jgi.p|Nanoce1779_2|608511, mRNA_10005 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608511
Unique NamemRNA_10005
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1116
Alignment locationscaffold_42:17931..19224 -

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Properties
Property NameValue
TranscriptId608597
TrackFilteredModels2
ProteinId608511
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:17931..19224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608511gene_10005Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608511mRNA_10005-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10005CDS_10005Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10005 ID=mRNA_10005|Name=jgi.p|Nanoce1779_2|608511|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
ACCCCTGCTCCCGTCCCCGCTGCCCCTCCTCCTCCCTCATGACTCTCACG
CGCTCCACATCGGGTCGAGGCCGAAAAGGGAGTGGTCGCAACAGAGGAGC
CTGCGCCCAGACGGAGAATAGTCCTGTGCTCCTGATGATTGTGCCACTCC
TGATAGACTAGCTCCCCTTCGCCTGAGAAGAGAGAAAGGCCATCGCGTCG
GTCGTGCATGTCGAAGCGGAGCCGGTACCTGGCTTGCCACTGTGGCGTGA
CTATCAACAAACCAGGCTCCACAAGCCCTCGACCGCGATACACACACACG
CCATGATAGGTCCTCTGCCCCCCCGCAAGGGGACGAGGAGGACACCTAGA
GGATGCCAGGAAACACCGAGTCACTGGCCACAAGGCCGAGACAATAGGGG
CCCAAAGCTCATCGACAGCGGCAAGAGAAGCCCACCTGGAGGATACCTCG
CGGAGAGACCCCAACTGCTCGCGCGCATACCTGTGCGAACCAACGAATGC
ACCTTCCTCTCTCCGTACTTCCGTCCCGCCCCTCCTCCCGTCTTCGTCAT
CCTCTTTCTCTTCATCCATTTCGGTGCTCCTGCTGCCGCTAAGGAATGTG
AATATTTTGATGAGCACTCCGTCGGGCAGGAAGGCAATGGTAGGGAAAGA
GTGGGGGGATGCAATAGGGCATCTGATGTAGTGGTTGTAGTGGTGATGGG
GAACACCGGATGGAGGGGACGAGGGACCAGCCGTCGTGGTGGGTTGTGTG
AGTTGCGAAGGGAAGGAGAGCGGGGCAAGAGACAGGCTCTCCATCGCGGC
CGTATTGTCATTTCCGACATTCATGCCACTTCTGCTTGTGTTTGTAAACG
GATTCTCCGACGAGGCCCGGAAGACGAGAGGAGCGAGCTCTCCTAACGCG
AAGCAGGCCTCGCGCAGCGTCGCGACATTGGAGGGAGGGAGAGTGTGGGC
GTGAAGAGATGAGCGCACCGCGTCGCCGTGCACGGCAAGGAGGAATGTTG
ACACCCGCAGGGATGCTAAGAGGTCCGCGTAAAGCGGTGGTGGTTCTGAG
GCCATACCGGCTTCGTGCCGTTGGCGAGGCGGCAATGATGACGAGGACGG
GCAGATTTCTTGTCCT
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protein sequence of jgi.p|Nanoce1779_2|608511

>mRNA_10005-protein ID=mRNA_10005-protein|Name=jgi.p|Nanoce1779_2|608511|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MIGPLPPRKGTRRTPRGCQETPSHWPQGRDNRGPKLIDSGKRSPPGGYLA
ERPQLLARIPVRTNECTFLSPYFRPAPPPVFVILFLFIHFGAPAAAKECE
YFDEHSVGQEGNGRERVGGCNRASDVVVVVVMGNTGWRGRGTSRRGGLCE
LRREGERGKRQALHRGRIVISDIHATSACVCKRILRRGPEDERSELS*
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mRNA from alignment at scaffold_42:17931..19224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10005 ID=mRNA_10005|Name=jgi.p|Nanoce1779_2|608511|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp|location=Sequence derived from alignment at scaffold_42:17931..19224- (Nannochloropsis oceanica)
ACCCCTGCTCCCGTCCCCGCTGCCCCTCCTCCTCCCTCATGACTCTCACG
CGCTCCACATCGGGTCGAGGCCGAAAAGGGAGTGGTCGCAACAGAGGAGC
CTGCGCCCAGACGGAGAATAGTCCTGTGCTCCTGATGATTGTGCCACTCC
TGATAGACTAGCTCCCCTTCGCCTGAGAAGAGAGAAAGGCCATCGCGTCG
GTCGTGCATGTCGAAGCGGAGCCGGTACCTTTACGGACAGAGGAATGGAG
GGGAAAAGAAAGGCAGGGAGGGATGATTAGGTGAGTATTGTCTGAGGTAC
ACGGAAGAAAAGAGAGAGGCATCACCCCCTTCTCCTACTGTTTGTGCCCC
CTGCCTCCCTCTCTCCCTCCCTTTCTCTCCCTCCTGCTTCCCCCGCCTCT
TCCCACCTGGCTTGCCACTGTGGCGTGACTATCAACAAACCAGGCTCCAC
AAGCCCTCGACCGCGATACACACACACGCCATGATAGGTCCTCTGCCCCC
CCGCAAGGGGACGAGGAGGACACCTAGAGGATGCCAGGAAACACCGAGTC
ACTGGCCACAAGGCCGAGACAATAGGGGCCCAAAGCTCATCGACAGCGGC
AAGAGAAGCCCACCTGGAGGATACCTCGCGGAGAGACCCCAACTGCTCGC
GCGCATACCTGTGCGAACCAACGAATGCACCTTCCTCTCTCCGTACTTCC
GTCCCGCCCCTCCTCCCGTCTTCGTCATCCTCTTTCTCTTCATCCATTTC
GGTGCTCCTGCTGCCGCTAAGGAATGTGAATATTTTGATGAGCACTCCGT
CGGGCAGGAAGGCAATGGTAGGGAAAGAGTGGGGGGATGCAATAGGGCAT
CTGATGTAGTGGTTGTAGTGGTGATGGGGAACACCGGATGGAGGGGACGA
GGGACCAGCCGTCGTGGTGGGTTGTGTGAGTTGCGAAGGGAAGGAGAGCG
GGGCAAGAGACAGGCTCTCCATCGCGGCCGTATTGTCATTTCCGACATTC
ATGCCACTTCTGCTTGTGTTTGTAAACGGATTCTCCGACGAGGCCCGGAA
GACGAGAGGAGCGAGCTCTCCTAACGCGAAGCAGGCCTCGCGCAGCGTCG
CGACATTGGAGGGAGGGAGAGTGTGGGCGTGAAGAGATGAGCGCACCGCG
TCGCCGTGCACGGCAAGGAGGAATGTTGACACCCGCAGGGATGCTAAGAG
GTCCGCGTAAAGCGGTGGTGGTTCTGAGGCCATACCGGCTTCGTGCCGTT
GGCGAGGCGGCAATGATGACGAGGACGGGCAGATTTCTTGTCCT
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Coding sequence (CDS) from alignment at scaffold_42:17931..19224-

>mRNA_10005 ID=mRNA_10005|Name=jgi.p|Nanoce1779_2|608511|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_42:17931..19224- (Nannochloropsis oceanica)
ATGATAGGTCCTCTGCCCCCCCGCAAGGGGACGAGGAGGACACCTAGAGG
ATGCCAGGAAACACCGAGTCACTGGCCACAAGGCCGAGACAATAGGGGCC
CAAAGCTCATCGACAGCGGCAAGAGAAGCCCACCTGGAGGATACCTCGCG
GAGAGACCCCAACTGCTCGCGCGCATACCTGTGCGAACCAACGAATGCAC
CTTCCTCTCTCCGTACTTCCGTCCCGCCCCTCCTCCCGTCTTCGTCATCC
TCTTTCTCTTCATCCATTTCGGTGCTCCTGCTGCCGCTAAGGAATGTGAA
TATTTTGATGAGCACTCCGTCGGGCAGGAAGGCAATGGTAGGGAAAGAGT
GGGGGGATGCAATAGGGCATCTGATGTAGTGGTTGTAGTGGTGATGGGGA
ACACCGGATGGAGGGGACGAGGGACCAGCCGTCGTGGTGGGTTGTGTGAG
TTGCGAAGGGAAGGAGAGCGGGGCAAGAGACAGGCTCTCCATCGCGGCCG
TATTGTCATTTCCGACATTCATGCCACTTCTGCTTGTGTTTGTAAACGGA
TTCTCCGACGAGGCCCGGAAGACGAGAGGAGCGAGCTCTCCTAA
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Synonyms
Publications