NO30G01310.1, NO30G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G01310.1
Unique NameNO30G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2217
Alignment locationchr30:480610..483961 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:480610..483961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G01310NO30G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G01310.1NO30G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G01310.1.cds1NO30G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01310.1.cds2NO30G01310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01310.1.cds3NO30G01310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01310.1.cds4NO30G01310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01310.1.cds5NO30G01310.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01310.1.cds6NO30G01310.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01310.1.cds7NO30G01310.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01310.1.cds8NO30G01310.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G01310.1 ID=NO30G01310.1|Name=NO30G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp
ATGCATGAACACCATGAACACAACAGGACCCCTTCCTCAGCTCCCAGCAG
CAGTAGCAGTAGCAGCAGTAGCAGTAGCAGTAGTTGCAACAGCAGTAGCA
GTAGTAGCAGCAGCAGCAGCAGTTCTACTACATCCCCCTGGTATACTTCT
CAATCTCCTTGTCCTCCACGACGACAAGAGTCAAAAGAAACAGATGGGAA
AGAAGACAAAAAAGAAGAATATGAAGAAGGAGGAGGAGGAGGAGCAGCAG
CAGCAGCAGCAGCAGCAGCACTACCCACTGCCCTATCCCTTGCGACAGAG
TGGCATGATGCCAGCCTCGCCCGAACACAGCGACGCATCCTCCGGGAGAC
GAGAGAGAAGCTTAAACACCTAGTGACGCCGGGTACGGGCTCGGCCGTGG
CACACGACATCCAGGCAAGGGGCGCTCTGCGAGCCGAAGAGGCGCGTCAC
CATCACGCCATCGCCCTCCTCCGTGAGCAGCAACAAGGCGTCTATGCAGC
CGCCCAAGCCCGTCACCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCC
TTCCTTCCTTCCTTCCTCGGGGGGGAGGCAGGAGAAGGCAGTCGGAAGAG
ACGAAGAGAGCTAGGGCCTTGCTCGGCTTAGGGCTGGAGGGAGGGAGGGA
GGGAGGGAGGGGGGCGTATGAGGGGGTGAGGGCGACCTGGAAGGCGATGG
TGGAGGGGCTGCTTTTGGGGGGGGAGGGAGGGAGGGACGGACGGACGGAC
GGACGGACGGAGGCTTTCCCGACATTGTGTGGAAACCGGTGTCGGCTGCG
GGGGAGACGGAAGGAGGGAAAGGTGGATGGAAAGGAGGGGGAGAAGGAAG
AGGAGGAGGGGGAGGGGGAAGAGGAGGAGGAGAAGGAGGACATCCACTTG
CTTTGTTTTTTGCAGGGGGCGTCCACCACCTCTCTCCCTCCTTCCCTCCC
TCTTCCCCTCCCTCCCCCTCCTCCTCCTCTTCCCCTTCCCCCTCACCACC
ACCCTCTTGTGCAGGGGGCCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGAGGATGCCTTCTGGGAACGCCTCTTTCGTGTTCCCCCCAACTTTTC
CTCCCGGGCCTCACGGAGGAACAAGGAGAAGGAGGAGGAGGACAGCGAAA
CGGACAGGCATCCCCTGGGCTCGGCCATGACTAGTTTCGCCTTCTACCTG
GAGGCGAGGTTCGGAGGGCGGGAGGGAGGGCGGGGGGATGTGCAGGCGCA
GGAGATGGTGGAGGACGTGAAGACTTTCCTCTCCCTCCTCTTTTGCGCCC
TCACTCGGCTTGGAGTCCCTCTCCGACGGCGGCAGCAGCAGCAGCAGTGG
CAGTCCAAAGAGGAGAAAGAGGAGAAAGGGACGGACGGTGGAGGGGAAGA
AGCAGTGGTTCGGTGCGTGTTCGCCGTGATCCAGCCGTGGGTGTTAATGG
TGTGTGGGAGGGCAAGGAGGAGGACAAGGGATGGATGGAGGAACGCCTGG
CCGGTGCTAGGGTCGCTGCAGGAGGAGGAGGTGGTGGCGAGGCTCGGCCT
CCTCCCTTTCCGCCGGCACCATCCCTCCCTTCCTCGTGCCCTCTTCCTCC
TCCTCTCCCTCGAGCAGGCCAGTAGCCCCGTGGAGAAGGCGCGGTGTCTC
TGCCGAACCTTACGCTTGCTGGGAAGAGGAGGAGGATGGCGGGAAGGAGG
GGGGGAGGGAGGGAGGGAGGGTGACATCTCCTCGGATGAGCTTTTGCCCC
TGCTTCAATTTCTCTTGTACCAAATCTCCCGTCCTCCTCTCCGCCCTCCC
TTCCTTCCACCCACCCTACCTCCCTCACCGCAGCAGGAAAAAAATGAGGT
GAAAAGGAAAGAGGGGAAGGAAGACCTTTCGTCCTCGCTCCCGCCCTCCA
CCTCCTCCTCCCCCGCCTCCTTCCCCCCGGCCTCCTTCTGCCACTCCCTA
CCCTCCTTCTCTTACTCCTTCCTTTCCTCCCTTCCCGCCCAACTTGATCT
GATTGAGCGCTTTCTTCCTGAGGAGCTGCTGGGACGAGAAGAAGGTTTTT
GCCTCTGCACCTTCCAAGCCGCCCTGCTGGACCTCTGTCACTCGAGAGGA
GGGGAAGGGGGTGGAGGAAGAGTGGGAGGGAGGGACGGAGGGCGGGAGGG
AAGACGGGAATCTTTCAGGATGGGAGTGTCGCGGTCATTGTCGCTATCCA
GTGATGCATCTTGGTGA
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protein sequence of NO30G01310.1

>NO30G01310.1-protein ID=NO30G01310.1-protein|Name=NO30G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=739bp
MHEHHEHNRTPSSAPSSSSSSSSSSSSSCNSSSSSSSSSSSSTTSPWYTS
QSPCPPRRQESKETDGKEDKKEEYEEGGGGGAAAAAAAAALPTALSLATE
WHDASLARTQRRILRETREKLKHLVTPGTGSAVAHDIQARGALRAEEARH
HHAIALLREQQQGVYAAAQARHPPSHPPSLPPSLPSFLPRGGGRRRQSEE
TKRARALLGLGLEGGREGGRGAYEGVRATWKAMVEGLLLGGEGGRDGRTD
GRTEAFPTLCGNRCRLRGRRKEGKVDGKEGEKEEEEGEGEEEEEKEDIHL
LCFLQGASTTSLPPSLPLPLPPPPPPLPLPPHHHPLVQGAGREGGREGGR
EEDAFWERLFRVPPNFSSRASRRNKEKEEEDSETDRHPLGSAMTSFAFYL
EARFGGREGGRGDVQAQEMVEDVKTFLSLLFCALTRLGVPLRRRQQQQQW
QSKEEKEEKGTDGGGEEAVVRCVFAVIQPWVLMVCGRARRRTRDGWRNAW
PVLGSLQEEEVVARLGLLPFRRHHPSLPRALFLLLSLEQASSPVEKARCL
CRTLRLLGRGGGWREGGGEGGREGDISSDELLPLLQFLLYQISRPPLRPP
FLPPTLPPSPQQEKNEVKRKEGKEDLSSSLPPSTSSSPASFPPASFCHSL
PSFSYSFLSSLPAQLDLIERFLPEELLGREEGFCLCTFQAALLDLCHSRG
GEGGGGRVGGRDGGREGRRESFRMGVSRSLSLSSDASW*
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mRNA from alignment at chr30:480610..483961-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G01310.1 ID=NO30G01310.1|Name=NO30G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3352bp|location=Sequence derived from alignment at chr30:480610..483961- (Nannochloropsis oceanica)
ATGCATGAACACCATGAACACAACAGGACCCCTTCCTCAGCTCCGTGCGT
CTGTCTCCCTGCTCCTCCACCTGACCCTACGCACACATGCCATGATACCA
CCGTCTGCTTCGATCAGCAATATCTTTTTGATCCAGTAATCCCCCGGGCT
TAGTGATCAAACCCTCCGCAGAGCAGCAGCAGCAGTAGCAGTAGCAGCAG
TAGCAGTAGCAGTAGTTGCAACAGCAGTAGCAGTAGTAGCAGCAGCAGCA
GCAGTTCTACTACATCCCCCTGGTATACTTCTCGTCATGCGGCCCTTCAG
CAGCAGCATCAATAGAAATAGTGACAGGACTTGCCACACAGCCAATACCT
CGGGCTCGACACCCCGCCAAGACACCATCACTGCTGCCTGCCTCCCTCCC
TCCCTCCCCCATTCCCTACTTCCCCCCCCCTCCCAAGCCTCCTCGTCGTT
TGTCCCTATTCTCTCCTTCCCTTCCTCCTTCCCTTCCTCCTCCTCTATCT
ATTTCCGCTCCGCTCGTAGAATCTCCTTGTCCTCCACGACGACAAGAGTC
AAAAGAAACAGATGGGAAAGAAGACAAAAAAGAAGAATATGAAGAAGGAG
GAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCACTACCCACTGCC
CTATCCCTTGCGACAGAGTGGCATGATGCCAGCCTCGCCCGAACACAGGT
GAAGCTCTCCATCCCTCGCTCCCTTGCTTCCTTGTTTCCTTCCTCAACAC
CCCACAGGAAAGTATGCTTTCCCTTTCCTCTTTTATTCCTTCTCTTGTAT
TCACCCTTCTTCGCTTTTGCCCTCCCTCCCTCTCTCTTTCCTTCCGTCCC
TCCCCTTGATCCCAGCGACGCATCCTCCGGGAGACGAGAGAGAAGCTTAA
ACACCTAGTGACGCCGGGTACGGGCTCGGCCGTGGCACACGACATCCAGG
CAAGGGGCGCTCTGCGAGTAAGGAAGGAGGGAGGGAGGGACGAAGGGAGG
GAGGGAGGAGAGGGACTAACGAGCTTCATCTCTCCATCTCACCTTCCCTC
CCTCCCTCCCTATCTCCCGTCTCACCAGGCCGAAGAGGCGCGTCACCATC
ACGCCATCGCCCTCCTCCGTGAGCAGCAACAAGGCGTCTATGCAGCCGCC
CAAGCCCGTCACCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCTTCC
TTCCTTCCTTCCTCGGGGGGGAGGCAGGAGAAGGCAGTCGGAAGAGACGA
AGAGAGCTAGGGCCTTGCTCGGCTTAGGGCTGGAGGGAGGGAGGGAGGGA
GGGAGGGGGGCGTATGAGGGGGTGAGGGCGACCTGGAAGGCGATGGTGGA
GGGGCTGCTTTTGGGGGGGGAGGGAGGGAGGGACGGACGGACGGACGGAC
GGACGGAGGCTTTCCCGACATTGTGTGGAAACCGGTGTCGGCTGCGGGGG
AGACGGAAGGAGGGAAAGGTGGATGGAAAGGAGGGGGAGAAGGAAGAGGA
GGAGGGGGAGGGGGAAGAGGAGGAGGAGAAGGAGGACATCCACTTGCTTT
GTTTTTTGCAGGGGTGAGGAATGAGGAAGGGAGAGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGAAAGAGAGGGAGAGTTTTTCCCTTTGACACT
GTCAGTCTCTCACAACGTGATTTTTACCCTTCCCTCCCTCCCTCCCTCCC
GCCTTCCCTCCCTCTCTTCCTCGTCCCAAACCTACCCAGCCGCTTCCTCC
TCTCGTGAGCAGGGCGTCCACCACCTCTCTCCCTCCTTCCCTCCCTCTTC
CCCTCCCTCCCCCTCCTCCTCCTCTTCCCCTTCCCCCTCACCACCACCCT
CTTGTGCAGGGGGCCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGA
GGATGCCTTCTGGGAACGCCTCTTTCGTGTTCCCCCCAACTTTTCCTCCC
GGGCCTCACGGAGGGTAGGGAGGGAGGGAAGAAGGAAAGAGGGAAGGGAA
GGAGGCGGAGGAGAAGAGGAAGAAAGGCACGGCGGCAGAGGCATGTGCAC
ACGCGTATACCCACTCATTCCTCCCTCCATCCCTCCCTCTCTCCTCCCCC
CTCAGAACAAGGAGAAGGAGGAGGAGGACAGCGAAACGGACAGGCATCCC
CTGGGCTCGGCCATGACTAGTTTCGCCTTCTACCTGGAGGCGAGGTTCGG
AGGGCGGGAGGGAGGGCGGGGGGATGTGCAGGCGCAGGAGATGGTGGAGG
ACGTGAAGACTTTCCTCTCCCTCCTCTTTTGCGCCCTCACTCGGCTTGGA
GTCCCTCTCCGACGGCGGCAGCAGCAGCAGCAGTGGCAGTCCAAAGAGGA
GAAAGAGGAGAAAGGGACGGACGGTGGAGGGGAAGAAGCAGTGGTTCGGT
GCGTGTTCGCCGTGATCCAGCCGTGGGTGTTAATGGTGTGTGGGAGGGCA
AGGAGGAGGACAAGGGATGGATGGAGGAACGCCTGGCCGGTGCTAGGGTC
GCTGCAGGAGGAGGAGGTGGTGGCGAGGTGAGGGAGGGAGGGAGGGGAGA
GAGACGAAAACTCAAAAAATGCGAGCCTTCCTTCTTTGTATCACACAATT
CTCACCCTCTTATCTTCCTTTCACCTCCCGCCCTCCCTCCTTCCCTTCCC
CCCCCTCTCCCTCCTTCCCTTGTCAGGCTCGGCCTCCTCCCTTTCCGCCG
GCACCATCCCTCCCTTCCTCGTGCCCTCTTCCTCCTCCTCTCCCTCGAGC
AGGCCAGTAGCCCCGTGGAGAAGGCGCGGTGTCTCTGCCGAACCTTACGC
TTGCTGGGAAGAGGAGGAGGATGGCGGGAAGGAGGGGGGGAGGGAGGGAG
GGAGGGTGACATCTCCTCGGATGAGCTTTTGCCCCTGCTTCAATTTCTCT
TGTACCAAATCTCCCGTCCTCCTCTCCGCCCTCCCTTCCTTCCACCCACC
CTACCTCCCTCACCGCAGCAGGAAAAAAATGAGGTGAAAAGGAAAGAGGG
GAAGGAAGACCTTTCGTCCTCGCTCCCGCCCTCCACCTCCTCCTCCCCCG
CCTCCTTCCCCCCGGCCTCCTTCTGCCACTCCCTACCCTCCTTCTCTTAC
TCCTTCCTTTCCTCCCTTCCCGCCCAACTTGATCTGATTGAGCGCTTTCT
TCCTGAGGAGCTGCTGGGACGAGAAGAAGGTTTTTGCCTCTGCACCTTCC
AAGCCGCCCTGCTGGACCTCTGTCACTCGAGAGGAGGGGAAGGGGGTGGA
GGAAGAGTGGGAGGGAGGGACGGAGGGCGGGAGGGAAGACGGGAATCTTT
CAGGATGGGAGTGTCGCGGTCATTGTCGCTATCCAGTGATGCATCTTGGT
GA
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Coding sequence (CDS) from alignment at chr30:480610..483961-

>NO30G01310.1 ID=NO30G01310.1|Name=NO30G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=2217bp|location=Sequence derived from alignment at chr30:480610..483961- (Nannochloropsis oceanica)
ATGCATGAACACCATGAACACAACAGGACCCCTTCCTCAGCTCCCAGCAG
CAGTAGCAGTAGCAGCAGTAGCAGTAGCAGTAGTTGCAACAGCAGTAGCA
GTAGTAGCAGCAGCAGCAGCAGTTCTACTACATCCCCCTGGTATACTTCT
CAATCTCCTTGTCCTCCACGACGACAAGAGTCAAAAGAAACAGATGGGAA
AGAAGACAAAAAAGAAGAATATGAAGAAGGAGGAGGAGGAGGAGCAGCAG
CAGCAGCAGCAGCAGCAGCACTACCCACTGCCCTATCCCTTGCGACAGAG
TGGCATGATGCCAGCCTCGCCCGAACACAGCGACGCATCCTCCGGGAGAC
GAGAGAGAAGCTTAAACACCTAGTGACGCCGGGTACGGGCTCGGCCGTGG
CACACGACATCCAGGCAAGGGGCGCTCTGCGAGCCGAAGAGGCGCGTCAC
CATCACGCCATCGCCCTCCTCCGTGAGCAGCAACAAGGCGTCTATGCAGC
CGCCCAAGCCCGTCACCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCC
TTCCTTCCTTCCTTCCTCGGGGGGGAGGCAGGAGAAGGCAGTCGGAAGAG
ACGAAGAGAGCTAGGGCCTTGCTCGGCTTAGGGCTGGAGGGAGGGAGGGA
GGGAGGGAGGGGGGCGTATGAGGGGGTGAGGGCGACCTGGAAGGCGATGG
TGGAGGGGCTGCTTTTGGGGGGGGAGGGAGGGAGGGACGGACGGACGGAC
GGACGGACGGAGGCTTTCCCGACATTGTGTGGAAACCGGTGTCGGCTGCG
GGGGAGACGGAAGGAGGGAAAGGTGGATGGAAAGGAGGGGGAGAAGGAAG
AGGAGGAGGGGGAGGGGGAAGAGGAGGAGGAGAAGGAGGACATCCACTTG
CTTTGTTTTTTGCAGGGGGCGTCCACCACCTCTCTCCCTCCTTCCCTCCC
TCTTCCCCTCCCTCCCCCTCCTCCTCCTCTTCCCCTTCCCCCTCACCACC
ACCCTCTTGTGCAGGGGGCCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGAGGATGCCTTCTGGGAACGCCTCTTTCGTGTTCCCCCCAACTTTTC
CTCCCGGGCCTCACGGAGGAACAAGGAGAAGGAGGAGGAGGACAGCGAAA
CGGACAGGCATCCCCTGGGCTCGGCCATGACTAGTTTCGCCTTCTACCTG
GAGGCGAGGTTCGGAGGGCGGGAGGGAGGGCGGGGGGATGTGCAGGCGCA
GGAGATGGTGGAGGACGTGAAGACTTTCCTCTCCCTCCTCTTTTGCGCCC
TCACTCGGCTTGGAGTCCCTCTCCGACGGCGGCAGCAGCAGCAGCAGTGG
CAGTCCAAAGAGGAGAAAGAGGAGAAAGGGACGGACGGTGGAGGGGAAGA
AGCAGTGGTTCGGTGCGTGTTCGCCGTGATCCAGCCGTGGGTGTTAATGG
TGTGTGGGAGGGCAAGGAGGAGGACAAGGGATGGATGGAGGAACGCCTGG
CCGGTGCTAGGGTCGCTGCAGGAGGAGGAGGTGGTGGCGAGGCTCGGCCT
CCTCCCTTTCCGCCGGCACCATCCCTCCCTTCCTCGTGCCCTCTTCCTCC
TCCTCTCCCTCGAGCAGGCCAGTAGCCCCGTGGAGAAGGCGCGGTGTCTC
TGCCGAACCTTACGCTTGCTGGGAAGAGGAGGAGGATGGCGGGAAGGAGG
GGGGGAGGGAGGGAGGGAGGGTGACATCTCCTCGGATGAGCTTTTGCCCC
TGCTTCAATTTCTCTTGTACCAAATCTCCCGTCCTCCTCTCCGCCCTCCC
TTCCTTCCACCCACCCTACCTCCCTCACCGCAGCAGGAAAAAAATGAGGT
GAAAAGGAAAGAGGGGAAGGAAGACCTTTCGTCCTCGCTCCCGCCCTCCA
CCTCCTCCTCCCCCGCCTCCTTCCCCCCGGCCTCCTTCTGCCACTCCCTA
CCCTCCTTCTCTTACTCCTTCCTTTCCTCCCTTCCCGCCCAACTTGATCT
GATTGAGCGCTTTCTTCCTGAGGAGCTGCTGGGACGAGAAGAAGGTTTTT
GCCTCTGCACCTTCCAAGCCGCCCTGCTGGACCTCTGTCACTCGAGAGGA
GGGGAAGGGGGTGGAGGAAGAGTGGGAGGGAGGGACGGAGGGCGGGAGGG
AAGACGGGAATCTTTCAGGATGGGAGTGTCGCGGTCATTGTCGCTATCCA
GTGATGCATCTTGGTGA
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Synonyms
Publications