NO30G01100.1, NO30G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G01100.1
Unique NameNO30G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length797
Alignment locationchr30:405853..407266 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:405853..407266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G01100.1 vs.
Match: CBJ32339.1 (U6 snRNA-associated Sm-like protein LSm3 [Ectocarpus siliculosus])

HSP 1 Score: 160.2 bits (404), Expect = 3.100e-36
Identity = 76/92 (82.61%), Postives = 90/92 (97.83%), Query Frame = 0 
Query:    1 MSSSVDEPLDLIRLSLDERVYVKCRGERELRGKLHAFDRHLNMILGDVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRT 93
            MSSSV+EPLDLIRLSLDER++VKCRGERELRGKLH++D+HLNM+LGDVEETVTT E+DE+T EEI+RTS+R++EMLFVRGDVVILVSPP+RT
Sbjct:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
The following BLAST results are available for this feature:
BLAST of NO30G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ32339.13.100e-3682.61U6 snRNA-associated Sm-like protein LSm3 [Ectocarp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G01100NO30G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G01100.1NO30G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G01100.1.cds1NO30G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01100.1.cds2NO30G01100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01100.1.cds3NO30G01100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G01100.1 ID=NO30G01100.1|Name=NO30G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=797bp
CAGAAAGCGTGTCTGTGTGTGGCTTGTGATTGTGGGTGTAGGATGGAAAG
TTTAGAGGGGTGGCTTTTCTTGCTTCATCGTCTCCCGACCTCCCGTTACA
CTGCAATAATTCCTTTTTGCCTTCCCTGTACTTCACAGCGAGAGACCTCA
CGCACATGAATGAACCTCTTGCCTGTAGCTAATGTCGCTTTCACCACTCT
CCCCCTCACCACTTCCCCCCGTTTTTCACATAGCTGTGATCTGATCTAAC
CCGCCGGTTAGGGTTAGGGCTTTCTAATAATCCTCGCCACCATCATACAC
CACTTAAGCACCCCTCCCTCTCTCTCTCTCCCCCTCCCTCCCTTCCTCCC
CCCCCTGCCTCTCTCGGTACAGCCATGTCCTCTTCGGTCGATGAGCCTTT
GGACCTGATCCGTCTGTCCCTAGATGAAAGGGTTTATGTCAAGTGCCGCG
GGGAGAGGGAGCTGCGAGGAAAGCTGCATGCGTTTGACAGACATCTTAAT
ATGATACTGGGAGACGTGGAGGAGACAGTGACCACGCCGGAAATCGACGA
GGAAACCGACGAAGAAATAATCAGGACCTCGCGTAGGACTGTGGAGATGC
TATTTGTCCGGGGGGATGTCGTCATTCTGGTGTCTCCGCCCTTGCGCACT
GGTTGAAGATAAAAAAGAAAGAAAAAAGAAAAACATAGATAAGAGCGTGG
GAAAGAAGGAGAAGGAGCGAGGGGGGGAGGAAAGGAGGGAGGGAAGGCGA
CCGCATGATAAGTAAAACAAAGCAGAACACAGAAAGCAGAAAACGGA
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protein sequence of NO30G01100.1

>NO30G01100.1-protein ID=NO30G01100.1-protein|Name=NO30G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MSSSVDEPLDLIRLSLDERVYVKCRGERELRGKLHAFDRHLNMILGDVEE
TVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRTG*
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mRNA from alignment at chr30:405853..407266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G01100.1 ID=NO30G01100.1|Name=NO30G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp|location=Sequence derived from alignment at chr30:405853..407266+ (Nannochloropsis oceanica)
CAGAAAGCGTGTCTGTGTGTGGCTTGTGATTGTGGGTGTAGGATGGAAAG
TTTAGAGGGGTGGCTTTTCTTGCTTCATCGTCTCCCGACCTCCCGTTACA
CTGCAATAATTCCTTTTTGCCTTCCCTGTACTTCACAGCGAGAGACCTCA
CGCACATGAATGAACCTCTTGCCTGTAGCTAATGTCGCTTTCACCACTCT
CCCCCTCACCACTTCCCCCCGTTTTTCACATAGCTGTGATCTGATCTAAC
CCGCCGGTTAGGGTTAGGGCTTTCTAATAATCCTCGCCACCATCATACAC
CACTTAAGCACCCCTCCCTCTCTCTCTCTCCCCCTCCCTCCCTTCCTCCC
CCCCCTGCCTCTCTCGGTACAGCCATGTCCTCTTCGGTCGATGAGCCTTT
GGACCTGATCCGTCTGTCCCTAGATGAAAGGGTTTATGTCAAGTGCCGCG
GGGAGAGGGAGCTGCGAGGAAAGCTGCATGTAAGTGGGAGGGAGGGAAGA
AAGGAGGGAGAGATGGATGTAGGGTTGAATATGAAGGGCGATGAAGAGAT
CCATGTCCCTGTGTGGAGGGAGTGTAGAAGGTGTAGTGAGTAGGGCAACA
GGGGACCTCGCCTCTTTTTTTTCCGCTTACCACAGGGCCCTCGTGCTCAC
CGCTCTTTCTCCTTGCATCCATCCCTCTCTTCCTCCTCCCCCCCCTCTCT
TTTCTCCTTCCCCACAGGCGTTTGACAGACATCTTAATATGATACTGGGA
GACGTGGAGGAGACAGTGACCACGCCGGAAATCGACGAGGAAACCGACGA
AGAAATAATCAGGGTAAGTGTCCCTTTCCCTCCCCTCCTCCCTCCCTCCT
TCCCTCCCTTCCATCTATTCAACCCTGATTTTGGATGATAGAGGTGGAAG
AGTCCCAGGATAATGTCACCAGATATATAGATACCGACAATGACACAGAC
AAGGCGACTCTGACGGAGGGAGGGAGGGATGGAGGGAGAGAGGGAGGGAG
TGGTATGTACGACAAATATCGGGAGAGAGATCGTGACCATACGCGAAATC
ATGCCCATGAAACAAATTAGAAGATTTTGAGGATGCACTTTATTCTTTCC
CTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTTGGTTCATTCTCCCTT
TTCACCATCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGACCTCGCG
TAGGACTGTGGAGATGCTATTTGTCCGGGGGGATGTCGTCATTCTGGTGT
CTCCGCCCTTGCGCACTGGTTGAAGATAAAAAAGAAAGAAAAAAGAAAAA
CATAGATAAGAGCGTGGGAAAGAAGGAGAAGGAGCGAGGGGGGGAGGAAA
GGAGGGAGGGAAGGCGACCGCATGATAAGTAAAACAAAGCAGAACACAGA
AAGCAGAAAACGGA
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Coding sequence (CDS) from alignment at chr30:405853..407266+

>NO30G01100.1 ID=NO30G01100.1|Name=NO30G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at chr30:405853..407266+ (Nannochloropsis oceanica)
ATGTCCTCTTCGGTCGATGAGCCTTTGGACCTGATCCGTCTGTCCCTAGA
TGAAAGGGTTTATGTCAAGTGCCGCGGGGAGAGGGAGCTGCGAGGAAAGC
TGCATGCGTTTGACAGACATCTTAATATGATACTGGGAGACGTGGAGGAG
ACAGTGACCACGCCGGAAATCGACGAGGAAACCGACGAAGAAATAATCAG
GACCTCGCGTAGGACTGTGGAGATGCTATTTGTCCGGGGGGATGTCGTCA
TTCTGGTGTCTCCGCCCTTGCGCACTGGTTGA
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Synonyms
Publications