jgi.p|Nanoce1779_2|668127, mRNA_1 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668127
Unique NamemRNA_1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length882
Alignment locationscaffold_3:84..1665 -

Link to JBrowse

Properties
Property NameValue
TranscriptId668213
TrackFilteredModels2
ProteinId668127
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:84..1665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668127gene_1Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668127mRNA_1-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1CDS_1Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1 ID=mRNA_1|Name=jgi.p|Nanoce1779_2|668127|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
AGGATGGAATGTACCTTTTGGCGAAGGTGCTTGAGGCGGGTGTGGAGGAG
GCTACAAGCCAAGGCAGTTGCTTGGCATCCACGCACCCTCAGTATGTAAA
AACTTGCAATTATCGTACACTACATGCCCACGCTTGAGCCAGGCATAGTT
GTAGGGCTGGAAGGCTAGCCAATCGAGCGCCTTTCTGCACTCGCTTGATT
TTGCTCCCCGGAGTACGCGCCAAAAATAGAAAAGAGCACACACGTCGAGC
ACACATACCACACCACATCCGCAGTCTCCTTCCCGTCCCTATCTCCACCA
TCCACTAGGACAGATGTATTCATTTCTCCCTGTAATCTCGACAGCCGGCG
CTCATCGCCCACCATTCCCCTGCCCCCTCCCTCACGGCCATCATCTCAAC
AGACGCACACGACCCGAATCATCATGGGCAACAAAGGCAGTACGCCGGCC
GAAGGAGACGAGGCTGAGATCCCCACAGTGCCGGCTGCTACCCACCACGC
GCCTTCCACAGATGCCGTGCCACCGCCGCCGCTGCCAGCGGAAAAAAAAG
CGGGACTGGCCAAGTTGCTGACCCCAGCGGACCTCCTGAAGCGAGGAGGG
GGAGGGCGATCGCCCTCCCCACCTCCCCCTGCGTCGAAGCCTGTCGCTCC
TGCTGCATCGAAAGGCATCAAGGCCATCTCGATCAGTGAGCTGGAGGCGC
GCGTGGGAGGTGGGCGACCAGTAGAGGGGGGAAAGGGCATAGGGCGGGGG
GGAAGGGCCGGGTTTGGCGCTGGGGGAGGAGGGGAGGAGGAGGGGAGAGA
GGGTGGAGGGGCAGGAATTCGGACGGTAGTGGAAGTGCAGGACGCAACGA
AAGATCTGAAGAATTTGCTGAAGCTTGGATGA
back to top

protein sequence of jgi.p|Nanoce1779_2|668127

>mRNA_1-protein ID=mRNA_1-protein|Name=jgi.p|Nanoce1779_2|668127|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MGNKGSTPAEGDEAEIPTVPAATHHAPSTDAVPPPPLPAEKKAGLAKLLT
PADLLKRGGGGRSPSPPPPASKPVAPAASKGIKAISISELEARVGGGRPV
EGGKGIGRGGRAGFGAGGGGEEEGREGGGAGIRTVVEVQDATKDLKNLLK
LG*
back to top

mRNA from alignment at scaffold_3:84..1665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1 ID=mRNA_1|Name=jgi.p|Nanoce1779_2|668127|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at scaffold_3:84..1665- (Nannochloropsis oceanica)
AGGATGGAATGTACCTTTTGGCGAAGGTGCTTGAGGCGGGTGTGGAGGAG
GCTACAAGCCAAGGCAGTTGCTTGGCATCCACGCACCCTCAGTATGTAAA
AACTTGCAATTATCGTACACTACATGCCCACGCTTGAGCCAGGCATAGTT
GTAGGGCTGGAAGGCTAGCCAATCGAGCGCCTTTCTGCACTCGCTTGATT
TTGCTCCCCGGAGTACGCGCCAAAAATAGAAAAGAGCACACACGTCGAGC
ACACATACCACACCACATCCGCAGTCTCCTTCCCGTCCCTATCTCCACCA
TCCACTAGGACAGATGTATTCATTTCTCCCTGTAATCTCGACAGCCGGCG
CTCATCGCCCACCATTCCCCTGCCCCCTCCCTCACGGCCATCATCTCAAC
AGACGCACACGACCCGAATCATCATGGGCAACAAAGGCAGTACGCCGGCC
GAAGGAGACGAGGCTGAGATCCCCACAGTGCCGGCTGCTACCCACCACGC
GCCTTCCACAGATGCCGTGCCACCGCCGCCGCTGCCAGCGGAAAAAAAAG
CGGGACTGGCCAAGTTGCTGACCCCAGCGGACCTCCTGAAGCGAGGAGGG
GGAGGGCGATCGCCCTGTGCAGCCTACTTCTCGGAGCAGCGGCGCCGAGG
AAGGTAGCACCAAAGCAAATAAGGGAGAGAAGAAGGGGAAGAAACAAATG
GAGGAAGGAAAGGAGAAGGAGGCTGCTCGAGAGACACTGCTGAGCATGCT
CGGGAGGGCGAGTGCTGCGGCAAGTGAGGCCCAACCCCCTCCACGTCCTA
CTCCATCTCAGCAAGCCCCACCTCCCCCTGCGTCGAAGCCTGTCGCTCCT
GCTGCATCGAAAGGCATCAAGGCCATCTCGATCAGTGAGCTGGAGGCGCG
CGTGGGAGGTGGGCGACCAGTAGAGGGGGGAAAGGGCATAGGGCGGGGGG
GAAGTAGGAGCAGGAGGAGGAAGGAACGAGGAACGAGGCAGGCGCTCATT
TCGATGTTGTCGCAAGCAAATAAACGGGGAGTAATAAAGCTACGGTTTCG
CGCAGCCATCTACTCCTCCGTCGGCGGGGGTGGTACGGAGGGATCATTCC
AAGGAAGCGGCCCTTGAAGGGGATGCTTTTTGGGGGCGGAGGAGGAGGGG
GAGGTGGGGGGGGGGGAAGTTGAGCAGGGCAATTGGTGGTGTTGTAAGAA
CAGGAGGGGGAGAAGGGGGGAAATGGTAACAACAGCAAGAGTTCACGTCG
ACGGAAGGGGGGGTAAGGACCACGGGAATAGACCAAGGAGGAGGAGGGGG
TGGAGGAGGAGGGAAGAATAGCGGAGTGGCACCACCGCCGCCGCAAGCAG
CGACCGCAGCAGCAGTAGCAGCCCCTCCGAGCACGTTCGCCTGGTCATCG
TTCCAGCGCTCTCCTGACCCCAAGACCATTCCCATGCCGCCCGCCGTCTT
TAAGGGGCCGGGTTTGGCGCTGGGGGAGGAGGGGAGGAGGAGGGGAGAGA
GGGTGGAGGGGCAGGAATTCGGACGGTAGTGGAAGTGCAGGACGCAACGA
AAGATCTGAAGAATTTGCTGAAGCTTGGATGA
back to top

Coding sequence (CDS) from alignment at scaffold_3:84..1665-

>mRNA_1 ID=mRNA_1|Name=jgi.p|Nanoce1779_2|668127|organism=Nannochloropsis oceanica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_3:84..1665- (Nannochloropsis oceanica)
GGGCCGGGTTTGGCGCTGGGGGAGGAGGGGAGGAGGAGGGGAGAGAGGGT
GGAGGGGCAGGAATTCGGACGGTAGTGGAAGTGCAGGACGCAACGAAAGA
TCTGAAGAATTTGCTGAAGCTTGGATGACCCCACCTCCCCCTGCGTCGAA
GCCTGTCGCTCCTGCTGCATCGAAAGGCATCAAGGCCATCTCGATCAGTG
AGCTGGAGGCGCGCGTGGGAGGTGGGCGACCAGTAGAGGGGGGAAAGGGC
ATAGGGCGGGGGGGAAATGGGCAACAAAGGCAGTACGCCGGCCGAAGGAG
ACGAGGCTGAGATCCCCACAGTGCCGGCTGCTACCCACCACGCGCCTTCC
ACAGATGCCGTGCCACCGCCGCCGCTGCCAGCGGAAAAAAAAGCGGGACT
GGCCAAGTTGCTGACCCCAGCGGACCTCCTGAAGCGAGGAGGGGGAGGGC
GATCGCCCTGGGCCGGGTTTGGCGCTGGGGGAGGAGGGGAGGAGGAGGGG
AGAGAGGGTGGAGGGGCAGGAATTCGGACGGTAGTGGAAGTGCAGGACGC
AACGAAAGATCTGAAGAATTTGCTGAAGCTTGGATGACCCCACCTCCCCC
TGCGTCGAAGCCTGTCGCTCCTGCTGCATCGAAAGGCATCAAGGCCATCT
CGATCAGTGAGCTGGAGGCGCGCGTGGGAGGTGGGCGACCAGTAGAGGGG
GGAAAGGGCATAGGGCGGGGGGGAAATGGGCAACAAAGGCAGTACGCCGG
CCGAAGGAGACGAGGCTGAGATCCCCACAGTGCCGGCTGCTACCCACCAC
GCGCCTTCCACAGATGCCGTGCCACCGCCGCCGCTGCCAGCGGAAAAAAA
AGCGGGACTGGCCAAGTTGCTGACCCCAGCGGACCTCCTGAAGCGAGGAG
GGGGAGGGCGATCGCCCTGGGCCGGGTTTGGCGCTGGGGGAGGAGGGGAG
GAGGAGGGGAGAGAGGGTGGAGGGGCAGGAATTCGGACGGTAGTGGAAGT
GCAGGACGCAACGAAAGATCTGAAGAATTTGCTGAAGCTTGGATGACCCC
ACCTCCCCCTGCGTCGAAGCCTGTCGCTCCTGCTGCATCGAAAGGCATCA
AGGCCATCTCGATCAGTGAGCTGGAGGCGCGCGTGGGAGGTGGGCGACCA
GTAGAGGGGGGAAAGGGCATAGGGCGGGGGGGAAATGGGCAACAAAGGCA
GTACGCCGGCCGAAGGAGACGAGGCTGAGATCCCCACAGTGCCGGCTGCT
ACCCACCACGCGCCTTCCACAGATGCCGTGCCACCGCCGCCGCTGCCAGC
GGAAAAAAAAGCGGGACTGGCCAAGTTGCTGACCCCAGCGGACCTCCTGA
AGCGAGGAGGGGGAGGGCGATCGCCCT
back to top
Synonyms
Publications