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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr30 | genome | chr30:456737..460854 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G01260.1 vs.
Match: EWM20724.1 (serine threonine kinase isoform cra_a [Nannochloropsis gaditana]) HSP 1 Score: 269.6 bits (688), Expect = 1.800e-68 Identity = 126/160 (78.75%), Postives = 138/160 (86.25%), Query Frame = 0
Query: 307 ILTFHDEAARDATNELKVLRAISHPSLLPLLASSSSLTPKGGQSCRVFYFLFPYCSRGSLWDAIARAKTEWPFTERVILRLFFGTCQGLLALHERDIAHWDIKPHNVLLSDQGQPLLMDFGSCCSPATQTVTDRRAGLLLEETAAARCSPAYRPPELTQV 467
+L FH+EA RDA NELKVLRA+ HPSLLPLL S ++ + KGG +CR FLFP+C RGSL DAI RA T+WPFTER +LR FFG CQGLLALHE DIAHWDIKPHNVLLSDQGQPLLMDFGSCCSPATQTVT+RRA LLLEE AAA+CSPAYRPPELTQV
Sbjct: 1 MLCFHEEAVRDAANELKVLRAVQHPSLLPLLDSLATRSSKGGHTCREMAFLFPFCRRGSLTDAIDRANTKWPFTEREVLRTFFGICQGLLALHEHDIAHWDIKPHNVLLSDQGQPLLMDFGSCCSPATQTVTERRAALLLEEQAAAKCSPAYRPPELTQV 160
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G01260.1 ID=NO30G01260.1|Name=NO30G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2909bp CGACTTTTCTGTGTAGCGTCTCTGCCGGAAGAAAGAGGAAGAAGGAGGGG GGGGGGCGAAGGGAGAAGGGAAGGGTGAGCGCTCTGAGAAGAGGGTGGAA GTATTTACATCGAGTAAAAGTAAAGGGGCGGACTAAAGTAGGTGGAGGAA TGAGACGATGCCCAGCTTATTTTGGGGGAGCAACATTCAAACACTTCGGT GTGATGGCCGAAGGAGACGTCGGAGGGTGAGGTGGTTCAAGTGGAGGGGT AATGGAAGAGAGGAGGTTGATTAAAAGCCATTCTGACAGCACACCAAGGC TGCAAACACACAAGGACTAATGCTGACAAAGGAAAGAGTACTGTCTAAGA TAGGGCCTTGGGACAGGACCCATAAGCGAAGAGGCTCAAAGAAGCAAGAC GACATAACTTTCAGACCCCGTTGAACCTGGATAAGTACATCCAGCAGGGG CATCCTCCGATTCCGAGCGGTAGAGCCAGCGGTAGCCGTAGCCACAGCAC GAAAGGAAAAAGACAAAATGATATAACGAAGAAACGATAGGAAGCCTTGG TGTTGATTGGGGTCGCGTATGCGTTTATCCGTGCGAGAGATCGAGAGACA GACAGTGCCTTTGATTATCTGACAATTATGTCAGACAAACACACTGTCAC ATAGTGCGAGAGAACGTCGTCGGACATGCGGCACAAACTGCGTACCCACT GCATGTAGAAAGTTTAAACACACACCCCTGCGACAATAGGTTCAGCTCTG GACTATGTTAACCTTTCTTTGGCTTTGCAAAACATCGTGACACGGTCCTG CATCTCGTGCGTATATCAGTCAGGCTGGAAGAGGGTTGGAATTGCGACGG TGGCCAGCTCTCTTCCTTGCCATCAAAAACGAGGGAAATCACAAATCACG ATCTTAGGTCTATATCCTTGTGCATGGAATTACGACATACCTTTGTCTTT TCAGTTTTTTTTTAAAACTCTCGTGGTCCAATTGTACATGGGCGAGGACA CGTACCACCCTCGCTTTATTTTGACCTGTTTGAGCAATTGGACTCTTGCT GCCGTGCTTAGACCCTTCGTAATGTGCCGCTGAACGCGCCCACACACCAT GCACGTATTACTAAGCGTGGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCATCAGTGGCATGTGGAAGTGAATGGCGTGCACAG AGTCTTGCGCCTGGTGATGATGCTGTATGCTGCTGCTTCCGAGCAAGCTT ACACCCTTCTTCAAGTCTCAGGAAGTGCGGCAAATAATCATGCCTCTCCC CCTCCGCGTCCTTTACACCATCCAAGGCTCCTCGTCGTTCTCCGACACTG CCGACGACGACGATGATGCCTCTTTCGCCTATCCCTGCTGCTTTGAGATG GACATGCCTTCTTCGGGATTGTTGAAGGCCCATGACGTCTTGGCCGCTTT TCCCCCGGCGGCGATGGCTGCTGAGGCCTTCGGGGAACCTTTGCGTGGGT GGCAGCTGGTGGCGCTCTCCGCCGACGGTCGGACACGCGTCGACCTGGCG CATCCTGCAGCCCTGATTCCTGTGGATGAGCGGGAAAGGACCGTGTGCCT AGAGGTAATCCCTCTTGCCCGCCCTCCTCTCTATACACGCGAAGCGATAC AAACTCGCCTCCGGAGCGAAAGGCAGCACCAGCACCAGCAGCAGCACCAC CAGCAGCAGCGAAAGGATCCTTCTCTCTCTCCTCGCCGACAAGCCCATCC CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCCTCCCTCCCTCCCACCCAACCACGTCACACCCGCACT CCTTCCTCCTCCACTCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCCT TCCCTCCTCCTCCTCCCTCTTCTCCGCCCTCGGCGGGGCCGTGGCCAAGG CGGCAGAACGCGCCACCTCCCTAGCCCAGGAAGCCATGGAGGGAGGGAGG GAGGGAGGGTGGGGGGCAGGAGCAGTGGTTGAGATGGAGGGAGGGAGGAG AGTGAGGATGGGTAGACAAGTGGCAGAGGGAGGCTTCAGTAAGGTCTTCC TGGCCAAAGATGAGGCCACGGGCGAGAGGCTGGCCCTAAAGCAAATCCTA ACCTTCCACGACGAGGCTGCAAGAGACGCCACCAACGAGCTCAAGGTCTT GCGCGCCATCTCCCACCCCTCCCTCCTCCCCCTCCTCGCTTCCTCCTCAT CTCTCACCCCAAAAGGAGGCCAATCCTGCCGGGTATTTTATTTTCTCTTC CCCTACTGCAGCCGAGGCAGTCTCTGGGATGCCATTGCGCGGGCTAAGAC TGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCCTTTTTTTCGGCACCT GCCAGGGCCTCCTTGCCCTCCACGAGAGGGATATCGCTCACTGGGACATT AAGCCTCACAACGTCCTCCTCTCCGACCAAGGGCAGCCCCTCCTCATGGA CTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCGTTACGGATCGACGCG CAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGATGCTCCCCGGCCTAT CGTCCTCCCGAGCTGACACAGGTAGGGAGGTAGAGAGGGAGGGAGGGAAA GAAAAAGGAAGGGAGGGAGAGAGGGAGGGATGGAAGGGAGAGAAGGCACT CGCCGGCTTACCGTCCTCCCGAGCTGACACAGATACGCCTCTCCCTCCTT TTAACCCTCCCTCATCCCCCTTCCCTCCCTCCCTCCCCTCTTCGTCTCTT CTTCTATCATTTCCCCCACACCGTCCGTGCCCGCTGCATCGAGCCCGTCA TCCCAACACCCATTTTTTCTTCCCTCCCAAAACCTTCCGTCACCCTTTCC CTCCCTCCC back to topprotein sequence of NO30G01260.1 >NO30G01260.1-protein ID=NO30G01260.1-protein|Name=NO30G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp MLLLPSKLTPFFKSQEVRQIIMPLPLRVLYTIQGSSSFSDTADDDDDASF AYPCCFEMDMPSSGLLKAHDVLAAFPPAAMAAEAFGEPLRGWQLVALSAD GRTRVDLAHPAALIPVDERERTVCLEVIPLARPPLYTREAIQTRLRSERQ HQHQQQHHQQQRKDPSLSPRRQAHPSSSSSSSSSSSSSSSSSSSSSSLPP TQPRHTRTPSSSTPSSSSSSSSSSLPSSSSLFSALGGAVAKAAERATSLA QEAMEGGREGGWGAGAVVEMEGGRRVRMGRQVAEGGFSKVFLAKDEATGE RLALKQILTFHDEAARDATNELKVLRAISHPSLLPLLASSSSLTPKGGQS CRVFYFLFPYCSRGSLWDAIARAKTEWPFTERVILRLFFGTCQGLLALHE RDIAHWDIKPHNVLLSDQGQPLLMDFGSCCSPATQTVTDRRAGLLLEETA AARCSPAYRPPELTQVGR* back to topmRNA from alignment at chr30:456737..460854+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G01260.1 ID=NO30G01260.1|Name=NO30G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=4118bp|location=Sequence derived from alignment at chr30:456737..460854+ (Nannochloropsis oceanica) CGACTTTTCTGTGTAGCGTCTCTGCCGGAAGAAAGAGGAAGAAGGAGGGG
GGGGGGCGAAGGGAGAAGGGAAGGGTGAGCGCTCTGAGAAGAGGGTGGAA
GTATTTACATCGAGTAAAAGTAAAGGGGCGGACTAAAGTAGGTGGAGGAA
TGAGACGATGCCCAGCTTATTTTGGGGGAGCAACATTCAAACACTTCGGT
GTGATGGCCGAAGGAGACGTCGGAGGGTGAGGTGGTTCAAGTGGAGGGGT
AATGGAAGAGAGGAGGTTGATTAAAAGCCATTCTGACAGCACACCAAGGC
TGCAAACACACAAGGACTAATGCTGACAAAGGAAAGAGTACTGTCTAAGA
TAGGGCCTTGGGACAGGACCCATAAGCGAAGAGGCTCAAAGAAGCAAGAC
GACATAACTTTCAGACCCCGTTGAACCTGGATAAGTACATCCAGCAGGGG
CATCCTCCGATTCCGAGCGGTAGAGCCAGCGGTAGCCGTAGCCACAGCAC
GAAAGGAAAAAGACAAAATGATATAACGAAGAAACGATAGGAAGCCTTGG
TGTTGATTGGGGTCGCGTATGCGTTTATCCGTGCGAGAGATCGAGAGACA
GACAGTGCCTTTGATTATCTGACAATTATGTCAGACAAACACACTGTCAC
ATAGTGCGAGAGAACGTCGTCGGACATGCGGCACAAACTGCGTACCCACT
GCATGTAGAAAGTTTAAACACACACCCCTGCGACAATAGGTTCAGCTCTG
GACTATGTTAACCTTTCTTTGGCTTTGCAAAACATCGTGACACGGTCCTG
CATCTCGTGCGTATATCAGTCAGGCTGGAAGAGGGTTGGAATTGCGACGG
TGGCCAGCTCTCTTCCTTGCCATCAAAAACGAGGGAAATCACAAATCACG
ATCTTAGGTCTATATCCTTGTGCATGGAATTACGACATACCTTTGTCTTT
TCAGTTTTTTTTTAAAACTCTCGTGGTCCAATTGTACATGGGCGAGGACA
CGTACCACCCTCGCTTTATTTTGACCTGTTTGAGCAATTGGACTCTTGCT
GCCGTGCTTAGACCCTTCGTAATGTGCCGCTGAACGCGCCCACACACCAT
GCACGTATTACTAAGCGTGGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCATCAGTGGCATGTGGAAGTGAATGGCGTGCACAG
AGTCTTGCGCCTGGTGATGATGCTGTATGCTGCTGCTTCCGAGCAAGCTT
ACACCCTTCTTCAAGTCTCGTACGTATCACATGACGGGGACCGTCATCAC
ACAGCTCCACCTCCACATACACTCACGTCTCCTGCTGCCTCTGTTTTCCT
GGGCTCGACTGCATCCAACCCACCCCTCTCTCCTATCCCCCCCCCCCCCA
CACACAGAGGAAGTGCGGCAAATAATCATGCCTCTCCCCCTCCGCGTCCT
TTACACCATCCAAGGCTCCTCGTCGTTCTCCGACACTGCCGACGACGACG
ATGATGCCTCTTTCGCCTATCCCTGCTGCTTTGAGATGGACATGCCTTCT
TCGGGATTGTTGAAGGCCCATGACGTCTTGGCCGCTTTTCCCCCGGCGGC
GATGGCTGCTGAGGTGAGGGAAGAAAGGAGGGAAGGAGGGGGGGCGCTTT
CCTCCCCAAGTATCTCTCAGGCATTAAACAGTGGCTTGACCTACCCCTCT
ATCCCTCCCTCCAGGCCTTCGGGGAACCTTTGCGTGGGTGGCAGCTGGTG
GCGCTCTCCGCCGACGGTCGGACACGCGTCGACCTGGCGCATCCTGCAGC
CCTGATTCCTGTGGATGAGCGGGAAAGGACCGTGTGCCTAGAGGTTGGTA
TCCTCGGTCTCCTACCTTCCTCCCTCTTTCCCTTTCACCCTCCCTCCCTC
CGTCTATTCATTCACTCTTCCACCCCCCCTACCCCCGTTCCCACTTACTC
ACTTATCCTTCCCCTTCCCTCCAGGTAATCCCTCTTGCCCGCCCTCCTCT
CTATACACGCGAAGCGATACAAACTCGCCTCCGGAGCGAAAGGCAGCACC
AGCACCAGCAGCAGCACCACCAGCAGCAGCGAAAGGATCCTTCTCTCTCT
CCTCGCCGACAAGCCCATCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTCCCACCC
AACCACGTCACACCCGCACTCCTTCCTCCTCCACTCCCTCCTCCTCCTCC
TCCTCCTCCTCTTCCTCCCTTCCCTCCTCCTCCTCCCTCTTCTCCGCCCT
CGGCGGGGCCGTGGCCAAGGCGGCAGAACGCGCCACCTCCCTAGCCCAGG
AAGCCATGGAGGGAGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTT
GAGATGGAGGGAGGGAGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGG
AGGCTTCAGTAAGGTGAGGAGGGAGGGCGGAACGGCGAGCGGGAGGGCGG
GAGGGAGGGAAGAAGGCACGGATACATAGATTTATATCCCCCCACTCTCA
AATGCAGGAAACATCTGACCTTCCTCCCTCCCTCCAGGTCTTCCTGGCCA
AAGATGAGGCCACGGGCGAGAGGCTGGCCCTAAAGCAAATCCTAACCTTC
CACGACGAGGCTGCAAGAGACGCCACCAACGAGCTCAAGGTATGTCCTCC
CTCCCTCCCTCCATCCATCCCTCCCTCATTCCTTCCCTCCCTCTTTTCGT
TTCTCCGAGCACTCTCTTCACTTCCTCTCCCTCTTTCTCTCCCTCTCCCT
CCCTCCCTCCCTCCCTCAGGTCTTGCGCGCCATCTCCCACCCCTCCCTCC
TCCCCCTCCTCGCTTCCTCCTCATCTCTCACCCCAAAAGGAGGCCAATCC
TGCCGGGTATTTTATTTTCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTG
GGATGCCATTGCGCGGTAAGCGCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTGTACTCGTCGAGTGACGCAATCTTGCCGCCCCTCCCTCTATCC
CTCCCTCTATCCCTCCCTCTATCCCTCCCTCTATCCCTCCCTCTATCCCT
CAGGGCTAAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCCTTT
TTTTCGGCACCTGCCAGGGTACGTCCCCCTCCCTCCCTCCCTCCCTTCCC
CCCTCCCTCTCCTTTCCGCCTCTGTGGAAGATCTGGCATGTTACTCACAG
TGCCGTCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCACCACTCATTCACA
CTTCTCTACCTCATCCACCCCCCTTTCCTTCCTCCCTCCCTCCATCCCTC
CATCCCTCCCTTCCTCCCTGCCAGGCCTCCTTGCCCTCCACGAGAGGGAT
ATCGCTCACTGGGACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAGG
GCAGGTAGGCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCTTTCCACCTCAGTGGAAGATCTGGCATGTGACCCAAATGCCGT
CCCCCCTCCCTCCCTCCCGCCCTCCTTCCCTATCACATCTTCACCTCCTC
AAACCCGTCATTCCGACACCCGTATTACCTTCCCGCTCTTCTTCTCCCCC
CCCCCAAACCCATGCCCTCCCTCCCTTCCTCCCTCCCTCCTTCAGCCCCT
CCTCATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCGTTACGG
ATCGACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGATGCTCC
CCGGCCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGTAGAGAGGGAG
GGAGGGAAAGAAAAAGGAAGGGAGGGAGAGAGGGAGGGATGGAAGGGAGA
GAAGGCACTCGCCGGCTTACCGTCCTCCCGAGCTGACACAGATACGCCTC
TCCCTCCTTTTAACCCTCCCTCATCCCCCTTCCCTCCCTCCCTCCCCTCT
TCGTCTCTTCTTCTATCATTTCCCCCACACCGTCCGTGCCCGCTGCATCG
AGCCCGTCATCCCAACACCCATTTTTTCTTCCCTCCCAAAACCTTCCGTC
ACCCTTTCCCTCCCTCCC back to topCoding sequence (CDS) from alignment at chr30:456737..460854+ >NO30G01260.1 ID=NO30G01260.1|Name=NO30G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr30:456737..460854+ (Nannochloropsis oceanica) ATGCTGCTGCTTCCGAGCAAGCTTACACCCTTCTTCAAGTCTCAGGAAGT GCGGCAAATAATCATGCCTCTCCCCCTCCGCGTCCTTTACACCATCCAAG GCTCCTCGTCGTTCTCCGACACTGCCGACGACGACGATGATGCCTCTTTC GCCTATCCCTGCTGCTTTGAGATGGACATGCCTTCTTCGGGATTGTTGAA GGCCCATGACGTCTTGGCCGCTTTTCCCCCGGCGGCGATGGCTGCTGAGG CCTTCGGGGAACCTTTGCGTGGGTGGCAGCTGGTGGCGCTCTCCGCCGAC GGTCGGACACGCGTCGACCTGGCGCATCCTGCAGCCCTGATTCCTGTGGA TGAGCGGGAAAGGACCGTGTGCCTAGAGGTAATCCCTCTTGCCCGCCCTC CTCTCTATACACGCGAAGCGATACAAACTCGCCTCCGGAGCGAAAGGCAG CACCAGCACCAGCAGCAGCACCACCAGCAGCAGCGAAAGGATCCTTCTCT CTCTCCTCGCCGACAAGCCCATCCCTCCTCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTCCC ACCCAACCACGTCACACCCGCACTCCTTCCTCCTCCACTCCCTCCTCCTC CTCCTCCTCCTCCTCTTCCTCCCTTCCCTCCTCCTCCTCCCTCTTCTCCG CCCTCGGCGGGGCCGTGGCCAAGGCGGCAGAACGCGCCACCTCCCTAGCC CAGGAAGCCATGGAGGGAGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGT GGTTGAGATGGAGGGAGGGAGGAGAGTGAGGATGGGTAGACAAGTGGCAG AGGGAGGCTTCAGTAAGGTCTTCCTGGCCAAAGATGAGGCCACGGGCGAG AGGCTGGCCCTAAAGCAAATCCTAACCTTCCACGACGAGGCTGCAAGAGA CGCCACCAACGAGCTCAAGGTCTTGCGCGCCATCTCCCACCCCTCCCTCC TCCCCCTCCTCGCTTCCTCCTCATCTCTCACCCCAAAAGGAGGCCAATCC TGCCGGGTATTTTATTTTCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTG GGATGCCATTGCGCGGGCTAAGACTGAGTGGCCCTTCACCGAGCGCGTCA TCCTCCGCCTTTTTTTCGGCACCTGCCAGGGCCTCCTTGCCCTCCACGAG AGGGATATCGCTCACTGGGACATTAAGCCTCACAACGTCCTCCTCTCCGA CCAAGGGCAGCCCCTCCTCATGGACTTCGGATCTTGCTGCTCCCCTGCCA CTCAAACCGTTACGGATCGACGCGCAGGACTCCTTCTGGAAGAAACGGCC GCGGCCCGATGCTCCCCGGCCTATCGTCCTCCCGAGCTGACACAGGTAGG GAGGTAG back to top
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