jgi.p|Nanoce1779_2|560563, mRNA_10012 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|560563
Unique Name	mRNA_10012
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1976
Alignment location	scaffold_42:37736..39765 -

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Properties


Property Name	Value
TranscriptId	560649
Track	FilteredModels2
ProteinId	560563

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:37736..39765 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560563	gene_10012	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560563	mRNA_10012-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10012	CDS_10012	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:37736..39765-
coding sequence from alignment at scaffold_42:37736..39765-

mRNA sequence

>mRNA_10012 ID=mRNA_10012|Name=jgi.p|Nanoce1779_2|560563|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp
CTTTTTGAATGAGAGGGGATCACCTTTAGGGTGTCTATAGAAGAGGAAAT
GCCGTCTGTCCACCTTGTGTCGATCTCACGCACCCTCACACAATCGCACA
AACACAGCAGACACAACGTGCAGAGGGATAACCAGCCGCTTTCTAAAGTC
TGCCACCAGCAAGCCTCTCTTTAGCTACCCTACTGCCATTACTCCCTCGA
CCTCCCTCTAAATCGACCTACAACCCAACCCGCTCCCTAAAGCATATCAA
CCATGCCGCCCGCCGCCTACGACTCCCGCCAGGTGCAAATAGTCCTCCAA
TCATTGCGTGCCCAAGGTATCCTGCAGCCCTCCAAGGCCCGCGCAGGGGA
AGACGTGGTGATTGCCTATGACTTGGATGCCTTGCATACGGGGTTCGACA
GCCTCGTCAAAGCCTTCCCCCTTCATTTCCTCCACTGCTATGCCATCAAA
GCCGCACCCATGGGCTTCATCCTCCAAGCAGCCATTCGGGCAGGGCTAGG
ACTCGAAGCTGCTTCAATTCTAGAGGTCGAAAGCGCCCTCTTTCACGGCT
GTCCCCCGGAAAAGATTGTCTTTGACTCCCCCGCCAAGACCTACAAAGAG
CTGGACTTCGCCTTGTCCAAAGGTATTCACATCAACGCCAACACTCTCGA
GGAACTTGATCGCATTGCCTCCATCCTCTCAGCAACATCCTCCTCCACTT
TTCCCCCTCCCTCCATCGGCTTGCGTATCAACCCCCTCGTCGGCGCGGGT
ACAATCCAAGAACTCAGCGTCGCCACTGCCACATCCAAATTCGGTGTCCC
CCTCACCCTCGACACCTCCTCCTTCTCCTCTTCTTCTTTTCCTTGTTCCT
CCTCTTATTTTTCCTTGAGCAATAAACATAAAGTCATCTCCTACTTCCAT
AAGTACCCCTGGCTGACTGGCCTCCACATACACGTCGGGTCGCAAGGACT
CGGGATGGATCAACTAGCACAAGGCGTTAAGGTCCTCATCGCCCTCACAG
AAGAAGTAGAGGAATCGCTTTCTAAGAATGGGGCAGAGATGGAGGGAAGG
AGAAGGATCACCACGTTGGATATCGGAGGGGGGTTGGCCGCGAATTATCT
ATCGAATCAAGCCATGCCTACTCATGCGCAGCTGGTGGAGGTTTTGAGGG
AGGCGGCTCCTTCTCTTTTCGTTCCGCCCCCACTTTCTTCCTCGAATAGA
AACGGAAGCAATGGCAGCAGTGGCAGCAGTAGCAGTGGTCCTTGCGTGAG
GGTAGTGACGGAGTATGGTCGCTCCCTTACGGCGAAAACTGCCTGGCTTG
CCAGCCGGGAAGAGGGAGGACGCGGGACGACAGGATTGCGAACGGCAATT
CTGCATGCGGGTGCCGACGTGTTGTTGCGCGAGTGCTACGTGCCGGGGAA
GTTCTACCATCGATTTACAGTGCACGACAAAGATGGCCACCTGGCCGAAG
TAAAGGAAGGAGGGAAGGAGGAAGGGCAAGTGCACGCACGCACCCCTCGC
CTTCACAATCTGGCTGGGCCTCTGTGCTTTGCGGGGGACGTGATTGTAAG
CGGCATAAAGTTACCAAAAGTTGAGTCAGGAGACTGGCTTGTCGTGCATG
ATGTCGGAGGGTACACTCTGGCCTTGTTTTCTCGCTATTGCTCAAGAGCC
GCGCCAGCCGTGGTTGGGTATAGAATAGGAAGAGAGGGAGGGAATGAGGC
AGGGATGGGGGTGACGGTGGAGGTGCTTCAGGGAAGGGAGGCGGGGGAGA
GTGTGTTGGAATTTTGGGGGCCGCGAGGGGAGAGGGAAAGGTAGAAGAGA
GGAAGGGAGGAGGAGTCCTCGTGACCTGGGTGGCTTGTGTGCACTGTGAA
TGATTGAGAGTATCATGACGACATTATATTTTTTGTGTGTCAATTTGGGA
TGGGCGTGCATGAATAATCGTGTGCTTCAAGCTTGTGGTCTAAATCTGTC
TGGCTTGTTTTCTTTTTTGTTTCTCG

protein sequence of jgi.p|Nanoce1779_2|560563

>mRNA_10012-protein ID=mRNA_10012-protein|Name=jgi.p|Nanoce1779_2|560563|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MPPAAYDSRQVQIVLQSLRAQGILQPSKARAGEDVVIAYDLDALHTGFDS
LVKAFPLHFLHCYAIKAAPMGFILQAAIRAGLGLEAASILEVESALFHGC
PPEKIVFDSPAKTYKELDFALSKGIHINANTLEELDRIASILSATSSSTF
PPPSIGLRINPLVGAGTIQELSVATATSKFGVPLTLDTSSFSSSSFPCSS
SYFSLSNKHKVISYFHKYPWLTGLHIHVGSQGLGMDQLAQGVKVLIALTE
EVEESLSKNGAEMEGRRRITTLDIGGGLAANYLSNQAMPTHAQLVEVLRE
AAPSLFVPPPLSSSNRNGSNGSSGSSSSGPCVRVVTEYGRSLTAKTAWLA
SREEGGRGTTGLRTAILHAGADVLLRECYVPGKFYHRFTVHDKDGHLAEV
KEGGKEEGQVHARTPRLHNLAGPLCFAGDVIVSGIKLPKVESGDWLVVHD
VGGYTLALFSRYCSRAAPAVVGYRIGREGGNEAGMGVTVEVLQGREAGES
VLEFWGPRGERER*

mRNA from alignment at scaffold_42:37736..39765-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10012 ID=mRNA_10012|Name=jgi.p|Nanoce1779_2|560563|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at scaffold_42:37736..39765- (Nannochloropsis oceanica)
CTTTTTGAATGAGAGGGGATCACCTTTAGGGTGTCTATAGAAGAGGAAAT
GCCGTCTGTCCACCTTGTGTCGATCTCACGCACCCTCACACAATCGCACA
AACACAGCAGACACAACGTGCAGAGGGATAACCAGCCGCTTTCTAAAGTC
TGCCACCAGCAAGCCTCTCTTTAGCTACCCTACTGCCATTACTCCCTCGA
CCTCCCTCTAAATCGACCTACAACCCAACCCGCTCCCTAAAGCATATCAA
CCATGCCGCCCGCCGCCTACGACTCCCGCCAGGTGCAAATAGTCCTCCAA
TCATTGCGTGCCCAAGGTATCCTGCAGCCCTCCAAGGCCCGCGCAGGGGA
AGACGTGGTGATTGCCTATGACTTGGATGCCTTGCATACGGGGTTCGACA
GCCTCGTCAAAGCCTTCCCCCTTCATTTCCTCCACTGCTATGCCATCAAA
GCCGCACCCATGGGCTTCATCCTCCAAGCAGCCATTCGGGCAGGGCTAGG
ACTCGAAGCTGCTTCAATTCTAGAGGTCGAAAGCGCCCTCTTTCACGGCT
GTCCCCCGGAAAAGATTGTCTTTGACTCCCCCGCCAAGACCTACAAAGAG
CTGGACTTCGCCTTGTCCAAAGGTATTCACATCAACGCCAACACTCTCGA
GGAACTTGATCGCATTGCCTCCATCCTCTCAGCAACATCCTCCTCCACTT
TTCCCCCTCCCTCCATCGGCTTGCGTATCAACCCCCTCGTCGGCGCGGGT
ACAATCCAAGAACTCAGCGTCGCCACTGCCACATCCAAATTCGGTGTCCC
CCTCACCCTCGACACCTCCTCCTTCTCCTCTTCTTCTTTTCCTTGTTCCT
CCTCTTATTTTTCCTTGAGCAATAAACATAAAGTCATCTCCTACTTCCAT
AAGTACCCCTGGCTGACTGGCCTCCACATACACGTCGGGTCGCAAGGACT
CGGGATGGATCAACTAGCACAAGGCGTTAAGGTCCTCATCGCCCTCACAG
AAGAAGTAGAGGAATCGCTTTCTAAGAATGGGGCAGAGATGGAGGGAAGG
AGAAGGATCACCACGTTGGATATCGGAGGGGGGTTGGCCGCGAATTATCT
ATCGAATCAAGCCATGCCTACTCATGCGCAGCTGGTGGAGGTTTTGAGGG
AGGCGGCTCCTTCTCTTTTCGTTCCGCCCCCACTTTCTTCCTCGAATAGA
AACGGAAGCAATGGCAGCAGTGGCAGCAGTAGCAGTGGTCCTTGCGTGAG
GGTAGTGACGGAGTATGGTCGCTCCCTTACGGCGAAAACTGCCTGGCTTG
CCAGCCGGGTGGAGTACGCTTTTGACAACCAGGAGGAAGACGGGAGGGAG
GGACAAAGGGAGGAAGAGGGAGGACGCGGGACGACAGGATTGCGAACGGC
AATTCTGCATGCGGGTGCCGACGTGTTGTTGCGCGAGTGCTACGTGCCGG
GGAAGTTCTACCATCGATTTACAGTGCACGACAAAGATGGCCACCTGGCC
GAAGTAAAGGAAGGAGGGAAGGAGGAAGGGCAAGTGCACGCACGCACCCC
TCGCCTTCACAATCTGGCTGGGCCTCTGTGCTTTGCGGGGGACGTGATTG
TAAGCGGCATAAAGTTACCAAAAGTTGAGTCAGGAGACTGGCTTGTCGTG
CATGATGTCGGAGGGTACACTCTGGCCTTGTTTTCTCGCTATTGCTCAAG
AGCCGCGCCAGCCGTGGTTGGGTATAGAATAGGAAGAGAGGGAGGGAATG
AGGCAGGGATGGGGGTGACGGTGGAGGTGCTTCAGGGAAGGGAGGCGGGG
GAGAGTGTGTTGGAATTTTGGGGGCCGCGAGGGGAGAGGGAAAGGTAGAA
GAGAGGAAGGGAGGAGGAGTCCTCGTGACCTGGGTGGCTTGTGTGCACTG
TGAATGATTGAGAGTATCATGACGACATTATATTTTTTGTGTGTCAATTT
GGGATGGGCGTGCATGAATAATCGTGTGCTTCAAGCTTGTGGTCTAAATC
TGTCTGGCTTGTTTTCTTTTTTGTTTCTCG

Coding sequence (CDS) from alignment at scaffold_42:37736..39765-

>mRNA_10012 ID=mRNA_10012|Name=jgi.p|Nanoce1779_2|560563|organism=Nannochloropsis oceanica|type=CDS|length=3084bp|location=Sequence derived from alignment at scaffold_42:37736..39765- (Nannochloropsis oceanica)
GAAGAGGGAGGACGCGGGACGACAGGATTGCGAACGGCAATTCTGCATGC
GGGTGCCGACGTGTTGTTGCGCGAGTGCTACGTGCCGGGGAAGTTCTACC
ATCGATTTACAGTGCACGACAAAGATGGCCACCTGGCCGAAGTAAAGGAA
GGAGGGAAGGAGGAAGGGCAAGTGCACGCACGCACCCCTCGCCTTCACAA
TCTGGCTGGGCCTCTGTGCTTTGCGGGGGACGTGATTGTAAGCGGCATAA
AGTTACCAAAAGTTGAGTCAGGAGACTGGCTTGTCGTGCATGATGTCGGA
GGGTACACTCTGGCCTTGTTTTCTCGCTATTGCTCAAGAGCCGCGCCAGC
CGTGGTTGGGTATAGAATAGGAAGAGAGGGAGGGAATGAGGCAGGGATGG
GGGTGACGGTGGAGGTGCTTCAGGGAAGGGAGGCGGGGGAGAGTGTGTTG
GAATTTTGGGGGCCGCGAGGGGAGAGGGAAAGGTAGATGCCGCCCGCCGC
CTACGACTCCCGCCAGGTGCAAATAGTCCTCCAATCATTGCGTGCCCAAG
GTATCCTGCAGCCCTCCAAGGCCCGCGCAGGGGAAGACGTGGTGATTGCC
TATGACTTGGATGCCTTGCATACGGGGTTCGACAGCCTCGTCAAAGCCTT
CCCCCTTCATTTCCTCCACTGCTATGCCATCAAAGCCGCACCCATGGGCT
TCATCCTCCAAGCAGCCATTCGGGCAGGGCTAGGACTCGAAGCTGCTTCA
ATTCTAGAGGTCGAAAGCGCCCTCTTTCACGGCTGTCCCCCGGAAAAGAT
TGTCTTTGACTCCCCCGCCAAGACCTACAAAGAGCTGGACTTCGCCTTGT
CCAAAGGTATTCACATCAACGCCAACACTCTCGAGGAACTTGATCGCATT
GCCTCCATCCTCTCAGCAACATCCTCCTCCACTTTTCCCCCTCCCTCCAT
CGGCTTGCGTATCAACCCCCTCGTCGGCGCGGGTACAATCCAAGAACTCA
GCGTCGCCACTGCCACATCCAAATTCGGTGTCCCCCTCACCCTCGACACC
TCCTCCTTCTCCTCTTCTTCTTTTCCTTGTTCCTCCTCTTATTTTTCCTT
GAGCAATAAACATAAAGTCATCTCCTACTTCCATAAGTACCCCTGGCTGA
CTGGCCTCCACATACACGTCGGGTCGCAAGGACTCGGGATGGATCAACTA
GCACAAGGCGTTAAGGTCCTCATCGCCCTCACAGAAGAAGTAGAGGAATC
GCTTTCTAAGAATGGGGCAGAGATGGAGGGAAGGAGAAGGATCACCACGT
TGGATATCGGAGGGGGGTTGGCCGCGAATTATCTATCGAATCAAGCCATG
CCTACTCATGCGCAGCTGGTGGAGGTTTTGAGGGAGGCGGCTCCTTCTCT
TTTCGTTCCGCCCCCACTTTCTTCCTCGAATAGAAACGGAAGCAATGGCA
GCAGTGGCAGCAGTAGCAGTGGTCCTTGCGTGAGGGTAGTGACGGAGTAT
GGTCGCTCCCTTACGGCGAAAACTGCCTGGCTTGCCAGCCGGGAAGAGGG
AGGACGCGGGACGACAGGATTGCGAACGGCAATTCTGCATGCGGGTGCCG
ACGTGTTGTTGCGCGAGTGCTACGTGCCGGGGAAGTTCTACCATCGATTT
ACAGTGCACGACAAAGATGGCCACCTGGCCGAAGTAAAGGAAGGAGGGAA
GGAGGAAGGGCAAGTGCACGCACGCACCCCTCGCCTTCACAATCTGGCTG
GGCCTCTGTGCTTTGCGGGGGACGTGATTGTAAGCGGCATAAAGTTACCA
AAAGTTGAGTCAGGAGACTGGCTTGTCGTGCATGATGTCGGAGGGTACAC
TCTGGCCTTGTTTTCTCGCTATTGCTCAAGAGCCGCGCCAGCCGTGGTTG
GGTATAGAATAGGAAGAGAGGGAGGGAATGAGGCAGGGATGGGGGTGACG
GTGGAGGTGCTTCAGGGAAGGGAGGCGGGGGAGAGTGTGTTGGAATTTTG
GGGGCCGCGAGGGGAGAGGGAAAGGTAGATGCCGCCCGCCGCCTACGACT
CCCGCCAGGTGCAAATAGTCCTCCAATCATTGCGTGCCCAAGGTATCCTG
CAGCCCTCCAAGGCCCGCGCAGGGGAAGACGTGGTGATTGCCTATGACTT
GGATGCCTTGCATACGGGGTTCGACAGCCTCGTCAAAGCCTTCCCCCTTC
ATTTCCTCCACTGCTATGCCATCAAAGCCGCACCCATGGGCTTCATCCTC
CAAGCAGCCATTCGGGCAGGGCTAGGACTCGAAGCTGCTTCAATTCTAGA
GGTCGAAAGCGCCCTCTTTCACGGCTGTCCCCCGGAAAAGATTGTCTTTG
ACTCCCCCGCCAAGACCTACAAAGAGCTGGACTTCGCCTTGTCCAAAGGT
ATTCACATCAACGCCAACACTCTCGAGGAACTTGATCGCATTGCCTCCAT
CCTCTCAGCAACATCCTCCTCCACTTTTCCCCCTCCCTCCATCGGCTTGC
GTATCAACCCCCTCGTCGGCGCGGGTACAATCCAAGAACTCAGCGTCGCC
ACTGCCACATCCAAATTCGGTGTCCCCCTCACCCTCGACACCTCCTCCTT
CTCCTCTTCTTCTTTTCCTTGTTCCTCCTCTTATTTTTCCTTGAGCAATA
AACATAAAGTCATCTCCTACTTCCATAAGTACCCCTGGCTGACTGGCCTC
CACATACACGTCGGGTCGCAAGGACTCGGGATGGATCAACTAGCACAAGG
CGTTAAGGTCCTCATCGCCCTCACAGAAGAAGTAGAGGAATCGCTTTCTA
AGAATGGGGCAGAGATGGAGGGAAGGAGAAGGATCACCACGTTGGATATC
GGAGGGGGGTTGGCCGCGAATTATCTATCGAATCAAGCCATGCCTACTCA
TGCGCAGCTGGTGGAGGTTTTGAGGGAGGCGGCTCCTTCTCTTTTCGTTC
CGCCCCCACTTTCTTCCTCGAATAGAAACGGAAGCAATGGCAGCAGTGGC
AGCAGTAGCAGTGGTCCTTGCGTGAGGGTAGTGACGGAGTATGGTCGCTC
CCTTACGGCGAAAACTGCCTGGCTTGCCAGCCGG

Synonyms

Publications