NO30G01320.1, NO30G01320.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G01320.1
Unique Name	NO30G01320.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4419
Alignment location	chr30:485956..490949 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:485956..490949 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO30G01320.1 vs.
Match: EWM20734.1 (protein of unknown function DUF21 [Nannochloropsis gaditana])

HSP 1 Score: 370.9 bits (951), Expect = 1.600e-98
Identity = 257/538 (47.77%), Postives = 323/538 (60.04%), Query Frame = 0

Query:  278 KDSHGFATFQDPSSWVALTLALLCVLGAAMASGLTIGLMSMERLELEIKEKVGTEEEQRQAKRLLPLLHRKHLLLVTLLLFNSASAEALPLFLDELVPSYIAIIVSVTAVLFFGEILPAAVFSGPNQLRLGSHMTPLVWLLIFLFSPLAWPVAWCLDRFLGDAHGQGKRYTRQELTALMEIHQRKGGGKEGGDARGGGQEGGARGQRPQQWQFRVVPCTPSSFPASLPASHKAISFDSSLLSTSPLSIPRSFPSSAGLLASSLSHHSQQEEGGNEIEDEEGRRRKGGHSTLAAATASTSTTSTTTSTTTSTTTAPAPTTSRRKKTKQMKQGPKPFPYRLPPSLPSSSTSPPSSLASSSSSSLLTKREVDIMVGVLQISSKTVADCMVPWSRVTCLSSSAPLNEKTLAQIRAAGFSRIPVCRSPSSLLPSSRLVPSSPVLVGEGGERGGEGGRVRGQSDNLTPKGSGGREGRPDGGREGRWVGQHEAASVMGYVLTKNLIEVDPRAGLTIDLMRTAKTRTRKGGREGGRVLRCPIVRGP 816
            +DS+GFATFQ PSSW+ L LA  CV+ AA+ASGLTIGLMS+E LELEIKE++GT EE+ QA RLLPLL+R+HLLLVTLLLFN+A+AEALPLFLD LVP YIA+I+SVTAVLFFGEI P+A+F GPNQL+LGS MTP+VW LI  F P+A P+AWCLDRFLGD HG GKRY+R+EL+ALMEIH ++             + GG  G +  + Q      TP + P              SL+ +S L++  +   +  LL    S H+      + +           H+ LA A+   S                   T + KK  Q +    P P  +PP+  + + +PP+       S+LL+KREVDI+VGVLQIS+K VADCMVPW+ V CL+  APLNE+TL  IRAAGFSR+PVC                     EGG  G  GG + G  ++    G   REGR   G    WVG+ EAASV GYVLTK+LIEVDP AGLT+  M+              R++RCPIV  P
Sbjct:  205 QDSNGFATFQTPSSWIHLGLAFACVMAAAIASGLTIGLMSIEPLELEIKERIGTVEERSQAHRLLPLLNRRHLLLVTLLLFNAAAAEALPLFLDALVPGYIAVILSVTAVLFFGEIFPSAIFMGPNQLKLGSRMTPVVWCLICFFFPIACPIAWCLDRFLGDEHGHGKRYSREELSALMEIHLKQ-------------RRGGKNGDKADEAQ-----ATPGATP--------------SLVPSSSLALAPAGKRTPALL----SLHTASSFPPSAL---------ASHALLANASP-LSPPEVRLEEDAQEGVKKGRRTKKGKKHNQGQSSHSPGP--VPPA--AGAFAPPAP-----HSTLLSKREVDIVVGVLQISNKVVADCMVPWTSVCCLAVDAPLNEETLKAIRAAGFSRLPVCFRQGGGKEGR-----------EGGRGGSSGGEMNGTREDARASGREWREGRRGEG----WVGKREAASVCGYVLTKSLIEVDPHAGLTVGAMKK-------------RLVRCPIVVAP 659

The following BLAST results are available for this feature:

BLAST of NO30G01320.1 vs.

BLAST of NO30G01320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20734.1	1.600e-98	47.77	protein of unknown function DUF21 [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G01320	NO30G01320	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G01320.1	NO30G01320.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G01320.1.cds1	NO30G01320.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01320.1.cds2	NO30G01320.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01320.1.cds3	NO30G01320.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01320.1.cds4	NO30G01320.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01320.1.cds5	NO30G01320.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01320.1.cds6	NO30G01320.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:485956..490949+
coding sequence from alignment at chr30:485956..490949+

mRNA sequence

>NO30G01320.1 ID=NO30G01320.1|Name=NO30G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=4419bp
GTGACACTCTCCCGCTGCCGGACGTGGGAACACACACCACTTTCGCCATC
ACTTAACACGTCGCGAGAAGGTTTATATACGTACGCGCCACATCCCTCAT
GTTATGAGTATAGTTGGAACTTTGGTACTAGCAGCAACTCAACATCTCTG
TGGGTCTTTGTGCACTGAATCTGCGCCACAGCATTGATTGGACGGGCGGC
TTGAGTCGTTGCTGAATCTCTTCAGCCACCCTTTCCTCCACATCGGGGGG
GGGCAACCGCGATATTTTGGTGATCAAAGTCTTTATCAGGAGTGCTACCA
TGTTCTGATGGTGTCCACCACAAGTTTATTTCACTCGTCTACTGGGAAAA
TTCTCTCATAACGCACTCAAAAAACTACCCACACTTGACTAAGAAGAGGA
ACTCTCTCCTTACATTGCGAGCACCCAAACACCAGTATCAGGAGCAGAAG
GAGTAGCCTCGGCGTCGACCCACACGAATCGATCTCCCTGTCCCACCCGC
GCCTTTCCTTGCATTTTATAAACTCCGAGACACAGGGACTCATCAGCACC
CTGCGCCACACGGCATGGTAGCAGAATGGGGAGGCAACAGCAGCAGCAGC
AGCAGCGGCAGCAGCAGCAGCGATAGCCGCGGCGACAGGAGCCCCAGCAG
CAGCAGTGTGAGCAGTACGAGCATCACTAGCATTGGGAACAAGAGATTCA
CGACCAGCAGCAGTAGTGCTATCGAGCGCGGATGCACATTTGCCGTCCTT
GCGGTCCTGCTGGTCACCTTGGTACCGCCAGCAGGGGCACACACAAGTAG
TAGCAGCAGCAGCAGCAGTGGCAGCAGCAATGACCTAGGTGGCAAGATTC
TTGATGCATCTTCGCTGCCCTCCAATCACCTTCGTCGCCGGTCTGTTGAG
CAGCATCAGCGGCAGCATCAGCAGCTGCATCAGCAGCAAGGGTGGGCGCA
AGAGGAGACGGACTGGAAACAGGCATGGAAAGACGATGCGGAAAAAGAGG
GGTGGATGCAGCATTGCATGCAGGTTCTCGGCTCCCAACAAAATGCCACC
AGGTTCTGTCACATCCTGGCATGCCCCCATCACTGCCATCACCATCGTCG
TGTTCTTCGTGCGGGAAAGGAAGACATCACCGCATCCCCTCTTCCTTCCC
TCCCTTCCTCCCTCCCGGCTCCACTTGCCGTCATCCACGACAGAGAAGCT
GTCCACACACGGTCAGCTGACGACCTTCTGCTTAACAAGGACGAGGAAGA
AAAGGAGGAAGAGAGGATCCAAGAGGAGGGACGACGTAAAAGCCAACGGA
AGCCAGAACCGACGAAGGGAAGGAGGGAGGGAGGGGCAGAGACAGACAAA
GCAGCCGTCAAGAAGCGTCCAGCAGAGGATCCTCTTCCCCCCACCAAGGA
CTCACACGGCTTTGCCACCTTTCAAGACCCCTCGAGCTGGGTCGCCCTGA
CCCTAGCCCTGCTCTGTGTCCTGGGTGCCGCCATGGCTTCGGGCCTGACT
ATTGGTCTCATGTCAATGGAACGATTGGAGCTGGAGATAAAGGAGAAAGT
GGGGACCGAGGAGGAACAACGGCAGGCGAAACGGTTGTTACCGTTACTCC
ACAGGAAGCACCTGCTGCTCGTGACGCTACTTCTCTTCAATTCGGCGTCT
GCAGAGGCCCTCCCTCTCTTTCTCGACGAGCTCGTCCCTTCCTACATCGC
CATCATTGTCTCGGTCACTGCCGTCTTGTTTTTCGGGGAAATCCTCCCGG
CGGCTGTTTTCTCGGGGCCAAATCAACTGAGGCTTGGATCTCACATGACC
CCCCTGGTCTGGCTCCTCATCTTCCTCTTCTCTCCCCTTGCGTGGCCTGT
GGCCTGGTGCCTGGACCGCTTCTTGGGCGATGCGCACGGGCAAGGCAAGC
GCTACACTCGACAAGAGCTGACAGCCCTTATGGAGATCCACCAGAGGAAG
GGGGGAGGGAAGGAAGGAGGTGATGCACGAGGAGGAGGGCAGGAGGGGGG
GGCAAGAGGCCAGCGACCCCAGCAATGGCAGTTTCGCGTAGTGCCTTGCA
CCCCTTCCTCCTTCCCGGCCTCCCTCCCGGCCTCGCACAAAGCTATTTCT
TTTGACTCCTCCTTGCTCTCTACCTCCCCTCTATCCATCCCTCGCTCCTT
TCCTTCTTCAGCGGGCCTTCTCGCCTCCTCCCTCTCCCACCACTCACAAC
AAGAGGAGGGAGGGAATGAGATCGAGGACGAGGAAGGGCGAAGGAGGAAG
GGAGGACATAGCACGCTGGCCGCTGCCACTGCCTCTACCTCTACTACTTC
AACTACTACTTCAACTACTACTTCAACTACTACTGCTCCCGCTCCAACCA
CCTCAAGGCGAAAAAAGACAAAGCAGATGAAGCAAGGACCGAAACCATTC
CCCTACCGCCTCCCTCCCTCCCTTCCCTCCTCCTCCACCTCTCCCCCCTC
CTCCCTTGCCTCCTCCTCCTCCTCTTCCCTTCTGACCAAGCGCGAGGTGG
ACATAATGGTAGGTGTCCTGCAGATCTCGTCGAAAACCGTCGCCGACTGC
ATGGTCCCGTGGTCCCGGGTGACCTGCCTCTCCTCGTCCGCCCCTCTCAA
TGAGAAGACTCTCGCTCAAATACGAGCAGCAGGCTTCAGCCGCATCCCTG
TCTGTCGGTCCCCCTCGTCTCTCCTCCCTTCTTCGCGTCTGGTCCCCTCC
TCCCCGGTTCTTGTCGGAGAAGGAGGGGAAAGAGGGGGGGAGGGAGGGAG
GGTGCGTGGGCAGAGTGACAACCTGACCCCGAAAGGCAGTGGTGGAAGGG
AGGGACGGCCGGACGGAGGGAGGGAAGGGAGGTGGGTGGGGCAACATGAA
GCTGCCTCGGTCATGGGATACGTGTTGACGAAGAATCTAATTGAAGTGGA
CCCCCGGGCCGGGCTGACCATCGACCTCATGAGGACGGCGAAGACGAGGA
CGAGGAAAGGCGGCAGGGAGGGGGGGAGGGTGTTGCGCTGTCCGATCGTG
CGAGGCCCCGGAGGAAACCCTGGCATGCCTCCTGGGGGAGCACGGGGCGG
AGGGAGGGCTGGAGGGAGGCAGGGGGGGGCGGTTCCGGTGGGAATCGTTA
CTTTGGAGGACGTGATGGAGATGATGCTTCAGGCGGAGATTTGGGATGAG
ACCGACGTGCGAGAAGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGC
GGAGGAGGAGGAGGGAAAGAAGGAAGAAAAGGAGAAAAGGGAGGCGAAAG
AGGAGATGGAGGAAGAGGGAGAGACGCAAAAAGAGGGGTTGGAGCAGCTG
CTGCGACTGCTGAAGGAGGGAGGGAAGGGGGAGGTGGTGATAGAAGAGGG
AGGGAGGGAGGAAGATGTTGGTAAGGGGAGAAGGAGGTTGAGGAAAGCCT
TGCCCCTGTCCTCGGTTGTGGGAGGAAAGGGAGAGAGGGGAGGAGAAAGG
GAGGGAGGGAGGGCGCCTATGGTTGCAGCAGGTAGTCCCACTCCTATTGC
TAGCACGGCTGCCAGCAGTCACAGCATTGCCAGTAGTGGAGGCCTCAGCA
GTAGCAACCGCAGCAGTAGCAATAGCAGCGGCGGCGACAGCAGCAGCATC
GACGATAACAGCAGTGCCATTGTGTCTGCTGCGCTCAGGCGACGCTTCCC
TTGCTTCTTCTCCTCCCCCTTCGCCTCCTCCATCTCCTCGATACGCGCGC
TGGCAGCAGCCAATGCTAGCGCTGCTGCTGTTTCTACTGCCACTGCCACC
TCTTGTGATACTACCACTGCTCCTTCTACTATTGCAGCTGCTCCTGCTGC
TCCTGCTGCTACAGCTGCTACTACTGCTGCTGTAACTAGTTCCCCCTCCT
CCTGCTTCTCTGGACCCAGCGAGGCCTCTTCATCCTGCACCTCCGGCGAT
GTTAGAAGGCATATTACATCACTAGCCCCCTCGCCCTCATCCCCCCTGTC
CCTCTTGTCCCCTCTTCCTTCTCCCTCTCGATCCTTCGACAAGAAAAAAA
ACGTCAGTCATTGGGCGCGACTGCGGCAGGCAGTAAACCAGACCCGCCTC
ACTCGACTAAAGAACTCGGTCCTGGATGACTCTACGCACGGCAGGGGTAC
CCGGAAGGGGGGGAAAGAATATGGACGTTTGGAAGAATGGGCAGGAGGTG
TGTCGGAATGCGAGGCATTTACTTTCATGGAGGGGGAGGAAGGGGAAGAG
GAAGGGAAAGACGGAGGGAAGGAGGCGTTAGGAAAAAGGGTGATTGAGAT
GGAGATGTTGACAGTTCTGGAACGGAGTTTGCATGGTGGGATGAATGGAG
GAAGGGACGGAGGGAGGGATGGAGGGCTTGGTCAAGTATCGATTGCGATT
CCACCGGGGATGACAGACGCGGGCATGAGGGGAGGAAAGGAGGGAGGGAA
GGAGGAAAGGACGATGTAA

protein sequence of NO30G01320.1

>NO30G01320.1-protein ID=NO30G01320.1-protein|Name=NO30G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1285bp
MVAEWGGNSSSSSSGSSSSDSRGDRSPSSSSVSSTSITSIGNKRFTTSSS
SAIERGCTFAVLAVLLVTLVPPAGAHTSSSSSSSSGSSNDLGGKILDASS
LPSNHLRRRSVEQHQRQHQQLHQQQGWAQEETDWKQAWKDDAEKEGWMQH
CMQVLGSQQNATRFCHILACPHHCHHHRRVLRAGKEDITASPLPSLPSSL
PAPLAVIHDREAVHTRSADDLLLNKDEEEKEEERIQEEGRRKSQRKPEPT
KGRREGGAETDKAAVKKRPAEDPLPPTKDSHGFATFQDPSSWVALTLALL
CVLGAAMASGLTIGLMSMERLELEIKEKVGTEEEQRQAKRLLPLLHRKHL
LLVTLLLFNSASAEALPLFLDELVPSYIAIIVSVTAVLFFGEILPAAVFS
GPNQLRLGSHMTPLVWLLIFLFSPLAWPVAWCLDRFLGDAHGQGKRYTRQ
ELTALMEIHQRKGGGKEGGDARGGGQEGGARGQRPQQWQFRVVPCTPSSF
PASLPASHKAISFDSSLLSTSPLSIPRSFPSSAGLLASSLSHHSQQEEGG
NEIEDEEGRRRKGGHSTLAAATASTSTTSTTTSTTTSTTTAPAPTTSRRK
KTKQMKQGPKPFPYRLPPSLPSSSTSPPSSLASSSSSSLLTKREVDIMVG
VLQISSKTVADCMVPWSRVTCLSSSAPLNEKTLAQIRAAGFSRIPVCRSP
SSLLPSSRLVPSSPVLVGEGGERGGEGGRVRGQSDNLTPKGSGGREGRPD
GGREGRWVGQHEAASVMGYVLTKNLIEVDPRAGLTIDLMRTAKTRTRKGG
REGGRVLRCPIVRGPGGNPGMPPGGARGGGRAGGRQGGAVPVGIVTLEDV
MEMMLQAEIWDETDVREEGEEEEEEEEEAEEEEGKKEEKEKREAKEEMEE
EGETQKEGLEQLLRLLKEGGKGEVVIEEGGREEDVGKGRRRLRKALPLSS
VVGGKGERGGEREGGRAPMVAAGSPTPIASTAASSHSIASSGGLSSSNRS
SSNSSGGDSSSIDDNSSAIVSAALRRRFPCFFSSPFASSISSIRALAAAN
ASAAAVSTATATSCDTTTAPSTIAAAPAAPAATAATTAAVTSSPSSCFSG
PSEASSSCTSGDVRRHITSLAPSPSSPLSLLSPLPSPSRSFDKKKNVSHW
ARLRQAVNQTRLTRLKNSVLDDSTHGRGTRKGGKEYGRLEEWAGGVSECE
AFTFMEGEEGEEEGKDGGKEALGKRVIEMEMLTVLERSLHGGMNGGRDGG
RDGGLGQVSIAIPPGMTDAGMRGGKEGGKEERTM*

mRNA from alignment at chr30:485956..490949+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G01320.1 ID=NO30G01320.1|Name=NO30G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=4994bp|location=Sequence derived from alignment at chr30:485956..490949+ (Nannochloropsis oceanica)
GTGACACTCTCCCGCTGCCGGACGTGGGAACACACACCACTTTCGCCATC
ACTTAACACGTCGCGAGAAGGTTTATATACGTACGCGCCACATCCCTCAT
GTTATGAGTATAGTTGGAACTTTGGTACTAGCAGCAACTCAACATCTCTG
TGGGTCTTTGTGCACTGAATCTGCGCCACAGCATTGATTGGACGGGCGGC
TTGAGTCGTTGCTGAATCTCTTCAGCCACCCTTTCCTCCACATCGGGGGG
GGGCAACCGCGATATTTTGGTGATCAAAGTCTTTATCAGGAGTGCTACCA
TGTTCTGATGGTGTCCACCACAAGTTTATTTCACTCGTCTACTGGGAAAA
TTCTCTCATAACGCACTCAAAAAACTACCCACACTTGACTAAGAAGAGGA
ACTCTCTCCTTACATTGCGAGCACCCAAACACCAGTATCAGGAGCAGAAG
GAGTAGCCTCGGCGTCGACCCACACGAATCGATCTCCCTGTCCCACCCGC
GCCTTTCCTTGCATTTTATAAACTCCGAGACACAGGGACTCATCAGCACC
CTGCGCCACACGGCATGGTAGCAGAATGGGGAGGCAACAGCAGCAGCAGC
AGCAGCGGCAGCAGCAGCAGCGATAGCCGCGGCGACAGGAGCCCCAGCAG
CAGCAGTGTGAGCAGTACGAGCATCACTAGCATTGGGAACAAGAGATTCA
CGACCAGCAGCAGTAGTGCTATCGAGCGCGGATGCACATTTGCCGTCCTT
GCGGTCCTGCTGGTCACCTTGGTACCGCCAGCAGGGGCACACACAAGTAG
TAGCAGCAGCAGCAGCAGTGGCAGCAGCAATGACCTAGGTGGCAAGATTC
TTGATGCATCTTCGCTGCCCTCCAATCACCTTCGTCGCCGGTCTGTTGAG
CAGCATCAGCGGCAGCATCAGCAGCTGCATCAGCAGCAAGGGTGGGCGCA
AGAGGAGACGGACTGGAAACAGGCATGGAAAGACGATGCGGAAAAAGAGG
GGTGGATGCAGCATTGCATGCAGGTGCGTTTGCATTATTGGGAGACCACA
TTTGGTCGGTACTACGAGGCCAAGCTTCTTCACTTCCAATCGCTCGCTCA
TCCTTTTCCTCCCTCCCTCCCTCCTCTCTTCCCACAGGTTCTCGGCTCCC
AACAAAATGCCACCAGGTTCTGTCACATCCTGGCATGCCCCCATCACTGC
CATCACCATCGTCGTGTTCTTCGTGCGGGAAAGGAAGACATCACCGCATC
CCCTCTTCCTTCCCTCCCTTCCTCCCTCCCGGCTCCACTTGCCGTCATCC
ACGACAGAGAAGCTGTCCACACACGGTCAGCTGACGACCTTCTGCTTAAC
AAGGACGAGGAAGAAAAGGAGGAAGAGAGGATCCAAGAGGAGGGACGACG
TAAAAGCCAACGGAAGCCAGAACCGACGAAGGGAAGGAGGGAGGGAGGGG
CAGAGACAGACAAAGCAGCCGTCAAGAAGCGTCCAGCAGAGGATCCTCTT
CCCCCCACCAAGGACTCACACGGCTTTGCCACCTTTCAAGACCCCTCGAG
CTGGGTCGCCCTGACCCTAGCCCTGCTCTGTGTCCTGGGTGCCGCCATGG
CTTCGGGTAAGTGAGTGACCTCCCTCCCTCGCCCTCTCTCTCTCCCTCCC
TCCCTCCCTCCCCCTCTTCCCTCCCTTCCCCTCACGCCCATCCTGCCTCC
TCCCTCAGGCCTGACTATTGGTCTCATGTCAATGGAACGATTGGAGCTGG
AGATAAAGGAGAAAGTGGGGACCGAGGAGGAACAACGGCAGGCGAAACGG
TTGTTACCGTTACTCCACAGGAAGCACCTGCTGCTCGTGACGCTACTTCT
CTTCAATTCGGCGTCTGCAGAGGCCCTCCCTCTCTTTCTCGACGAGCTCG
TCCCTTCCTACATCGCCATCATTGTCTCGGTCACTGCCGTCTTGTTTTTC
GGGGTAAGTCGTGCTCGTCCTCCCTCCCCCTCCCTCTCTCCCTCCCATTC
CTAGCTAGTGACATACAATTGCTCTTCCATTGGAGGCTTGACTGATCCAT
CCTCCTTCCCTTCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCC
TCCCTCCTTCCCTCCCTCCCTCTTCCTAGGAAATCCTCCCGGCGGCTGTT
TTCTCGGGGCCAAATCAACTGAGGCTTGGATCTCACATGACCCCCCTGGT
CTGGCTCCTCATCTTCCTCTTCTCTCCCCTTGCGTGGCCTGTGGCCTGGT
GCCTGGACCGCTTCTTGGGTGCGTCCCTCCTCCCTCCCTTCCTTCCCTCC
CTCCCTCTCTTTCACCCTCACTCTCCCGTCCTCCCGTCCTCCCTCCCTCC
CTCCCTCCTGCTTCATCCCTCCCCCAGGCGATGCGCACGGGCAAGGCAAG
CGCTACACTCGACAAGAGCTGACAGCCCTTATGGAGATCCACCAGAGGAA
GGGGGGAGGGAAGGAAGGAGGTGATGCACGAGGAGGAGGGCAGGAGGGGG
GGGCAAGAGGCCAGCGACCCCAGCAATGGCAGTTTCGCGTAGTGCCTTGC
ACCCCTTCCTCCTTCCCGGCCTCCCTCCCGGCCTCGCACAAAGCTATTTC
TTTTGACTCCTCCTTGCTCTCTACCTCCCCTCTATCCATCCCTCGCTCCT
TTCCTTCTTCAGCGGGCCTTCTCGCCTCCTCCCTCTCCCACCACTCACAA
CAAGAGGAGGGAGGGAATGAGATCGAGGACGAGGAAGGGCGAAGGAGGAA
GGGAGGACATAGCACGCTGGCCGCTGCCACTGCCTCTACCTCTACTACTT
CAACTACTACTTCAACTACTACTTCAACTACTACTGCTCCCGCTCCAACC
ACCTCAAGGCGAAAAAAGACAAAGCAGATGAAGCAAGGACCGAAACCATT
CCCCTACCGCCTCCCTCCCTCCCTTCCCTCCTCCTCCACCTCTCCCCCCT
CCTCCCTTGCCTCCTCCTCCTCCTCTTCCCTTCTGACCAAGCGCGAGGTG
GACATAATGGTAGGTGTCCTGCAGATCTCGTCGAAAACCGTCGCCGACTG
CATGGTCCCGTGGTCCCGGGTGACCTGCCTCTCCTCGTCCGCCCCTCTCA
ATGAGAAGACTCTCGCTCAAATACGAGCAGCAGGCTTCAGCCGCATCCCT
GTCTGTCGGTCCCCCTCGTCTCTCCTCCCTTCTTCGCGTCTGGTCCCCTC
CTCCCCGGTTCTTGTCGGAGAAGGAGGGGAAAGAGGGGGGGAGGGAGGGA
GGGTGCGTGGGCAGAGTGACAACCTGACCCCGAAAGGCAGTGGTGGAAGG
GAGGGACGGCCGGACGGAGGGAGGGAAGGGAGGTGGGTGGGGCAACATGA
AGCTGCCTCGGTCATGGGATACGTGTTGACGAAGAATCTAATTGAAGTGG
ACCCCCGGGCCGGGCTGACCATCGACCTCATGAGGACGGCGAAGACGAGG
ACGAGGAAAGGCGGCAGGGAGGGGGGGAGGGTGTTGCGCTGTCCGATCGT
GGTGAGCCCTTCCTGTCCATTGATTCACATCTTGTCCACCTTTCAACTCG
GGCGGGCCCATATCGCCCTCGTGAGCGAGGCCCCGGAGGAAACCCTGGCA
TGCCTCCTGGGGGAGCACGGGGCGGAGGGAGGGCTGGAGGGAGGCAGGGG
GGGGCGGTTCCGGTGGGAATCGTTACTTTGGAGGACGTGATGGAGATGAT
GCTTCAGGCGGAGATTTGGGATGAGACCGACGTGCGAGAAGAGGGGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAGGGAAAGAAGGAA
GAAAAGGAGAAAAGGGAGGCGAAAGAGGAGATGGAGGAAGAGGGAGAGAC
GCAAAAAGAGGGGTTGGAGCAGCTGCTGCGACTGCTGAAGGAGGGAGGGA
AGGGGGAGGTGGTGATAGAAGAGGGAGGGAGGGAGGAAGATGTTGGTAAG
GGGAGAAGGAGGTTGAGGAAAGCCTTGCCCCTGTCCTCGGTTGTGGGAGG
AAAGGGAGAGAGGGGAGGAGAAAGGGAGGGAGGGAGGGCGCCTATGGTTG
CAGCAGGTAGTCCCACTCCTATTGCTAGCACGGCTGCCAGCAGTCACAGC
ATTGCCAGTAGTGGAGGCCTCAGCAGTAGCAACCGCAGCAGTAGCAATAG
CAGCGGCGGCGACAGCAGCAGCATCGACGATAACAGCAGTGCCATTGTGT
CTGCTGCGCTCAGGCGACGCTTCCCTTGCTTCTTCTCCTCCCCCTTCGCC
TCCTCCATCTCCTCGATACGCGCGCTGGCAGCAGCCAATGCTAGCGCTGC
TGCTGTTTCTACTGCCACTGCCACCTCTTGTGATACTACCACTGCTCCTT
CTACTATTGCAGCTGCTCCTGCTGCTCCTGCTGCTACAGCTGCTACTACT
GCTGCTGTAACTAGTTCCCCCTCCTCCTGCTTCTCTGGACCCAGCGAGGC
CTCTTCATCCTGCACCTCCGGCGATGTTAGAAGGCATATTACATCACTAG
CCCCCTCGCCCTCATCCCCCCTGTCCCTCTTGTCCCCTCTTCCTTCTCCC
TCTCGATCCTTCGACAAGAAAAAAAACGTCAGTCATTGGGCGCGACTGCG
GCAGGCAGTAAACCAGACCCGCCTCACTCGACTAAAGAACTCGGTCCTGG
ATGACTCTACGCACGGCAGGGGTACCCGGAAGGGGGGGAAAGAATATGGA
CGTTTGGAAGAATGGGCAGGAGGTGTGTCGGAATGCGAGGCATTTACTTT
CATGGAGGGGGAGGAAGGGGAAGAGGAAGGGAAAGACGGAGGGAAGGAGG
CGTTAGGAAAAAGGGTGATTGAGATGGAGATGTTGACAGTTCTGGAACGG
AGTTTGCATGGTGGGATGAATGGAGGAAGGGACGGAGGGAGGGATGGAGG
GCTTGGTCAAGTATCGATTGCGATTCCACCGGGGATGACAGACGCGGGCA
TGAGGGGAGGAAAGGAGGGAGGGAAGGAGGAAAGGACGATGTAA

Coding sequence (CDS) from alignment at chr30:485956..490949+

>NO30G01320.1 ID=NO30G01320.1|Name=NO30G01320.1|organism=Nannochloropsis oceanica|type=CDS|length=3855bp|location=Sequence derived from alignment at chr30:485956..490949+ (Nannochloropsis oceanica)
ATGGTAGCAGAATGGGGAGGCAACAGCAGCAGCAGCAGCAGCGGCAGCAG
CAGCAGCGATAGCCGCGGCGACAGGAGCCCCAGCAGCAGCAGTGTGAGCA
GTACGAGCATCACTAGCATTGGGAACAAGAGATTCACGACCAGCAGCAGT
AGTGCTATCGAGCGCGGATGCACATTTGCCGTCCTTGCGGTCCTGCTGGT
CACCTTGGTACCGCCAGCAGGGGCACACACAAGTAGTAGCAGCAGCAGCA
GCAGTGGCAGCAGCAATGACCTAGGTGGCAAGATTCTTGATGCATCTTCG
CTGCCCTCCAATCACCTTCGTCGCCGGTCTGTTGAGCAGCATCAGCGGCA
GCATCAGCAGCTGCATCAGCAGCAAGGGTGGGCGCAAGAGGAGACGGACT
GGAAACAGGCATGGAAAGACGATGCGGAAAAAGAGGGGTGGATGCAGCAT
TGCATGCAGGTTCTCGGCTCCCAACAAAATGCCACCAGGTTCTGTCACAT
CCTGGCATGCCCCCATCACTGCCATCACCATCGTCGTGTTCTTCGTGCGG
GAAAGGAAGACATCACCGCATCCCCTCTTCCTTCCCTCCCTTCCTCCCTC
CCGGCTCCACTTGCCGTCATCCACGACAGAGAAGCTGTCCACACACGGTC
AGCTGACGACCTTCTGCTTAACAAGGACGAGGAAGAAAAGGAGGAAGAGA
GGATCCAAGAGGAGGGACGACGTAAAAGCCAACGGAAGCCAGAACCGACG
AAGGGAAGGAGGGAGGGAGGGGCAGAGACAGACAAAGCAGCCGTCAAGAA
GCGTCCAGCAGAGGATCCTCTTCCCCCCACCAAGGACTCACACGGCTTTG
CCACCTTTCAAGACCCCTCGAGCTGGGTCGCCCTGACCCTAGCCCTGCTC
TGTGTCCTGGGTGCCGCCATGGCTTCGGGCCTGACTATTGGTCTCATGTC
AATGGAACGATTGGAGCTGGAGATAAAGGAGAAAGTGGGGACCGAGGAGG
AACAACGGCAGGCGAAACGGTTGTTACCGTTACTCCACAGGAAGCACCTG
CTGCTCGTGACGCTACTTCTCTTCAATTCGGCGTCTGCAGAGGCCCTCCC
TCTCTTTCTCGACGAGCTCGTCCCTTCCTACATCGCCATCATTGTCTCGG
TCACTGCCGTCTTGTTTTTCGGGGAAATCCTCCCGGCGGCTGTTTTCTCG
GGGCCAAATCAACTGAGGCTTGGATCTCACATGACCCCCCTGGTCTGGCT
CCTCATCTTCCTCTTCTCTCCCCTTGCGTGGCCTGTGGCCTGGTGCCTGG
ACCGCTTCTTGGGCGATGCGCACGGGCAAGGCAAGCGCTACACTCGACAA
GAGCTGACAGCCCTTATGGAGATCCACCAGAGGAAGGGGGGAGGGAAGGA
AGGAGGTGATGCACGAGGAGGAGGGCAGGAGGGGGGGGCAAGAGGCCAGC
GACCCCAGCAATGGCAGTTTCGCGTAGTGCCTTGCACCCCTTCCTCCTTC
CCGGCCTCCCTCCCGGCCTCGCACAAAGCTATTTCTTTTGACTCCTCCTT
GCTCTCTACCTCCCCTCTATCCATCCCTCGCTCCTTTCCTTCTTCAGCGG
GCCTTCTCGCCTCCTCCCTCTCCCACCACTCACAACAAGAGGAGGGAGGG
AATGAGATCGAGGACGAGGAAGGGCGAAGGAGGAAGGGAGGACATAGCAC
GCTGGCCGCTGCCACTGCCTCTACCTCTACTACTTCAACTACTACTTCAA
CTACTACTTCAACTACTACTGCTCCCGCTCCAACCACCTCAAGGCGAAAA
AAGACAAAGCAGATGAAGCAAGGACCGAAACCATTCCCCTACCGCCTCCC
TCCCTCCCTTCCCTCCTCCTCCACCTCTCCCCCCTCCTCCCTTGCCTCCT
CCTCCTCCTCTTCCCTTCTGACCAAGCGCGAGGTGGACATAATGGTAGGT
GTCCTGCAGATCTCGTCGAAAACCGTCGCCGACTGCATGGTCCCGTGGTC
CCGGGTGACCTGCCTCTCCTCGTCCGCCCCTCTCAATGAGAAGACTCTCG
CTCAAATACGAGCAGCAGGCTTCAGCCGCATCCCTGTCTGTCGGTCCCCC
TCGTCTCTCCTCCCTTCTTCGCGTCTGGTCCCCTCCTCCCCGGTTCTTGT
CGGAGAAGGAGGGGAAAGAGGGGGGGAGGGAGGGAGGGTGCGTGGGCAGA
GTGACAACCTGACCCCGAAAGGCAGTGGTGGAAGGGAGGGACGGCCGGAC
GGAGGGAGGGAAGGGAGGTGGGTGGGGCAACATGAAGCTGCCTCGGTCAT
GGGATACGTGTTGACGAAGAATCTAATTGAAGTGGACCCCCGGGCCGGGC
TGACCATCGACCTCATGAGGACGGCGAAGACGAGGACGAGGAAAGGCGGC
AGGGAGGGGGGGAGGGTGTTGCGCTGTCCGATCGTGCGAGGCCCCGGAGG
AAACCCTGGCATGCCTCCTGGGGGAGCACGGGGCGGAGGGAGGGCTGGAG
GGAGGCAGGGGGGGGCGGTTCCGGTGGGAATCGTTACTTTGGAGGACGTG
ATGGAGATGATGCTTCAGGCGGAGATTTGGGATGAGACCGACGTGCGAGA
AGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAGG
GAAAGAAGGAAGAAAAGGAGAAAAGGGAGGCGAAAGAGGAGATGGAGGAA
GAGGGAGAGACGCAAAAAGAGGGGTTGGAGCAGCTGCTGCGACTGCTGAA
GGAGGGAGGGAAGGGGGAGGTGGTGATAGAAGAGGGAGGGAGGGAGGAAG
ATGTTGGTAAGGGGAGAAGGAGGTTGAGGAAAGCCTTGCCCCTGTCCTCG
GTTGTGGGAGGAAAGGGAGAGAGGGGAGGAGAAAGGGAGGGAGGGAGGGC
GCCTATGGTTGCAGCAGGTAGTCCCACTCCTATTGCTAGCACGGCTGCCA
GCAGTCACAGCATTGCCAGTAGTGGAGGCCTCAGCAGTAGCAACCGCAGC
AGTAGCAATAGCAGCGGCGGCGACAGCAGCAGCATCGACGATAACAGCAG
TGCCATTGTGTCTGCTGCGCTCAGGCGACGCTTCCCTTGCTTCTTCTCCT
CCCCCTTCGCCTCCTCCATCTCCTCGATACGCGCGCTGGCAGCAGCCAAT
GCTAGCGCTGCTGCTGTTTCTACTGCCACTGCCACCTCTTGTGATACTAC
CACTGCTCCTTCTACTATTGCAGCTGCTCCTGCTGCTCCTGCTGCTACAG
CTGCTACTACTGCTGCTGTAACTAGTTCCCCCTCCTCCTGCTTCTCTGGA
CCCAGCGAGGCCTCTTCATCCTGCACCTCCGGCGATGTTAGAAGGCATAT
TACATCACTAGCCCCCTCGCCCTCATCCCCCCTGTCCCTCTTGTCCCCTC
TTCCTTCTCCCTCTCGATCCTTCGACAAGAAAAAAAACGTCAGTCATTGG
GCGCGACTGCGGCAGGCAGTAAACCAGACCCGCCTCACTCGACTAAAGAA
CTCGGTCCTGGATGACTCTACGCACGGCAGGGGTACCCGGAAGGGGGGGA
AAGAATATGGACGTTTGGAAGAATGGGCAGGAGGTGTGTCGGAATGCGAG
GCATTTACTTTCATGGAGGGGGAGGAAGGGGAAGAGGAAGGGAAAGACGG
AGGGAAGGAGGCGTTAGGAAAAAGGGTGATTGAGATGGAGATGTTGACAG
TTCTGGAACGGAGTTTGCATGGTGGGATGAATGGAGGAAGGGACGGAGGG
AGGGATGGAGGGCTTGGTCAAGTATCGATTGCGATTCCACCGGGGATGAC
AGACGCGGGCATGAGGGGAGGAAAGGAGGGAGGGAAGGAGGAAAGGACGA
TGTAA

Synonyms

Publications