NO30G01130.6, NO30G01130.6 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G01130.6
Unique NameNO30G01130.6
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1868
Alignment locationchr30:415053..417661 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:415053..417661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G01130.6 vs.
Match: EWM27601.1 (esterase lipase [Nannochloropsis gaditana])

HSP 1 Score: 306.2 bits (783), Expect = 1.100e-79
Identity = 149/225 (66.22%), Postives = 179/225 (79.56%), Query Frame = 0 
Query:   57 AATAPALEMTSFFLPSRDGQHQLHVKRIRRAADPTAVSSSSPPPSSSSASRPVCLLFHGALSDGRVFYSVKSQKGLGCFLAREGNCDVFVADFRGRGMSSPPVAALHNHGQHELIVDDVRALSDGVRALLE----EEGKEG----GKQHWLAHSWGGIITSSTLTRFPTYVSSVASQVWFGTKRVISTHSLERTMKIDMVWGLAFPLLGKLYGYVPARKFKLGKE 274
            + ++P+LE+TS + PSRDG+H+LH KRIR+A         +  P ++S+ RPVCLLFHGALSDGRVFYSVKSQ+GLGC+LAR GNCDVFVADFRGRG+S PPV++L N+GQHELI+DDVRA SDGV AL+     EEG EG     +QHWLAHSWGGII SS L R P+Y SSVASQVWFG KRVIS  S E+  KID+VWGL FPLLGK+YG++PAR+FKLG +
Sbjct:   33 SVSSPSLEITSVYFPSRDGEHRLHTKRIRQA---------NALPGTASSPRPVCLLFHGALSDGRVFYSVKSQRGLGCYLARTGNCDVFVADFRGRGLSRPPVSSLSNYGQHELIIDDVRAFSDGVAALVAREKGEEGNEGHTYSARQHWLAHSWGGIILSSALARNPSYASSVASQVWFGAKRVISVKSWEKVFKIDLVWGLLFPLLGKIYGFIPARRFKLGAD 248
The following BLAST results are available for this feature:
BLAST of NO30G01130.6 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27601.11.100e-7966.22esterase lipase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G01130NO30G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G01130.6NO30G01130.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G01130.6.cds1NO30G01130.6.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01130.6.cds2NO30G01130.6.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01130.6.cds3NO30G01130.6.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01130.6.cds4NO30G01130.6.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01130.6.cds5NO30G01130.6.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01130.6.cds6NO30G01130.6.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G01130.6 ID=NO30G01130.6|Name=NO30G01130.6|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp
ACAGACGCCAAACATTGTCCCCAAGCTCCCTCTAGAGCCATGCTACTCCT
GAGAAGGCTCGGCTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCTTCCTCGCCTCTCCCCTCTCCCGTCGTGTCCTTGCCATGCCACTT
TGCCGCCTCTCCTCCTCCTCCAGCACCACTACAACCTCTACAACAAGCCC
CGCTGATGCCGCGACGGCACCCGCATTGGAGATGACCTCTTTTTTCCTTC
CCTCCCGCGACGGGCAGCATCAACTACACGTCAAGCGGATACGGAGGGCT
GCCGACCCTACTGCCGTTTCTTCATCAAGCCCACCACCTTCCTCCTCCTC
GGCTTCCCGACCAGTTTGCCTCCTCTTCCATGGGGCCCTCTCCGATGGCC
GGGTTTTCTATTCCGTGAAAAGCCAGAAAGGTCTGGGTTGCTTCCTGGCA
CGCGAAGGGAATTGCGATGTTTTTGTGGCGGATTTTCGAGGAAGGGGGAT
GAGCAGTCCTCCCGTCGCAGCACTCCACAACCACGGGCAGCACGAGCTGA
TTGTCGATGACGTCCGGGCCTTGAGTGATGGTGTCAGGGCCCTGCTGGAG
GAGGAAGGGAAGGAGGGAGGGAAGCAGCACTGGCTTGCTCATTCCTGGGG
TGGCATAATAACTTCCTCTACTTTGACGCGGTTTCCAACCTATGTCTCCT
CTGTCGCTTCTCAAGTGTGGTTTGGCACGAAACGAGTCATCTCCACGCAC
AGCTTAGAGAGGACAATGAAGATCGACATGGTCTGGGGCCTGGCATTTCC
GTTACTTGGGAAACTGTACGGTTACGTTCCCGCCCGGAAATTCAAATTGG
GTAAGGAAAGAAGGAGAGAGGAAGGGAGGGGAAAAAGGAGGGAATTATAG
AGAGAATAACTCAAACGAGTTCCTCTCTCTCAACCATAACCTTCGATCCT
CCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCC
CCTCAGGAGCAGACGATGAGCCCCTCCCGTTCCTCGAGGAGTGCTCTGTG
TGGGTTCGAGGGGGAGACTGGGTAGACGTTAAGGACGGTTTCGATCACCG
AGCGGCCGTTGGGAAACTACCGTGCTATGTGCGGAGGAGGGAGGGAAGGA
GGGCGGAAAGGAGGGCGGGAGGGAAGGGAAGTAATTCTGTGTGCTGTCAT
TCATAAGCCCAACAAATGATTCTTCTCATGTGCCATTCCTTTTTTTCCCT
CCCTCTCTCCCTCTCTCACTCTTCCTCTCTTCCTCCCTCTCCCTCTCCCT
TTCCCCCTTCCTACATATGTGCGGAACAGCCGCCTACCTTCTCACTGGCC
GGGCAGGGAGACCGCGTCTTGGGCAACCCCAAAGACGTGCTGAGGTAGGT
TCCTCCCTCCATCTCTCCATCCCTCCCACCCTTCTGTCATATTTTTCTCC
CTCCCTCCCTCTTTCCCTACTTTCATCTTCTTCCCCCGTGCTCCCCATCC
CCTCCCCCTTTACTCACCCGGCCTGTTCATTTTTTCTTTTTTTTTCTTCC
AAATAGTTTCGTCAACGAGCACCAACCGCACGGCAGCGACCCTCCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTT
CGCTTCCAGGTGCTCTCAAGACACGCCGGGAACAAGCACGACTATGACCA
CGCCTCCCTCCTCCTCCACAAAGACTGCGAGAAGGATCACTTCCCAGAGG
TGCTACATTGGATTCAAGTGCACGATGGAGGGAAATCATCCCAAGGACAG
AAGTCCAAATTATAGATGAATTCATCATAAATATATAAAGAAAGGCACAG
TGGGCAGGTTTGAATTTT
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protein sequence of NO30G01130.6

>NO30G01130.6-protein ID=NO30G01130.6-protein|Name=NO30G01130.6|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MLLLRRLGCSSSSSSSSSSSSSFLASPLSRRVLAMPLCRLSSSSSTTTTS
TTSPADAATAPALEMTSFFLPSRDGQHQLHVKRIRRAADPTAVSSSSPPP
SSSSASRPVCLLFHGALSDGRVFYSVKSQKGLGCFLAREGNCDVFVADFR
GRGMSSPPVAALHNHGQHELIVDDVRALSDGVRALLEEEGKEGGKQHWLA
HSWGGIITSSTLTRFPTYVSSVASQVWFGTKRVISTHSLERTMKIDMVWG
LAFPLLGKLYGYVPARKFKLGKERRREEGRGKRREL*
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mRNA from alignment at chr30:415053..417661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G01130.6 ID=NO30G01130.6|Name=NO30G01130.6|organism=Nannochloropsis oceanica|type=mRNA|length=2609bp|location=Sequence derived from alignment at chr30:415053..417661- (Nannochloropsis oceanica)
ACAGACGCCAAACATTGTCCCCAAGCTCCCTCTAGAGCCATGCTACTCCT
GAGAAGGCTCGGCTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCTTCCTCGCCTCTCCCCTCTCCCGTCGTGTCCTTGCCATGCCACTT
TGCCGCCTCTCCTCCTCCTCCAGCACCACTACAACCTCTACAACAAGCCC
CGCTGATGCCGCGACGGCACCCGCATTGGAGATGACCTCTTTTTTCCTTC
CCTCCCGCGACGGGCAGCATCAACTACACGTCAAGCGGGTATGTCCCCTT
CCCCCCTCTTTCCCTCTCTCCCCTCCTTTCTCCCTACATCTCAAAGTCCC
ATCCCCATAATACGATCAGATACGGAGGGCTGCCGACCCTACTGCCGTTT
CTTCATCAAGCCCACCACCTTCCTCCTCCTCGGCTTCCCGACCAGTTTGC
CTCCTCTTCCATGGGGCCCTCTCCGATGGCCGGGTTTTCTATTCCGTGAA
AAGCCAGAAGTACGTCCCTCCTTCCCACCCTCTCTCCCTCCCTCCCTGCC
TGCCTTCTCCTTGTCTTTTCTTCTTCTCTCTTTCTCTCTCTCGCTTCTTT
CCCAATGGAGGCTGCGCTTGTAGGAAGGGACGTACAGTCGAGCTTGTTCA
CTCCCTCCCTCCCTCCCTCCCACCCTCCCTCCATCGCTCTCAGAGGTCTG
GGTTGCTTCCTGGCACGCGAAGGGAATTGCGATGTTTTTGTGGCGGATTT
TCGAGGAAGGGGGATGAGCAGGTAGGAAGGAAGGGAGGGAGGGAGGGAGG
GAGGGAGGGGGGAGGGGAGGAAAAGCGTTTGCCTGGTAATGATTTGATGG
GAAGAATCCCCACCCTCCCTCTCTCCTTTCCATCTTCCCCCAACATCTAT
CTGGTTTATCCAGCCCGTCACTCCGAGGACCACGTCTAATTCCATGTACA
TTTTTCACGATTCCGTTACCCATGCGCTCACCTCCCCTCTCACCCTCCCT
CACTCCCTCCCTTCCTCAGTCCTCCCGTCGCAGCACTCCACAACCACGGG
CAGCACGAGCTGATTGTCGATGACGTCCGGGCCTTGAGTGATGGTGTCAG
GGCCCTGCTGGAGGAGGAAGGGAAGGAGGGAGGGAAGCAGCACTGGGTGA
GGAGATATGAAGGGAGGAGGAGTGGAGGGAGGGAAGGAGGAGGGGGCAGC
TAAATCTGATTTGTACTTACACACACATATATAAATATATACTTACAATT
ATGTTGATTTCACAGCTTGCTCATTCCTGGGGTGGCATAATAACTTCCTC
TACTTTGACGCGGTACGTGCTTCCCGTTTCCCTTCCTCCATTCCTGTTTT
TGTCCGATAGTTTAATTTCAAAATTTTGAATTTGATTTTCTTTTAAATGC
ATCGGCATTGACCCACGACAGGTTTCCAACCTATGTCTCCTCTGTCGCTT
CTCAAGTGTGGTTTGGCACGAAACGAGTCATCTCCACGCACAGCTTAGAG
AGGACAATGAAGATCGACATGGTCTGGGGCCTGGCATTTCCGTTACTTGG
GAAACTGTACGGTTACGTTCCCGCCCGGAAATTCAAATTGGGTAAGGAAA
GAAGGAGAGAGGAAGGGAGGGGAAAAAGGAGGGAATTATAGAGAGAATAA
CTCAAACGAGTTCCTCTCTCTCAACCATAACCTTCGATCCTCCCTCCCTT
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCCTCAGGAG
CAGACGATGAGCCCCTCCCGTTCCTCGAGGAGTGCTCTGTGTGGGTTCGA
GGGGGAGACTGGGTAGACGTTAAGGACGGTTTCGATCACCGAGCGGCCGT
TGGGAAACTACCGTGCTATGTGCGGAGGAGGGAGGGAAGGAGGGCGGAAA
GGAGGGCGGGAGGGAAGGGAAGTAATTCTGTGTGCTGTCATTCATAAGCC
CAACAAATGATTCTTCTCATGTGCCATTCCTTTTTTTCCCTCCCTCTCTC
CCTCTCTCACTCTTCCTCTCTTCCTCCCTCTCCCTCTCCCTTTCCCCCTT
CCTACATATGTGCGGAACAGCCGCCTACCTTCTCACTGGCCGGGCAGGGA
GACCGCGTCTTGGGCAACCCCAAAGACGTGCTGAGGTAGGTTCCTCCCTC
CATCTCTCCATCCCTCCCACCCTTCTGTCATATTTTTCTCCCTCCCTCCC
TCTTTCCCTACTTTCATCTTCTTCCCCCGTGCTCCCCATCCCCTCCCCCT
TTACTCACCCGGCCTGTTCATTTTTTCTTTTTTTTTCTTCCAAATAGTTT
CGTCAACGAGCACCAACCGCACGGCAGCGACCCTCCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTTCGCTTCCAG
GTGCTCTCAAGACACGCCGGGAACAAGCACGACTATGACCACGCCTCCCT
CCTCCTCCACAAAGACTGCGAGAAGGATCACTTCCCAGAGGTGCTACATT
GGATTCAAGTGCACGATGGAGGGAAATCATCCCAAGGACAGAAGTCCAAA
TTATAGATGAATTCATCATAAATATATAAAGAAAGGCACAGTGGGCAGGT
TTGAATTTT
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Coding sequence (CDS) from alignment at chr30:415053..417661-

>NO30G01130.6 ID=NO30G01130.6|Name=NO30G01130.6|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr30:415053..417661- (Nannochloropsis oceanica)
ATGCTACTCCTGAGAAGGCTCGGCTGTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCTTCCTCGCCTCTCCCCTCTCCCGTCGTGTCCTTG
CCATGCCACTTTGCCGCCTCTCCTCCTCCTCCAGCACCACTACAACCTCT
ACAACAAGCCCCGCTGATGCCGCGACGGCACCCGCATTGGAGATGACCTC
TTTTTTCCTTCCCTCCCGCGACGGGCAGCATCAACTACACGTCAAGCGGA
TACGGAGGGCTGCCGACCCTACTGCCGTTTCTTCATCAAGCCCACCACCT
TCCTCCTCCTCGGCTTCCCGACCAGTTTGCCTCCTCTTCCATGGGGCCCT
CTCCGATGGCCGGGTTTTCTATTCCGTGAAAAGCCAGAAAGGTCTGGGTT
GCTTCCTGGCACGCGAAGGGAATTGCGATGTTTTTGTGGCGGATTTTCGA
GGAAGGGGGATGAGCAGTCCTCCCGTCGCAGCACTCCACAACCACGGGCA
GCACGAGCTGATTGTCGATGACGTCCGGGCCTTGAGTGATGGTGTCAGGG
CCCTGCTGGAGGAGGAAGGGAAGGAGGGAGGGAAGCAGCACTGGCTTGCT
CATTCCTGGGGTGGCATAATAACTTCCTCTACTTTGACGCGGTTTCCAAC
CTATGTCTCCTCTGTCGCTTCTCAAGTGTGGTTTGGCACGAAACGAGTCA
TCTCCACGCACAGCTTAGAGAGGACAATGAAGATCGACATGGTCTGGGGC
CTGGCATTTCCGTTACTTGGGAAACTGTACGGTTACGTTCCCGCCCGGAA
ATTCAAATTGGGTAAGGAAAGAAGGAGAGAGGAAGGGAGGGGAAAAAGGA
GGGAATTATAG
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Synonyms
Publications