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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr30 | genome | chr30:446911..450363 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G01230.1 vs.
Match: WP_099411514.1 (MFS transporter [Janthinobacterium sp. BJB304]; PHV36315.1 MFS transporter [Janthinobacterium sp. BJB304]) HSP 1 Score: 154.8 bits (390), Expect = 9.300e-34 Identity = 145/490 (29.59%), Postives = 211/490 (43.06%), Query Frame = 0
Query: 102 PHLLSFHLAWLSFFVCYFSWISPASLMPVLKKELNLTTSQVHLSHLATIGTPIIVRMMVGGYVDIYGPQRSMFILSVTGALPFFVGPYLIHDWVGVVCYRACISVLSASFVMCQAWTTSLYDREVVGQATALAAGWGNLGGAMTQIVMVDIHQLLDQELQGGRERGEAWRLTLMFPGILLLVMAGVVWKWGGGRGGGGRVGGRVGRRSDEAGGRKKKEMGGNNLLGREGGKEGGREGGKKEGDGLDRMPNRQEGGEGKKEERKEGRRTEDAWAAWMEAGREGGTWILALQYALSFGVELVTLNELASFISTSVAEGGMGRGVQDGGRMGWLAGVTNIGARFLGGWMSDFARKKVEERAGGREQGREGNGDSNGRVSEDKGEGGRRKGGRGMRGRMLVLFCFLVAEGAFLLGFSHVAGRQGGREGGRGGGSAYTWACVLVVLFSSCVQAASGAVYALVPYLSSSKGGASVAGIVGGGGNVGAVAFTLLFMG 592
P + +FHL W++FFVC+F+W + A LMPV+K E L+ +QV ++A + I+VR++VG D YGP+++ L + GA+P +G + + +R I + ASFV+ Q T+ ++ VVG A A AAGWGN GG Q +M LL L G WR+ L+ PG+L+LVMA + W++ + G G + EGGK GG+ GG + K W ++ G FG+E+ N A + G ++ G G+ + AR LGGW+SD K+ R G+ N RV+ F ++ EG LL F+ V + TWA + +++F A GA YALVP++ SK VAGI+G GGNVGAVA L G
Sbjct: 17 PPMRAFHLTWMAFFVCFFAWFACAPLMPVIKGEFGLSLAQVANINIAAVAITILVRLIVGPLCDRYGPRKTYTGLLLLGAIP-VLGVAASQSYESFLFFRLGIGAVGASFVITQYHTSVMFAPRVVGTANAAAAGWGNAGGGAAQALM---PLLLGAVLMLGVSESLGWRVALLVPGVLMLVMAVLYWRY---------------TQDCPEGNYSDLRKAGTAI---EGGKGGGKSGGW--------------------DSFKAASSNYRVWLLFVTYG-------------ACFGIEIFIHNIAAVYYVDH-----FGLSLKSAGLAAGSFGLLALFARALGGWLSD----KLALR-----------GNLNSRVTLL--------------------FMLMIGEGVGLLWFAKV--------------DSVTWAVIAMLVFGLFTHMACGATYALVPFI-DSKALGGVAGIIGAGGNVGAVAAGFLMKG 396
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G01230.1 ID=NO30G01230.1|Name=NO30G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2748bp GTTGAACATCGTTCCTGAAAAACGTTTGACCGAGTTGTGTTTACACAATT GACGTTTACAAACGTCTCACGAGGAAAAGAAATCGCTGACGTTAAGTGGA GGTGACGCTTTTGGGCATAGAGACGTAAAGGCCGGAGGTGGGTAGTGGTT TTTCGGCCCTTGGTAAACCTCCCCACTTTCACTTCCCTCAGCCAGCACAC ACACGTCTCGTGTTGTTGCTTCGCTCGTGCGTCAGTGGCTTCTTGCTTCA GCCACTCACCAACACAACAACGATTGATAAACCTTCTACGCCTTGGACAC GGGACATTTTCCTAACTCACGTATCAACATCGCATCTCCCAGTCCACACA CAGGAAGCACCCGCGCCGACGATCGATCATCGACCTCCCCACAGCCTTCT CGCTTCCGCCTGACCTCTTGTTTCGCTCGGCAGCGACCCAGTCAACCACA CCACTCGATTTCACCAAGTAATGGAGTACTAAAAAGGAGAACACAGGACG TGAGAGAATCCTGTCTTTGCCTGCCCACCTGCTCCTCGCTGGGCCCGGTA GCAATGATAAATGATGCAGCAACAGCTTCATCCTTTTCGTCCAGCCCTCC TCCCGTGGCGCTGACCATGAACGAAAATGCAGCAGACAGCAATAACAACA ACAAGAACAGCAGCGGCGGTATGGAGAACGGCAAACATACCGATTCTGCC ACCCACGATATTCCGCCACTACCACCACCGAGCGTCGGCTCCTCTCCCTC CCTCCATCATCCCTCTGCCCCCTCCTCTTTGCTCCAAAAGTCCTCCACCT TCCAACCCTTCGCCTGCTGCTACCCCTGTCCTCCCACTTCCCTTGCCTCC CTTCCTCCCCACCTCCTCTCCTTCCACCTAGCATGGCTTTCCTTCTTCGT CTGTTACTTCTCTTGGATCTCGCCAGCGTCGCTCATGCCTGTCTTAAAAA AGGAGTTAAATCTGACCACGTCCCAGGTGCACTTATCGCACCTGGCCACG ATAGGCACACCCATCATAGTGAGAATGATGGTGGGTGGGTACGTAGATAT ATACGGGCCGCAAAGAAGCATGTTCATTTTGTCAGTGACAGGCGCTCTTC CCTTCTTTGTGGGGCCCTATTTGATCCACGACTGGGTGGGTGTAGTGTGT TACCGCGCCTGCATCAGCGTGCTGAGCGCTTCCTTCGTAATGTGTCAAGC ATGGACAACCTCCCTTTATGACAGAGAGGTAGTAGGACAGGCCACTGCTC TAGCGGCGGGCTGGGGCAACCTTGGGGGGGCGATGACGCAGATTGTAATG GTTGATATCCATCAGTTGCTGGACCAGGAGCTTCAAGGAGGGAGGGAAAG GGGGGAGGCGTGGAGACTAACGTTGATGTTTCCGGGTATCTTGCTGCTGG TCATGGCCGGAGTGGTTTGGAAGTGGGGAGGAGGTCGAGGAGGAGGAGGG AGGGTAGGAGGGCGGGTGGGAAGGAGGAGTGATGAAGCAGGCGGACGAAA GAAGAAGGAGATGGGTGGTAATAATTTGCTGGGGAGGGAGGGAGGGAAGG AGGGAGGGAGGGAAGGAGGGAAGAAGGAGGGGGATGGTCTTGATAGAATG CCGAACAGGCAGGAGGGGGGGGAGGGAAAGAAGGAGGAAAGGAAGGAGGG AAGGAGGACGGAGGATGCCTGGGCGGCATGGATGGAGGCAGGGAGGGAGG GAGGGACGTGGATCCTTGCCTTGCAGTACGCTCTATCTTTCGGTGTCGAA TTGGTGACCCTCAACGAGCTAGCGTCATTTATCTCCACCTCGGTGGCCGA GGGAGGGATGGGACGAGGAGTGCAGGATGGAGGGAGGATGGGATGGTTGG CCGGGGTGACAAATATAGGCGCGAGGTTTCTAGGAGGTTGGATGTCGGAC TTTGCGCGGAAAAAGGTGGAAGAGAGAGCGGGGGGGAGAGAGCAGGGTAG GGAGGGGAACGGCGACAGTAACGGGAGAGTGTCGGAGGACAAGGGAGAGG GAGGGAGGAGAAAGGGAGGGAGGGGGATGAGGGGGAGGATGCTGGTATTG TTTTGTTTCCTCGTCGCTGAAGGCGCCTTTTTGCTTGGCTTCAGCCATGT GGCTGGCAGACAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGAGTGCTT ATACGTGGGCATGCGTACTGGTGGTGTTGTTTTCGTCGTGCGTTCAGGCG GCGAGCGGTGCTGTGTATGCTCTTGTTCCCTATTTAAGTAGCAGTAAAGG GGGTGCCAGCGTGGCTGGGATCGTGGGAGGGGGAGGGAACGTCGGTGCTG TTGCATTCACCTTGCTATTTATGGGGATGGATAGGGAAGCTAAGAGGAAG GGAGGGAAGGAGGGATTTCGAGTGATGGGCTTGGTGGTATTGGTAGGGGC GTGCGCGGTGTGGTTATTGGACCCCAAAAAGATGGAGGAGGGGCACAGGG AGGTGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAGGTTGAGAAGGGAGGA AGGGAGGACGGGGTCGCAGGAATGAGGAAGGAGGAAGAATGCGTGCTTGT TATCAGAAAAAGGGTAGACAGGGCTTTATAGAAGAGCAACATGGAATGCA AAATAAGAAAATTATCGAAAATTAATAATACGTAGGCGAATTCAATCTCT GCAAGACCTGGTTCGTGCAGAGGCCTGCACCTTACGCGCTAGCAGTCCAA CGAAGTAATGAAAGAATGACTTGACTGGCAATCACATCGCGTGAGGTA back to topprotein sequence of NO30G01230.1 >NO30G01230.1-protein ID=NO30G01230.1-protein|Name=NO30G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=676bp MINDAATASSFSSSPPPVALTMNENAADSNNNNKNSSGGMENGKHTDSAT HDIPPLPPPSVGSSPSLHHPSAPSSLLQKSSTFQPFACCYPCPPTSLASL PPHLLSFHLAWLSFFVCYFSWISPASLMPVLKKELNLTTSQVHLSHLATI GTPIIVRMMVGGYVDIYGPQRSMFILSVTGALPFFVGPYLIHDWVGVVCY RACISVLSASFVMCQAWTTSLYDREVVGQATALAAGWGNLGGAMTQIVMV DIHQLLDQELQGGRERGEAWRLTLMFPGILLLVMAGVVWKWGGGRGGGGR VGGRVGRRSDEAGGRKKKEMGGNNLLGREGGKEGGREGGKKEGDGLDRMP NRQEGGEGKKEERKEGRRTEDAWAAWMEAGREGGTWILALQYALSFGVEL VTLNELASFISTSVAEGGMGRGVQDGGRMGWLAGVTNIGARFLGGWMSDF ARKKVEERAGGREQGREGNGDSNGRVSEDKGEGGRRKGGRGMRGRMLVLF CFLVAEGAFLLGFSHVAGRQGGREGGRGGGSAYTWACVLVVLFSSCVQAA SGAVYALVPYLSSSKGGASVAGIVGGGGNVGAVAFTLLFMGMDREAKRKG GKEGFRVMGLVVLVGACAVWLLDPKKMEEGHREVVEEEGGREEEVEKGGR EDGVAGMRKEEECVLVIRKRVDRAL* back to topmRNA from alignment at chr30:446911..450363+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G01230.1 ID=NO30G01230.1|Name=NO30G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=3453bp|location=Sequence derived from alignment at chr30:446911..450363+ (Nannochloropsis oceanica) GTTGAACATCGTTCCTGAAAAACGTTTGACCGAGTTGTGTTTACACAATT
GACGTTTACAAACGTCTCACGAGGAAAAGAAATCGCTGACGTTAAGTGGA
GGTGACGCTTTTGGGCATAGAGACGTAAAGGCCGGAGGTGGGTAGTGGTT
TTTCGGCCCTTGGTAAACCTCCCCACTTTCACTTCCCTCAGCCAGCACAC
ACACGTCTCGTGTTGTTGCTTCGCTCGTGCGTCAGTGGCTTCTTGCTTCA
GCCACTCACCAACACAACAACGATTGATAAACCTTCTACGCCTTGGACAC
GGGACATTTTCCTAACTCACGTATCAACATCGCATCTCCCAGTCCACACA
CAGGAAGCACCCGCGCCGACGATCGATCATCGACCTCCCCACAGCCTTCT
CGCTTCCGCCTGACCTCTTGTTTCGCTCGGCAGCGACCCAGTCAACCACA
CCACTCGATTTCACCAAGTAATGGAGTACTAAAAAGGAGAACACAGGACG
TGAGAGAATCCTGTCTTTGCCTGCCCACCTGCTCCTCGCTGGGCCCGGTA
GCAATGATAAATGATGCAGCAACAGCTTCATCCTTTTCGTCCAGCCCTCC
TCCCGTGGCGCTGACCATGAACGAAAATGCAGCAGACAGCAATAACAACA
ACAAGAACAGCAGCGGCGGTATGGAGAACGGCAAACATACCGATTCTGCC
ACCCACGATATTCCGCCACTACCACCACCGAGCGTCGGCTCCTCTCCCTC
CCTCCATCATCCCTCTGCCCCCTCCTCTTTGCTCCAAAAGTCCTCCACCT
TCCAACCCTTCGCCTGCTGCTACCCCTGTCCTCCCACTTCCCTTGCCTCC
CTTCCTCCCCACCTCCTCTCCTTCCACCTAGCATGGCTTTCCTTCTTCGT
CTGTTACTTCTCTTGGATCTCGCCAGCGTCGCTCATGCCTGTCTTAAAAA
AGGAGTTAAATCTGACCACGTCCCAGGTGCACTTATCGCACCTGGCCACG
ATAGGCACACCCATCATAGTGAGAATGATGGTGGGTGGGTACGTAGATAT
ATACGGGCCGCAAAGAAGCATGTTCATTTTGTCAGTGACAGGTACGTTCC
TTCCCCTCTCTTCCTCTCTCCCTTCTTCCCTCCCTGCTCTAAGAGCGAAC
CACTCATTTCCCCCTCCCTTCTTCCTTCCCCCTCTCCTTCCCTAGGCGCT
CTTCCCTTCTTTGTGGGGCCCTATTTGATCCACGACTGGGTGGGTGTAGT
GTGTTACCGCGCCTGCATCAGCGTGCTGAGTAAGAAGTGCCCCTGCCTCC
TTCCCGCCCTCCCATCCTCCCTCCCTCTTTCCCTCCCTCCCTTCTTCCTC
TCTGCCCACCTCATCTGATGTCTCGTGCATCCTTCCTCCATGACCATCAC
ACTCGCTGCCTCAAGCCCGTCATATCGACTATCATATCTTCCATACACCT
CCACCACTCAATAACCGACCTACCCCTCCCTCCCTCCCACCCTCCCTCCC
TCCTTCCCTCTCTCCCTCCCTCCCCCTCTCTCAGGCGCTTCCTTCGTAAT
GTGTCAAGCATGGACAACCTCCCTTTATGACAGAGAGGTAGTAGGACAGG
CCACTGCTCTAGCGGCGGGCTGGGGCAACCTTGGGGGGGCGATGACGCAG
GTAGGGAGGGAGGGAGGAAGGGAGGAAGGGAGGGAGGGTGGCCAGAGAAA
GGGCGCGAAAAAGTTCGGAGTGTCAGAATGGTATCGAGGGTGGGTGGGAG
GGAGGGAGGGAGGGTGGGAGGGAAGGAGACAGAAACTCACTAAGCACGCC
TGCCTCCCTCCCTTCCTCCCCTCCTCCCTCTCTCTCTCCCCTAGATTGTA
ATGGTTGATATCCATCAGTTGCTGGACCAGGAGCTTCAAGGAGGGAGGGA
AAGGGGGGAGGCGTGGAGACTAACGTTGATGTTTCCGGGTATCTTGCTGC
TGGTCATGGCCGGAGTGGTTTGGAAGTGGGGAGGAGGTCGAGGAGGAGGA
GGGAGGGTAGGAGGGCGGGTGGGAAGGAGGAGTGATGAAGCAGGCGGACG
AAAGAAGAAGGAGATGGGTGGTAATAATTTGCTGGGGAGGGAGGGAGGGA
AGGAGGGAGGGAGGGAAGGAGGGAAGAAGGAGGGGGATGGTCTTGATAGA
ATGCCGAACAGGCAGGAGGGGGGGGAGGGAAAGAAGGAGGAAAGGAAGGA
GGGAAGGAGGACGGAGGATGCCTGGGCGGCATGGATGGAGGCAGGGAGGG
AGGGAGGGACGTGGATCCTTGCCTTGCAGTACGCTCTATCTTTCGGTGTC
GAATTGGTAGGTGCCTCAATCCTCCCTCCTTCCCTCCCTCCCTCCCTCCT
TCCCTCCCTCCCTCCCTCCCTTCCCACAATTTCGCCCTCCCTCCCTCCCT
CCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCTTTCCTCTCCTCT
TTTCCCAGGTGACCCTCAACGAGCTAGCGTCATTTATCTCCACCTCGGTG
GCCGAGGGAGGGATGGGACGAGGAGTGCAGGATGGAGGGAGGATGGGATG
GTTGGCCGGGGTGACAAATATAGGCGCGAGGTTTCTAGGAGGTTGGATGT
CGGACTTTGCGCGGAAAAAGGTGGAAGAGAGAGCGGGGGGGAGAGAGCAG
GGTAGGGAGGGGAACGGCGACAGTAACGGGAGAGTGTCGGAGGACAAGGG
AGAGGGAGGGAGGAGAAAGGGAGGGAGGGGGATGAGGGGGAGGATGCTGG
TATTGTTTTGTTTCCTCGTCGCTGAAGGCGCCTTTTTGCTTGGCTTCAGC
CATGTGGCTGGCAGACAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGAG
TGCTTATACGTGGGCATGCGTACTGGTGGTGTTGTTTTCGTCGTGCGTTC
AGGCGGCGAGCGGTGCTGTGTATGCTCTTGTTCCCTATTTAAGTAGCAGT
AAAGGGGGTGCCAGCGTGGCTGGGATCGTGGGAGGGGGAGGGAACGTCGG
TGCTGTTGCATTCACCTTGCTATTTATGGGGATGGATAGGGAAGCTAAGA
GGAAGGGAGGGAAGGAGGGATTTCGAGTGATGGGCTTGGTGGTATTGGTA
GGGGCGTGCGCGGTGTGGTTATTGGACCCCAAAAAGATGGAGGAGGGGCA
CAGGGAGGTGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAGGTTGAGAAGG
GAGGAAGGGAGGACGGGGTCGCAGGAATGAGGAAGGAGGAAGAATGCGTG
CTTGTTATCAGAAAAAGGGTAGACAGGGCTTTATAGAAGAGCAACATGGA
ATGCAAAATAAGAAAATTATCGAAAATTAATAATACGTAGGCGAATTCAA
TCTCTGCAAGACCTGGTTCGTGCAGAGGCCTGCACCTTACGCGCTAGCAG
TCCAACGAAGTAATGAAAGAATGACTTGACTGGCAATCACATCGCGTGAG
GTA back to topCoding sequence (CDS) from alignment at chr30:446911..450363+ >NO30G01230.1 ID=NO30G01230.1|Name=NO30G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at chr30:446911..450363+ (Nannochloropsis oceanica) ATGATAAATGATGCAGCAACAGCTTCATCCTTTTCGTCCAGCCCTCCTCC CGTGGCGCTGACCATGAACGAAAATGCAGCAGACAGCAATAACAACAACA AGAACAGCAGCGGCGGTATGGAGAACGGCAAACATACCGATTCTGCCACC CACGATATTCCGCCACTACCACCACCGAGCGTCGGCTCCTCTCCCTCCCT CCATCATCCCTCTGCCCCCTCCTCTTTGCTCCAAAAGTCCTCCACCTTCC AACCCTTCGCCTGCTGCTACCCCTGTCCTCCCACTTCCCTTGCCTCCCTT CCTCCCCACCTCCTCTCCTTCCACCTAGCATGGCTTTCCTTCTTCGTCTG TTACTTCTCTTGGATCTCGCCAGCGTCGCTCATGCCTGTCTTAAAAAAGG AGTTAAATCTGACCACGTCCCAGGTGCACTTATCGCACCTGGCCACGATA GGCACACCCATCATAGTGAGAATGATGGTGGGTGGGTACGTAGATATATA CGGGCCGCAAAGAAGCATGTTCATTTTGTCAGTGACAGGCGCTCTTCCCT TCTTTGTGGGGCCCTATTTGATCCACGACTGGGTGGGTGTAGTGTGTTAC CGCGCCTGCATCAGCGTGCTGAGCGCTTCCTTCGTAATGTGTCAAGCATG GACAACCTCCCTTTATGACAGAGAGGTAGTAGGACAGGCCACTGCTCTAG CGGCGGGCTGGGGCAACCTTGGGGGGGCGATGACGCAGATTGTAATGGTT GATATCCATCAGTTGCTGGACCAGGAGCTTCAAGGAGGGAGGGAAAGGGG GGAGGCGTGGAGACTAACGTTGATGTTTCCGGGTATCTTGCTGCTGGTCA TGGCCGGAGTGGTTTGGAAGTGGGGAGGAGGTCGAGGAGGAGGAGGGAGG GTAGGAGGGCGGGTGGGAAGGAGGAGTGATGAAGCAGGCGGACGAAAGAA GAAGGAGATGGGTGGTAATAATTTGCTGGGGAGGGAGGGAGGGAAGGAGG GAGGGAGGGAAGGAGGGAAGAAGGAGGGGGATGGTCTTGATAGAATGCCG AACAGGCAGGAGGGGGGGGAGGGAAAGAAGGAGGAAAGGAAGGAGGGAAG GAGGACGGAGGATGCCTGGGCGGCATGGATGGAGGCAGGGAGGGAGGGAG GGACGTGGATCCTTGCCTTGCAGTACGCTCTATCTTTCGGTGTCGAATTG GTGACCCTCAACGAGCTAGCGTCATTTATCTCCACCTCGGTGGCCGAGGG AGGGATGGGACGAGGAGTGCAGGATGGAGGGAGGATGGGATGGTTGGCCG GGGTGACAAATATAGGCGCGAGGTTTCTAGGAGGTTGGATGTCGGACTTT GCGCGGAAAAAGGTGGAAGAGAGAGCGGGGGGGAGAGAGCAGGGTAGGGA GGGGAACGGCGACAGTAACGGGAGAGTGTCGGAGGACAAGGGAGAGGGAG GGAGGAGAAAGGGAGGGAGGGGGATGAGGGGGAGGATGCTGGTATTGTTT TGTTTCCTCGTCGCTGAAGGCGCCTTTTTGCTTGGCTTCAGCCATGTGGC TGGCAGACAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGAGTGCTTATA CGTGGGCATGCGTACTGGTGGTGTTGTTTTCGTCGTGCGTTCAGGCGGCG AGCGGTGCTGTGTATGCTCTTGTTCCCTATTTAAGTAGCAGTAAAGGGGG TGCCAGCGTGGCTGGGATCGTGGGAGGGGGAGGGAACGTCGGTGCTGTTG CATTCACCTTGCTATTTATGGGGATGGATAGGGAAGCTAAGAGGAAGGGA GGGAAGGAGGGATTTCGAGTGATGGGCTTGGTGGTATTGGTAGGGGCGTG CGCGGTGTGGTTATTGGACCCCAAAAAGATGGAGGAGGGGCACAGGGAGG TGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAGGTTGAGAAGGGAGGAAGG GAGGACGGGGTCGCAGGAATGAGGAAGGAGGAAGAATGCGTGCTTGTTAT CAGAAAAAGGGTAGACAGGGCTTTATAG back to top
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