTTCCCGGAGCGGA
CAGGACCCCTATGCGATGTCCGGGGAAGACCGCGCGAGGTACTTGAATCA
CTTCGCGCCCTACGACACGAATGGGGATGGTTTCGTCGAGGGAGCGCAGG
CTGTCGAGTTGTTTTCTCGCTCCGGATTGGACCGACAGGCCCTGGGCAAG
GTGTGGGAGCTCTCGGACAACGACAAAGACAGCAGGCTCAATCCCGATGA
ATTCGCAGTGGCCATGCATCTGATCGTTTGCGTTAGTAAAAGGGGTTTAC
CGGTGCCGGCGCGCCTTCCCCCCTCTCTCGCTTCTCTTTTAGGGATCAAG
GAAGGAGGAGGGGTTGGCAGCCCGGCTGCGCCTGTACCGCCCTCCTCCCC
TGCGTCTTCCTCCTTGCCGCCTCGCGTTCAGCAACCACTTGCTGCTTCCG
CTTCTTCTCGGAGCATCCCTTCTCCTCCTGTGTCGATCGGTCCTCCTTCT
CCCTCTTTGCACGACACCAGCAAGTCCACCTTGGCCGGTACTCTCACCTC
CTCCTCCCTCGCTCCCTCGCCCTCCCCCACGACCTCCACTCCCCCGCAGC
AGACCAATCGCTCCTCCACCCTCCCTTCCAGCCTCAACATGTCCTCTTCC
TCCGCCCCCTCCTCCTTCAAACCCGCCACCTTCCCTCCTCCTGCTCCTCT
CCCGCAGACAAACAGCAGCAGCAGCAGCAGCATCAACGATCTCACCGGGG
TAGTGAAGGACACGCAGGCCCTCGCTCAGAAATTGAAAGCCGAAAAAATC
TCTCTCAGTGCCACTATTGATTCAAACATGGCCGATGGGAAGCGAACACA
AGCAGCACTTGTGACGGCTTTGGGCGAGATCACTTCTCTGCAGGGTGAGC
TCGCCGCGCTTCGTCAGGCTGCTGCTGCTGCTGACGAGGAGCAGCGGCAG
GCATTGCAGAATCTTGGGGGGGCGAGGAAGCAGAGGGAGATGCTGTTGAT
GGAGGTGGAGAAGGTGAGGGGGGAGGTAGAGCGGCTGCAACAGCAGAAGA
GCGACTTGTCTGAAGAGCTGGCCAGTCTGCGGATTCAGGTGGGGGTGGTT
GGCGCGGGGGAGGAAGGGATGGAGGCGCTGCGGAAGGACCACGTCGCGGA
GGCGGGGATGAATAGGACGGAGATTGTGTTGTTACAGTCGCTGTTGAGTG
CGATGGGGAAGGCAAGGGAGGAGGGAGGTAGGGAGGTGGAGGGGTTGGAA
GGGCAGGTGGCGGGCGCCAAGCAGGCCTTGGCCCAGGTACAAGCGTCAGT
GGTAGCGAAGAAGGAGGAGCTTGATAAGGCACGGGAGGAGAGAGACTTTA
CCACGGCGGAACGTCACGCGGCTTTGGTCCAGTTGGCGAGCGGAGAGTTG
AAGCTACCCCCGTCCAATTGCAGCAGCAGCAGCAGCAACAACAACGGCAA
CAACAGCAATGGGGAGCCTGCGACTCTCTCTGCCTCCTCAGCATCCTCCC
CCAAAACCACAGCTACAGCTCCTTCCTCTTCCTCCATTCCCCCTTCCACC
AAGCCCTCGGCCACCTTCGGCTTTGATGAGGAAAGCGATGCCTTGTCTGC
TGCCGCTCCAAAGATGATTCCCTCCTCCGTGGGCACCTCCGCTTCCTCCT
TCCCTGCCTCCCTCCCGTCCTCCACGGCAGCTGCTACCTCGACCTTCTCA
ACTTCCACCTCCTCGCAGCCTCCGCACAATGCCTCTCCCACATTGAGTAG
CGGCACCCCACCCCCTCCTGCTCCTCCTGCTACCACAGCGACTGCATCAG
GAGGAGGAGTGAAGGATGCGTTCAGTGATGGATTTGACGACGATGCCTTC
GGCCCTTCTCCCTCTGCTGCTGCTGCTGCTCCTCCCTCCAATCTCGTCAA
AAGCAGCAGCAGTAACAGCAACAGCAACGGCTATATGGAGAATGCTACTG
TTGGAGATGACTACGACTTTCCTGCGCCGGAGGAGGGAGGTCTAGATGAT
TCCTTCCCTGCGCCTGAAGAGGTATTTGGGGGAGTGAAGATGAGTGCTCC
TTCGACTGCTGTTGTCCGTGCTGCAGCTGCTCCTGCTGTTATTCCTGCTT
CCTCTGAGAGAAAGGAGCTGATGGGAGTGAGTGTGATGGGGGGGGGGGGG
GGGGGGGAGCAGCAGGACAAGCGATGA

Synonyms

Publications