jgi.p|Nanoce1779_2|307091, mRNA_10002 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|307091
Unique Name	mRNA_10002
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1590
Alignment location	scaffold_42:3497..5244 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	307177
Track	FilteredModels2
ProteinId	307091

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:3497..5244 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|307091	gene_10002	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|307091	mRNA_10002-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10002	CDS_10002	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:3497..5244+
coding sequence from alignment at scaffold_42:3497..5244+

mRNA sequence

>mRNA_10002 ID=mRNA_10002|Name=jgi.p|Nanoce1779_2|307091|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
AAATCCCACAGATCTTGTACGAACAACATCACACCATACCAAATCAACAA
GGCAGCAAATGATCCGCATCATCACCCGCGTCTGCATGGCCACTGCAGCA
GTTCTTCTTCTCGCAGTTCCCATGGAGGCCAACTACCTGCGTCGTGTACA
GATGGTCGCCACCGAGGAGGCCGTGGAAGGCGACAAAGCTCCCCTTTCCC
ACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAG
TCTGCTGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTG
GGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCTG
CTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTAC
GGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCGGCTGCGCC
TGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTG
CTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCTGCTGCGCCTGAGGAG
GGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGG
CTCCCGCAAGGAGGTGATCGAGTCTGCGGCTGCGCCTGAGGAGGGCGACA
AGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGC
AAGGAGGTGATCGAGTCTGCTGCTGCGCCTGAGGAGGGCGACAAGGCTCC
TCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGG
TGATCGAGTCTGCGGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCC
CGCGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGAGGTGGG
CACAGTCGCCTTTCCTTAATTTGTTGTGAAAAGATGAAGGAAGAATTGGA
GGATAGATGGAGAAGTAGAGAGAAGGGGATGACAGCGTATGTGCCCTTGC
ACCTATCATGATAGTAACCGAGGCGCGAAAGCTGAAACATGGTGCGGAGG
AAGAGAAGGATAACGGACTGACAAGTGGCCCACAATCAAAACGATGGCGA
CCGCGGAAAGCGAGAGAGGAAGACAATCAGGGGAAGGGGGGGAAAGGGGC
AGGAGCAGGTCGAGAGACGTGATGGGGAAGAAGGATAAGGGTAGGGGGTA
ATGGTATTTGCGTACCCTCCCTTTTCTCCCTCCCGCTTCCTCGTGTCTTC
TCGTATGTGAGGCGTGTACATAGATAACATTTACTTTTCTCTCCGTGGCG
AGCGAGACAGACATAATCGAAGCATTTGAGATACTTCTGTGAGCGTAAAA
GAAAGAGAGCCGGGCAGTAGACGCGAGAAGATAAGGACGACAAGGTGCTT
GTTGAGAGCACGGGATGTGTATGCTCGTGAGCAGCATCAGCAACAACCAC
AAAAAAACATGGAAGGCCCTTTCGCCCCCGTACGGAAATGCTGGACCTGC
GGGCGGCCGGGCGGCGGTGGCATGTGATTAACCGAGGAATTTCTAACATA
ATAAGGGATGAATTGAACAAAGAATGACGGGTAATTAGTT

protein sequence of jgi.p|Nanoce1779_2|307091

>mRNA_10002-protein ID=mRNA_10002-protein|Name=jgi.p|Nanoce1779_2|307091|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MIRIITRVCMATAAVLLLAVPMEANYLRRVQMVATEEAVEGDKAPLSHGW
AYGGASGSRKEVIESAAAPEEGDKAPLSHGWAYGGASGSRKEVIESAAAP
EEGDKAPLSHGWAYGGASGSRKEVIESAAAPEEGDKAPLSHGWAYGGASG
SRKEVIESAAAPEEGDKAPLSHGWAYGGASGSRKEVIESAAAPEEGDKAP
LSHGWAYGGASGSRKEVIESAAAPEEGDKAPLSHGWAYGGASGSRKEVIE
SAAAPEEGDKAPLSRGWAYGGASGSRKEEVGTVAFP*

mRNA from alignment at scaffold_42:3497..5244+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10002 ID=mRNA_10002|Name=jgi.p|Nanoce1779_2|307091|organism=Nannochloropsis oceanica|type=mRNA|length=1748bp|location=Sequence derived from alignment at scaffold_42:3497..5244+ (Nannochloropsis oceanica)
AAATCCCACAGATCTTGTACGAACAACATCACACCATACCAAATCAACAA
GGCAGCAAATGATCCGCATCATCACCCGCGTCTGCATGGCCACTGCAGCA
GTTCTTCTTCTCGCAGTTCCCATGGAGGCCAACTACCTGCGTCGTGTACA
GATGGTCGCCACCGAGGGTAGGTTACTCAGTTTGGGGTGGAGGAGTATGA
CGAGGTCCAGTTGTTCTGTTGTTCCCAGTCGGGCCGAGTCAGGTGCAAAT
AAGCGCTCGATCGGTGTAAGCCAGCCTCACACACTTACATCGCACCCTGC
ACTCACGCACACCTATAAATCACAGAGGCCGTGGAAGGCGACAAAGCTCC
CCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGG
TGATCGAGTCTGCTGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCC
CACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGA
GTCTGCTGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCT
GGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCG
GCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTA
CGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCTGCTGCGC
CTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGT
GCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCGGCTGCGCCTGAGGA
GGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGG
GCTCCCGCAAGGAGGTGATCGAGTCTGCTGCTGCGCCTGAGGAGGGCGAC
AAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCG
CAAGGAGGTGATCGAGTCTGCGGCTGCGCCTGAGGAGGGCGACAAGGCTC
CTCTTTCCCGCGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAG
GAGGTGGGCACAGTCGCCTTTCCTTAATTTGTTGTGAAAAGATGAAGGAA
GAATTGGAGGATAGATGGAGAAGTAGAGAGAAGGGGATGACAGCGTATGT
GCCCTTGCACCTATCATGATAGTAACCGAGGCGCGAAAGCTGAAACATGG
TGCGGAGGAAGAGAAGGATAACGGACTGACAAGTGGCCCACAATCAAAAC
GATGGCGACCGCGGAAAGCGAGAGAGGAAGACAATCAGGGGAAGGGGGGG
AAAGGGGCAGGAGCAGGTCGAGAGACGTGATGGGGAAGAAGGATAAGGGT
AGGGGGTAATGGTATTTGCGTACCCTCCCTTTTCTCCCTCCCGCTTCCTC
GTGTCTTCTCGTATGTGAGGCGTGTACATAGATAACATTTACTTTTCTCT
CCGTGGCGAGCGAGACAGACATAATCGAAGCATTTGAGATACTTCTGTGA
GCGTAAAAGAAAGAGAGCCGGGCAGTAGACGCGAGAAGATAAGGACGACA
AGGTGCTTGTTGAGAGCACGGGATGTGTATGCTCGTGAGCAGCATCAGCA
ACAACCACAAAAAAACATGGAAGGCCCTTTCGCCCCCGTACGGAAATGCT
GGACCTGCGGGCGGCCGGGCGGCGGTGGCATGTGATTAACCGAGGAATTT
CTAACATAATAAGGGATGAATTGAACAAAGAATGACGGGTAATTAGTT

Coding sequence (CDS) from alignment at scaffold_42:3497..5244+

>mRNA_10002 ID=mRNA_10002|Name=jgi.p|Nanoce1779_2|307091|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_42:3497..5244+ (Nannochloropsis oceanica)
ATGATCCGCATCATCACCCGCGTCTGCATGGCCACTGCAGCAGTTCTTCT
TCTCGCAGTTCCCATGGAGGCCAACTACCTGCGTCGTGTACAGATGGTCG
CCACCGAGGAGGCCGTGGAAGGCGACAAAGCTCCCCTTTCCCACGGCTGG
GCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCTGC
TGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACG
GTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCTGCTGCGCCT
GAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGC
TTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCGGCTGCGCCTGAGGAGG
GCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGC
TCCCGCAAGGAGGTGATCGAGTCTGCTGCTGCGCCTGAGGAGGGCGACAA
GGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCA
AGGAGGTGATCGAGTCTGCGGCTGCGCCTGAGGAGGGCGACAAGGCTCCT
CTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGT
GATCGAGTCTGCTGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCC
ACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAG
TCTGCGGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCGCGGCTG
GGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGAGGTGGGCACAGTCG
CCTTTCCTTAAATGATCCGCATCATCACCCGCGTCTGCATGGCCACTGCA
GCAGTTCTTCTTCTCGCAGTTCCCATGGAGGCCAACTACCTGCGTCGTGT
ACAGATGGTCGCCACCGAGGAGGCCGTGGAAGGCGACAAAGCTCCCCTTT
CCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATC
GAGTCTGCTGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGG
CTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTG
CTGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCG
TACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCGGCTGC
GCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTG
GTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCTGCTGCGCCTGAG
GAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTC
GGGCTCCCGCAAGGAGGTGATCGAGTCTGCGGCTGCGCCTGAGGAGGGCG
ACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCC
CGCAAGGAGGTGATCGAGTCTGCTGCTGCGCCTGAGGAGGGCGACAAGGC
TCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGG
AGGTGATCGAGTCTGCGGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTT
TCCCGCGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGAGGT
GGGCACAGTCGCCTTTCCTTAA

Synonyms

Publications