jgi.p|Nanoce1779_2|674364, mRNA_10003 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674364
Unique NamemRNA_10003
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2094
Alignment locationscaffold_42:6910..9213 -

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Properties
Property NameValue
TranscriptId674450
TrackFilteredModels2
ProteinId674364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:6910..9213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674364gene_10003Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674364mRNA_10003-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10003CDS_10003Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10003 ID=mRNA_10003|Name=jgi.p|Nanoce1779_2|674364|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp
ACTTTCTATTGATCTTTTATTTCTTTTTTAAGCTTTTTGATTTATTTCCT
TTGGGGATGTGGGAATATTTGGTCGATCTGATTTTGACTGGTCTTTCTGT
GACAGCATGTCTTCATCTCCGTAAGAGGGTGGCTCCCGCACCATGTCTTC
CCTCGCACGTGCATACCCCTCTTCATCTCTGAAGCTGAGACAAGGGATGA
TGCCTCTGCCAGGACCTTCATATGAAGGTTGTTAAGAAAACGATTTCATG
AAGAAAACGTGCTTCTAACGGGCCCTTACCATGACGAACGGTACACGCAT
CGACAATCCACATGATGTACGGGGGTCAGAATTTAGGCTTACTCAGCCCC
CTTCGGGCGCACCTGGTCGCAGCTCCATGAGCTTTAAATGGTTATTTTAT
TTGTAGCATTAAGATGTGCATGTACAGGAGGACAAGCCCTTCCTAAGTGC
TTGTGCCCAGAGCTTTGACCGAGCAAAGGTTCGATGCCCCTCTTCTTTCA
TGTCCCCACTTTTCCTCGAGTCCTTAAACATGTGACAGAAGACGCGTCTC
ACCAAATGGTTGAATTATGAACGGTTCTTTATCTTTCTAATTCCATATGT
TTGATGAGTGCGAGGCCTAATAGCGTGACAATAACTCCCATGGCATGCTG
ACTCTGTCTCTGCGGGGAATCGCCTTGAATGATGATCTCTGTCGGTGACG
CAGAGTGGAGGCGACGTCAGACGCGCAACAGCAGGAGCTCGCTCTAGAAG
AGGAGGTTCACTTAACACCGTTTGTCTGACTTCCTGTCTCGCATGTGGCC
CTTCGGTTCTTTGTATTATGTTTGTTATATTCTCGTGTAGCAATGAACTT
TTCAAGCTCATTTTGGCCTCCCCAACTTGGACTCAGCCCAGCCAAGCCGT
GTGCTGCGTCGCGGGCTAGACATTGCATTGCGGCCCCCAACTCCAGTAGG
CCCTTGGTACGCCCGCGATTAGCTTTCCCCTGCTTGCATGTCGAAGGGAA
ATCATATGAAAAGAAACACCTGCACAACCCACGCTCATCTTTCTGCATAC
CGCTTCCACACCCTTTGACAGCCACCACTCAGAGTAAATCGCGTCACCCC
TACGCGAGGACTCACCCAGCAACACCAGCAAACAACATACGACAAGCCAT
GCGCTACTATATCACCATCTTTGCACTAGCCCCTGCGGTTTCCTTGCTGC
CTTTCGAGCATGTTCAGGCTCACTACCTGCGTATCGACAGCAACAAAGAG
AAGAGCCTGCAATATGACAGTACCCACGACGAATACGGCCGCCGCTTGCG
CAGCCGTCAGCTTTCCACTCCCATCGGCCACGGCTGGGCCTTTGGGGAAG
ACAGCAAAGAGCAGGCACCACGAGCAGCAGCAGCAGCAGTCGAGAAAGGT
GATAAGGCCACTCCTATGGGCCATGGGTGGGCTATTGGCGAAGACGAAAA
AAAGGAGATCGTGACAGCACATGTTATTGCTGCTGCTGCCGCTGCGGCTT
TGGACGGAGACAAAGTACACACACCGATGGGGCATGGCTGGAGCTTTGAA
GGCCCTGCCAAGGGTATGGATGTGGCCTTCCCGTAGATGAAGAATGTGAG
AATGAGAGAAGAAGAGGCCAGGTGAGCTTGACGAGAGATACTCCATTTAT
GTGAAGGAGTAATAGTGAACGCGCAGTACATACAGAGCACAGAGTGGATA
GCAATGAGAGTGCCGGATTGAAACCCAAAGTTAGCCGCCTTCATATCGCA
ATGCCTTTGTTTCACAGTTCTCGGAACATGGGTTAGAGAGACCGCAGTGG
GAACGGCGAGCAAAGCTAGCGTAGCACGTTAGCCAATAGCCCCTGGAAGT
TCTTCAAAAACCACACATTCCGAAAAGCGTCAGCTGTGCCCTGTAAATAT
TTTGATTACGAGGTGCGATGAGGTTCGAACACCATAACAGGTCCATGGAT
GTTCCCAGGCGCAAAAAGGAAATATAATTCACCCGTAAAAAGGGAAGGGA
AAACAATTACCGAGAGATTTGTTGGACAAAAGTGAAGAGGAAAACAAACA
AACCATGCGAGCTTTTGTTTTAAAGAACAAGTGTGGAGTTGAGA
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protein sequence of jgi.p|Nanoce1779_2|674364

>mRNA_10003-protein ID=mRNA_10003-protein|Name=jgi.p|Nanoce1779_2|674364|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MNFSSSFWPPQLGLSPAKPCAASRARHCIAAPNSSRPLVRPRLAFPCLHV
EGKSYEKKHLHNPRSSFCIPLPHPLTATTQSKSRHPYARTHPATPANNIR
QAMRYYITIFALAPAVSLLPFEHVQAHYLRIDSNKEKSLQYDSTHDEYGR
RLRSRQLSTPIGHGWAFGEDSKEQAPRAAAAAVEKGDKATPMGHGWAIGE
DEKKEIVTAHVIAAAAAAALDGDKVHTPMGHGWSFEGPAKGMDVAFP*
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mRNA from alignment at scaffold_42:6910..9213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10003 ID=mRNA_10003|Name=jgi.p|Nanoce1779_2|674364|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp|location=Sequence derived from alignment at scaffold_42:6910..9213- (Nannochloropsis oceanica)
ACTTTCTATTGATCTTTTATTTCTTTTTTAAGCTTTTTGATTTATTTCCT
TTGGGGATGTGGGAATATTTGGTCGATCTGATTTTGACTGGTCTTTCTGT
GACAGCATGTCTTCATCTCCGTAAGAGGGTGGCTCCCGCACCATGTCTTC
CCTCGCACGTGCATACCCCTCTTCATCTCTGAAGCTGAGACAAGGGATGA
TGCCTCTGCCAGGACCTTCATATGAAGGTTGTTAAGAAAACGATTTCATG
AAGAAAACGTGCTTCTAACGGGCCCTTACCATGACGAACGGTACACGCAT
CGACAATCCACATGATGTACGGGGGTCAGAATTTAGGCTTACTCAGCCCC
CTTCGGGCGCACCTGGTCGCAGCTCCATGAGCTTTAAATGGTTATTTTAT
TTGTAGCATTAAGATGTGCATGTACAGGAGGACAAGCCCTTCCTAAGTGC
TTGTGCCCAGAGCTTTGACCGAGCAAAGGTTCGATGCCCCTCTTCTTTCA
TGTCCCCACTTTTCCTCGAGTCCTTAAACATGTGACAGAAGACGCGTCTC
ACCAAATGGTTGAATTATGAACGGTTCTTTATCTTTCTAATTCCATATGT
TTGATGAGTGCGAGGCCTAATAGCGTGACAATAACTCCCATGGCATGCTG
ACTCTGTCTCTGCGGGGAATCGCCTTGAATGATGATCTCTGTCGGTGACG
CAGAGTGGAGGCGACGTCAGACGCGCAACAGCAGGAGCTCGCTCTAGAAG
AGGAGGTTCACTTAACACCGTTTGTCTGACTTCCTGTCTCGCATGTGGCC
CTTCGGTTCTTTGTATTATGTTTGTTATATTCTCGTGTAGCAATGAACTT
TTCAAGCTCATTTTGGCCTCCCCAACTTGGACTCAGCCCAGCCAAGCCGT
GTGCTGCGTCGCGGGCTAGACATTGCATTGCGGCCCCCAACTCCAGTAGG
CCCTTGGTACGCCCGCGATTAGCTTTCCCCTGCTTGCATGTCGAAGGGAA
ATCATATGAAAAGAAACACCTGCACAACCCACGCTCATCTTTCTGCATAC
CGCTTCCACACCCTTTGACAGCCACCACTCAGAGTAAATCGCGTCACCCC
TACGCGAGGACTCACCCAGCAACACCAGCAAACAACATACGACAAGCCAT
GCGCTACTATATCACCATCTTTGCACTAGCCCCTGCGGTTTCCTTGCTGC
CTTTCGAGCATGTTCAGGCTCACTACCTGCGTATCGACAGCAACAAAGGT
GAGTGTGCCGCAATTCTTACCCTGACCCTCTATTTGTTGTACCCTCGCTT
TGAGCGCCTTAGCTTCACGCCCTTGCCGACCAGCATATCTCTCTCCCTCC
TTTCTTTCTATTTCTCTCTCTCGCTTCATATGTCCCTTTCCTTCATTCGA
CGGATCTACAGACACAAACTCCAAAACACTTATCACCTTACCCCATCCCA
CCACACAGAGAAGAGCCTGCAATATGACAGTACCCACGACGAATACGGCC
GCCGCTTGCGCAGCCGTCAGCTTTCCACTCCCATCGGCCACGGCTGGGCC
TTTGGGGAAGACAGCAAAGAGCAGGCACCACGAGCAGCAGCAGCAGCAGT
CGAGAAAGGTGATAAGGCCACTCCTATGGGCCATGGGTGGGCTATTGGCG
AAGACGAAAAAAAGGAGATCGTGACAGCACATGTTATTGCTGCTGCTGCC
GCTGCGGCTTTGGACGGAGACAAAGTACACACACCGATGGGGCATGGCTG
GAGCTTTGAAGGCCCTGCCAAGGGTATGGATGTGGCCTTCCCGTAGATGA
AGAATGTGAGAATGAGAGAAGAAGAGGCCAGGTGAGCTTGACGAGAGATA
CTCCATTTATGTGAAGGAGTAATAGTGAACGCGCAGTACATACAGAGCAC
AGAGTGGATAGCAATGAGAGTGCCGGATTGAAACCCAAAGTTAGCCGCCT
TCATATCGCAATGCCTTTGTTTCACAGTTCTCGGAACATGGGTTAGAGAG
ACCGCAGTGGGAACGGCGAGCAAAGCTAGCGTAGCACGTTAGCCAATAGC
CCCTGGAAGTTCTTCAAAAACCACACATTCCGAAAAGCGTCAGCTGTGCC
CTGTAAATATTTTGATTACGAGGTGCGATGAGGTTCGAACACCATAACAG
GTCCATGGATGTTCCCAGGCGCAAAAAGGAAATATAATTCACCCGTAAAA
AGGGAAGGGAAAACAATTACCGAGAGATTTGTTGGACAAAAGTGAAGAGG
AAAACAAACAAACCATGCGAGCTTTTGTTTTAAAGAACAAGTGTGGAGTT
GAGA
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Coding sequence (CDS) from alignment at scaffold_42:6910..9213-

>mRNA_10003 ID=mRNA_10003|Name=jgi.p|Nanoce1779_2|674364|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_42:6910..9213- (Nannochloropsis oceanica)
AGAAGAGCCTGCAATATGACAGTACCCACGACGAATACGGCCGCCGCTTG
CGCAGCCGTCAGCTTTCCACTCCCATCGGCCACGGCTGGGCCTTTGGGGA
AGACAGCAAAGAGCAGGCACCACGAGCAGCAGCAGCAGCAGTCGAGAAAG
GTGATAAGGCCACTCCTATGGGCCATGGGTGGGCTATTGGCGAAGACGAA
AAAAAGGAGATCGTGACAGCACATGTTATTGCTGCTGCTGCCGCTGCGGC
TTTGGACGGAGACAAAGTACACACACCGATGGGGCATGGCTGGAGCTTTG
AAGGCCCTGCCAAGGGTATGGATGTGGCCTTCCCGTAGATGAACTTTTCA
AGCTCATTTTGGCCTCCCCAACTTGGACTCAGCCCAGCCAAGCCGTGTGC
TGCGTCGCGGGCTAGACATTGCATTGCGGCCCCCAACTCCAGTAGGCCCT
TGGTACGCCCGCGATTAGCTTTCCCCTGCTTGCATGTCGAAGGGAAATCA
TATGAAAAGAAACACCTGCACAACCCACGCTCATCTTTCTGCATACCGCT
TCCACACCCTTTGACAGCCACCACTCAGAGTAAATCGCGTCACCCCTACG
CGAGGACTCACCCAGCAACACCAGCAAACAACATACGACAAGCCATGCGC
TACTATATCACCATCTTTGCACTAGCCCCTGCGGTTTCCTTGCTGCCTTT
CGAGCATGTTCAGGCTCACTACCTGCGTATCGACAGCAACAAAGAGAAGA
GCCTGCAATATGACAGTACCCACGACGAATACGGCCGCCGCTTGCGCAGC
CGTCAGCTTTCCACTCCCATCGGCCACGGCTGGGCCTTTGGGGAAGACAG
CAAAGAGCAGGCACCACGAGCAGCAGCAGCAGCAGTCGAGAAAGGTGATA
AGGCCACTCCTATGGGCCATGGGTGGGCTATTGGCGAAGACGAAAAAAAG
GAGATCGTGACAGCACATGTTATTGCTGCTGCTGCCGCTGCGGCTTTGGA
CGGAGACAAAGTACACACACCGATGGGGCATGGCTGGAGCTTTGAAGGCC
CTGCCAAGGGTATGGATGTGGCCTTCCCGTAGATGAACTTTTCAAGCTCA
TTTTGGCCTCCCCAACTTGGACTCAGCCCAGCCAAGCCGTGTGCTGCGTC
GCGGGCTAGACATTGCATTGCGGCCCCCAACTCCAGTAGGCCCTTGGTAC
GCCCGCGATTAGCTTTCCCCTGCTTGCATGTCGAAGGGAAATCATATGAA
AAGAAACACCTGCACAACCCACGCTCATCTTTCTGCATACCGCTTCCACA
CCCTTTGACAGCCACCACTCAGAGTAAATCGCGTCACCCCTACGCGAGGA
CTCACCCAGCAACACCAGCAAACAACATACGACAAGCCATGCGCTACTAT
ATCACCATCTTTGCACTAGCCCCTGCGGTTTCCTTGCTGCCTTTCGAGCA
TGTTCAGGCTCACTACCTGCGTATCGACAGCAACAAAG
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Synonyms
Publications