jgi.p|Nanoce1779_2|608523, mRNA_10007 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608523
Unique Name	mRNA_10007
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2049
Alignment location	scaffold_42:21565..23613 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608609
Track	FilteredModels2
ProteinId	608523

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:21565..23613 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608523	gene_10007	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608523	mRNA_10007-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10007	CDS_10007	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:21565..23613-
coding sequence from alignment at scaffold_42:21565..23613-

mRNA sequence

>mRNA_10007 ID=mRNA_10007|Name=jgi.p|Nanoce1779_2|608523|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
CGTGCATAAGACGCTCAAAATGGCCTGCTTTTCCCTCCTCTGTGGGTGAC
ATTTTAGGTTCTATACTCGCCTCCTCGTCGACCTCCTGCCTCCACATCCC
ACAGCAAAACGCTCATTAAATGAGACAGGCACCCTTTTGGCGTCCCAGTG
CTTAGCAAGTGTCTCCGTTGCTCCCTTGAGCCCTGGGCATCTCTGCCTAT
CCTTGCCGGCACTCTTTTCATAGAACCTTTTTCATTCATATCTACACACT
CCCTTTCTCGTATGCCCAATACGACGACCATAATATGCAGGAACGCATGC
AAAGACGGGCCATTCTCTCCCCATTGCTGTCGTCCGCCACCCCCATAGCA
GCCAGCCGCCACCTCCGCCACTGCCCGTGCTGCCATCACATGTCATCCTC
TTCCAGCCCTCCGGCATCCCTCCCTTCTCCCCTCCCGGACGACCCTTCCC
TCACCCGCGCCTACATCACGGCTATTCACACTCTCAGTCCGAGTGTGCGC
CAACTTGATCTCCACATTCTGTGTGGCAAGAGCAATTCGCCTCGGGCACC
CTTCTCCTTCCTCGCCGGACAATGGGTTGACTTATACGTTCCAAATCTCC
GACACTGTGGAGGATTCTCCATGATCTCCTCCCCCGAATCACTCCCTCTC
CTCTCACTTGCCATCAAAGGCTCCCCTGCTTCCCGCTCTATCCACGCACG
CTGGGCGCACACATCAGAAGGCGCAAAGGAAGGCGATGTGGTCGGCCTAA
GGGTAGGAGGAGGATTTCACTTTCAAATGACGGAAGAGCACTGGATGAAG
GGGACAAGGCTGGTGCTGCTTGCGGGAGGGGTGGGCATTAATCCACTCAT
GAGCATTTTGGCGCACGTGGTTGGGTGGGTGGAAGAGAGGGAAAAGCAGC
AGGAGGGTGGCAAGGAGAAAGAGGAAGAGGAGGAGGAAGGGATAGAGAAG
GACAAGGGTAGGTTTCAGGTGTCTCTCATTTACAGTGCAGCTATGCGAGC
AGAGCTAATTTTTGAGGAACAGATAAAGGAGTGGACAAAGATGCATGCCT
CGTGGCTGTCCGTGTTGTTTATCGTGACGAGGGAACTTGGAGGGGAGGGG
GCGTGGGACGGACGGAGGGAGAGAATGGATGGGATATTAGTGTGGGAGGC
CGTTGAAGGAGAAGAAGGGGAGAGAGGGAGGGAGAAGGCATTGGTGTACA
TATGTGGGCCGTCGAACATGACAGATGAAATGGAGAGGATCCTGATTGGT
GGGGAAGAGGAAGGAATGGAGGGAGGGAGGCGTTTGAGGAAGGCGCAGGT
GGTAACTGAGAAGTGGTGGTAAGGGTAGAAAAGAGAAGCGAGTGGTGTGA
AGTAGTTCCCCTAAAATCACAATGAAGTCAACGAAAGGTCAGACAAGGAG
TTACTTTCGGCTGCCTCACCACCACCGTTAATTCAATTTTGGTCCTATCG
GAGATTATCAGATCTGAACGCATCGGCAGGACAAGAGGTGGCTCTCGGGT
GGGATTGCAAAAAGATGCCGGCCTGGGTGGACGAGGACCGAGGCTCAAGG
TCCAGACAGGAGAAGGATGGACATCAGTCAGCGAAATGGTTAGATAGACC
CAATATAAGACGATTAAAGGATTCTTCGCCGCGCAGAGGCATCTCCTGCG
CCAAGGGCCATCCGCATCTCGAATTCATCAGGGTTCTGCGAGCTTGTGGC
GTGCGACAAAGCAAGCGTCACATTTTACCTGGGTTGACCACGGCACACGG
ATGAAAGGCTTGGGTCACGGGAAAAAAGATCTGTAATCACCGGGTCTGTA
AACGAAGGACTGATATCCAACTGATCCCCGCACAGCTGTAAGACCTACAT
ATAATCCAGGAGGCTGAAGGATCCTATACGAAATTTTTTTCGTCCAAATA
ATCAAAAGATTCAATACCTGCAAAACTGGTCCCGAGGCAAAAGAAAGGTC
ACCACCACCACCACCAGCAGAGCATCACCACCACCACCACCACCACCGTT
GCCATCACTACAGTCTTCTTTGCGTCCCTTGGGCGTACCTTAGCTGGGT

protein sequence of jgi.p|Nanoce1779_2|608523

>mRNA_10007-protein ID=mRNA_10007-protein|Name=jgi.p|Nanoce1779_2|608523|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MQERMQRRAILSPLLSSATPIAASRHLRHCPCCHHMSSSSSPPASLPSPL
PDDPSLTRAYITAIHTLSPSVRQLDLHILCGKSNSPRAPFSFLAGQWVDL
YVPNLRHCGGFSMISSPESLPLLSLAIKGSPASRSIHARWAHTSEGAKEG
DVVGLRVGGGFHFQMTEEHWMKGTRLVLLAGGVGINPLMSILAHVVGWVE
EREKQQEGGKEKEEEEEEGIEKDKGRFQVSLIYSAAMRAELIFEEQIKEW
TKMHASWLSVLFIVTRELGGEGAWDGRRERMDGILVWEAVEGEEGERGRE
KALVYICGPSNMTDEMERILIGGEEEGMEGGRRLRKAQVVTEKWW*

mRNA from alignment at scaffold_42:21565..23613-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10007 ID=mRNA_10007|Name=jgi.p|Nanoce1779_2|608523|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp|location=Sequence derived from alignment at scaffold_42:21565..23613- (Nannochloropsis oceanica)
CGTGCATAAGACGCTCAAAATGGCCTGCTTTTCCCTCCTCTGTGGGTGAC
ATTTTAGGTTCTATACTCGCCTCCTCGTCGACCTCCTGCCTCCACATCCC
ACAGCAAAACGCTCATTAAATGAGACAGGCACCCTTTTGGCGTCCCAGTG
CTTAGCAAGTGTCTCCGTTGCTCCCTTGAGCCCTGGGCATCTCTGCCTAT
CCTTGCCGGCACTCTTTTCATAGAACCTTTTTCATTCATATCTACACACT
CCCTTTCTCGTATGCCCAATACGACGACCATAATATGCAGGAACGCATGC
AAAGACGGGCCATTCTCTCCCCATTGCTGTCGTCCGCCACCCCCATAGCA
GCCAGCCGCCACCTCCGCCACTGCCCGTGCTGCCATCACATGTCATCCTC
TTCCAGCCCTCCGGCATCCCTCCCTTCTCCCCTCCCGGACGACCCTTCCC
TCACCCGCGCCTACATCACGGCTATTCACACTCTCAGTCCGAGTGTGCGC
CAACTTGATCTCCACATTCTGTGTGGCAAGAGCAATTCGCCTCGGGCACC
CTTCTCCTTCCTCGCCGGACAATGGGTTGACTTATACGTTCCAAATCTCC
GACACTGTGGAGGATTCTCCATGATCTCCTCCCCCGAATCACTCCCTCTC
CTCTCACTTGCCATCAAAGGCTCCCCTGCTTCCCGCTCTATCCACGCACG
CTGGGCGCACACATCAGAAGGCGCAAAGGAAGGCGATGTGGTCGGCCTAA
GGGTAGGAGGAGGATTTCACTTTCAAATGACGGAAGAGCACTGGATGAAG
GGGACAAGGCTGGTGCTGCTTGCGGGAGGGGTGGGCATTAATCCACTCAT
GAGCATTTTGGCGCACGTGGTTGGGTGGGTGGAAGAGAGGGAAAAGCAGC
AGGAGGGTGGCAAGGAGAAAGAGGAAGAGGAGGAGGAAGGGATAGAGAAG
GACAAGGGTAGGTTTCAGGTGTCTCTCATTTACAGTGCAGCTATGCGAGC
AGAGCTAATTTTTGAGGAACAGATAAAGGAGTGGACAAAGATGCATGCCT
CGTGGCTGTCCGTGTTGTTTATCGTGACGAGGGAACTTGGAGGGGAGGGG
GCGTGGGACGGACGGAGGGAGAGAATGGATGGGATATTAGTGTGGGAGGC
CGTTGAAGGAGAAGAAGGGGAGAGAGGGAGGGAGAAGGCATTGGTGTACA
TATGTGGGCCGTCGAACATGACAGATGAAATGGAGAGGATCCTGATTGGT
GGGGAAGAGGAAGGAATGGAGGGAGGGAGGCGTTTGAGGAAGGCGCAGGT
GGTAACTGAGAAGTGGTGGTAAGGGTAGAAAAGAGAAGCGAGTGGTGTGA
AGTAGTTCCCCTAAAATCACAATGAAGTCAACGAAAGGTCAGACAAGGAG
TTACTTTCGGCTGCCTCACCACCACCGTTAATTCAATTTTGGTCCTATCG
GAGATTATCAGATCTGAACGCATCGGCAGGACAAGAGGTGGCTCTCGGGT
GGGATTGCAAAAAGATGCCGGCCTGGGTGGACGAGGACCGAGGCTCAAGG
TCCAGACAGGAGAAGGATGGACATCAGTCAGCGAAATGGTTAGATAGACC
CAATATAAGACGATTAAAGGATTCTTCGCCGCGCAGAGGCATCTCCTGCG
CCAAGGGCCATCCGCATCTCGAATTCATCAGGGTTCTGCGAGCTTGTGGC
GTGCGACAAAGCAAGCGTCACATTTTACCTGGGTTGACCACGGCACACGG
ATGAAAGGCTTGGGTCACGGGAAAAAAGATCTGTAATCACCGGGTCTGTA
AACGAAGGACTGATATCCAACTGATCCCCGCACAGCTGTAAGACCTACAT
ATAATCCAGGAGGCTGAAGGATCCTATACGAAATTTTTTTCGTCCAAATA
ATCAAAAGATTCAATACCTGCAAAACTGGTCCCGAGGCAAAAGAAAGGTC
ACCACCACCACCACCAGCAGAGCATCACCACCACCACCACCACCACCGTT
GCCATCACTACAGTCTTCTTTGCGTCCCTTGGGCGTACCTTAGCTGGGT

Coding sequence (CDS) from alignment at scaffold_42:21565..23613-

>mRNA_10007 ID=mRNA_10007|Name=jgi.p|Nanoce1779_2|608523|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_42:21565..23613- (Nannochloropsis oceanica)
ATGCAGGAACGCATGCAAAGACGGGCCATTCTCTCCCCATTGCTGTCGTC
CGCCACCCCCATAGCAGCCAGCCGCCACCTCCGCCACTGCCCGTGCTGCC
ATCACATGTCATCCTCTTCCAGCCCTCCGGCATCCCTCCCTTCTCCCCTC
CCGGACGACCCTTCCCTCACCCGCGCCTACATCACGGCTATTCACACTCT
CAGTCCGAGTGTGCGCCAACTTGATCTCCACATTCTGTGTGGCAAGAGCA
ATTCGCCTCGGGCACCCTTCTCCTTCCTCGCCGGACAATGGGTTGACTTA
TACGTTCCAAATCTCCGACACTGTGGAGGATTCTCCATGATCTCCTCCCC
CGAATCACTCCCTCTCCTCTCACTTGCCATCAAAGGCTCCCCTGCTTCCC
GCTCTATCCACGCACGCTGGGCGCACACATCAGAAGGCGCAAAGGAAGGC
GATGTGGTCGGCCTAAGGGTAGGAGGAGGATTTCACTTTCAAATGACGGA
AGAGCACTGGATGAAGGGGACAAGGCTGGTGCTGCTTGCGGGAGGGGTGG
GCATTAATCCACTCATGAGCATTTTGGCGCACGTGGTTGGGTGGGTGGAA
GAGAGGGAAAAGCAGCAGGAGGGTGGCAAGGAGAAAGAGGAAGAGGAGGA
GGAAGGGATAGAGAAGGACAAGGGTAGGTTTCAGGTGTCTCTCATTTACA
GTGCAGCTATGCGAGCAGAGCTAATTTTTGAGGAACAGATAAAGGAGTGG
ACAAAGATGCATGCCTCGTGGCTGTCCGTGTTGTTTATCGTGACGAGGGA
ACTTGGAGGGGAGGGGGCGTGGGACGGACGGAGGGAGAGAATGGATGGGA
TATTAGTGTGGGAGGCCGTTGAAGGAGAAGAAGGGGAGAGAGGGAGGGAG
AAGGCATTGGTGTACATATGTGGGCCGTCGAACATGACAGATGAAATGGA
GAGGATCCTGATTGGTGGGGAAGAGGAAGGAATGGAGGGAGGGAGGCGTT
TGAGGAAGGCGCAGGTGGTAACTGAGAAGTGGTGGTAA

Synonyms

Publications