NO30G01080.1, NO30G01080.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G01080.1
Unique Name	NO30G01080.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2444
Alignment location	chr30:396566..400627 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:396566..400627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO30G01080.1 vs.
Match: OYV38040.1 (acetylglutamate kinase [Acidocella sp. 20-61-6])

HSP 1 Score: 304.7 bits (779), Expect = 3.800e-79
Identity = 160/282 (56.74%), Postives = 203/282 (71.99%), Query Frame = 0

Query:   84 ILAQAEPHIARLRGATVVVKYGGHAMENDVLKANFASDIALLKQLGINIVVVHGGGPQIAAMLKRLNVESSFIDGLRVTDKATLEVAEMVLCGLVNKEIASLIKKSGARAIGIAGRDDGLLVGIKVRE-------------ELGYVGEPTGVNTAIITDLLAAGITPVVAPIGVSEEGETLNFNADTAAGKIAGALKAKRLLLLTDVAGVLNKEKVLFPRLKLKQVEELKQDGTVTGGMIPKVEMAKSAVLEGVEGAVILDGRVPHAVLLQLLSDRAVGTLV 353
            I+A A P++ R  GAT+VVKYGGHAM  + L   F  DIALLKQ+GIN VVVHGGGPQI AML RL ++S+FIDGLRVTD A +EV EMVL G VNK++ASLI ++GA A+GI+G+D GL+   K+               +LG+VGEP  ++T +I  L  AG+ PV+AP+G  E+GET N NADTAAG IAGAL A+RLL+LTDV GVL+  K L P L L +++ L  DGT++GGMIPKVE    AV  GV GA ILDGRVPHA+LL+L ++  +GT++
Sbjct:   15 IVAHALPYLRRYAGATIVVKYGGHAMGEENLSLEFGRDIALLKQVGINPVVVHGGGPQINAMLTRLAIKSNFIDGLRVTDAAMVEVVEMVLAGSVNKQVASLINRAGALAVGISGKDGGLIRARKLHRTKKDPDSHIESVLDLGFVGEPAFIDTRVIHALTGAGLIPVIAPVGTGEDGETYNINADTAAGAIAGALNAQRLLMLTDVPGVLDANKTLMPDLSLPEIKALIADGTISGGMIPKVETCMEAVTLGVRGATILDGRVPHALLLELFTEGGIGTMI 296

The following BLAST results are available for this feature:

BLAST of NO30G01080.1 vs.

BLAST of NO30G01080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
OYV38040.1	3.800e-79	56.74	acetylglutamate kinase [Acidocella sp. 20-61-6]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G01080	NO30G01080	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G01080.1	NO30G01080.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G01080.1.cds1	NO30G01080.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01080.1.cds2	NO30G01080.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01080.1.cds3	NO30G01080.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01080.1.cds4	NO30G01080.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01080.1.cds5	NO30G01080.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01080.1.cds6	NO30G01080.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01080.1.cds7	NO30G01080.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01080.1.cds8	NO30G01080.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:396566..400627+
coding sequence from alignment at chr30:396566..400627+

mRNA sequence

>NO30G01080.1 ID=NO30G01080.1|Name=NO30G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2444bp
CTGTCTAACCGTAGTTCATGGTCCAAAAAGTTCTCTCCGGAAAGACCCTC
TTCAATAATATCCTTTACGTCTGATCCAGTTCAGGCACTTACCCGCCTTC
CGCCCCACTCTCTCTAAACAACTATAATTTCGTACATCATGCACTACCCC
GATCATGCACTATCCCGATCTCCACTGACCATGTCAGCCAGTACTCTTGC
ATGGTCACAGGAAAGGACGACCATGACGGCTTGTAGTCGTGCATGATGCC
TTTGACTACTATTTGACATCCACAACACGGATGTATTGCACTCATAAAGT
AAAAAACTATATACAAGTGAGTGAGAGGGGAGGTTTTTGAGGTTTGAGTG
GCGAGGAAAATCACCGTATTTCATGTGGTCAACACAATAAGAAGCAGACG
GGGGGACAGAGAACTAGCTATCTTCGATGTGATAGCTCAATGCATAGCAT
CAACAACGTTGGACAGGGAAAATAAAGGATGATATATTTATATGTAATAA
ATCGTATATTCTCGTCGTGATAAAGGACAGGTCTGCTTCAACTCACCCGC
ACTGGGAAAGAACGAACCCACCGCAACTTACTGCCGCTGGACTTTATTCT
TCAGCAGGCCCTGCTGGAAGAAAGGGTGTCTGATAGTGGACATCTGTGCG
TGTCCATGTGTTCAGGACGTGCTCATTTTAGACGACAAGATATTGTTATT
TATTATCTCTCCGCTACTTTTCCCACAACACAACCAAGAGGACGGCCTCG
GCCATCGCCATCACATAATGCAATGTCCTGCTTCCTCCTTCTACCTCTGC
ATTTTAGCCACCCTATTCCTCCTTGTGGTGGGCTGCATTGAAGCCTTCTC
CTTCCTTCCACCTAGCAGTAGCAGCGAGAGCGCTCGTGTGGTGACGACAG
GCCCGCTTACTGCCGCTACTGCGGTTGCTAGCTTTAAAGCGGCGCCTCGT
TTCCCCTCCCTCATCGTCCGGCAGGCGGCCAGTGCAGCGGGTGAAGTTGA
TCTAACCGATAAGGACATCCTTGCCCAAGCCGAGCCTCACATTGCGCGTT
TACGTGGTGCTACGGTAGTGGTAAAGTATGGGGGGCACGCCATGGAAAAC
GATGTGTTGAAGGCCAATTTCGCAAGTGACATTGCCTTGCTCAAGCAGTT
GGGAATCAATATTGTGGTGGTCCATGGAGGAGGACCGCAGATTGCGGCCA
TGCTCAAACGCCTAAATGTCGAGAGCTCCTTCATCGATGGCCTGCGCGTG
ACTGACAAGGCCACGCTGGAGGTTGCCGAAATGGTGTTATGCGGTTTGGT
CAACAAGGAAATCGCTTCGTTAATTAAGAAGAGCGGTGCCAGGGCCATCG
GAATTGCCGGAAGGGACGATGGATTGCTCGTGGGTATCAAGGTCAGGGAG
GAGCTGGGGTATGTGGGCGAGCCCACGGGCGTGAATACAGCGATTATTAC
CGACCTCCTCGCTGCGGGGATTACCCCAGTGGTGGCGCCCATCGGAGTTT
CGGAAGAAGGCGAGACGTTAAATTTTAATGCTGACACCGCCGCGGGAAAA
ATTGCCGGTGCTCTCAAGGCGAAGCGGCTTTTGTTACTCACGGACGTGGC
GGGGGTATTGAACAAGGAGAAGGTGCTCTTTCCCCGACTGAAGCTGAAGC
AGGTGGAGGAGCTGAAGCAGGACGGCACGGTCACAGGCGGGATGATTCCT
AAGGTGGAGATGGCCAAATCAGCCGTTCTTGAAGGCGTAGAAGGAGCGGT
CATTCTGGATGGGCGGGTTCCACACGCGGTATTACTGCAACTGCTCTCGG
ACAGAGCTGTGGGCACTTTGGTATCGGACGCAGAGGAGTAAAAAGGAAGG
GAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGCGAAACGAG
CGAGACTATCAAGGTTTTGGCCGTAGGGAGGGTAGGAGGGAGCGAGGAAG
GGAGGGAAAGCTGTGTGTAGGCAGTAAAAACGGAAACTGAGAGAAATGAA
AGAGGAAAAAGCGATGAAGAGTCAGAAAAGGATTTTCCCTACCGTTTACA
CAAGGAAATGAGGTAAAGACAGGAGAAAAAAGAAGCCAGATGGCAAGGAG
AGCCATGTTCGCCGTTCTTTTATTTCATGCTCCTCTCTCTACACACAATC
CTCATGAGATCTTGGACGTGCCGCATACATCACCTCTCTCTCTCCCCCCC
TTTCACTGATAACTACAAAATGAAGTGTGTGTGTGTGTGTGTGTGAGAGT
GAGTGTGGGTGTGTGTGTGTTACAAAAAGAGAAAGAAGAAGAAGAGAAAG
AAAAAGCGGAGGATGATTGTCGTGATCATCGTACCGATACAGAGGAGAGC
ATCCACACCCACACAGATATAACACAAACCCTCAACTAACGTCACATCGG
GTGGTCACACATTAAAGAAGAATAAGAGTCTTGACGCATGGACT

protein sequence of NO30G01080.1

>NO30G01080.1-protein ID=NO30G01080.1-protein|Name=NO30G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MQCPASSFYLCILATLFLLVVGCIEAFSFLPPSSSSESARVVTTGPLTAA
TAVASFKAAPRFPSLIVRQAASAAGEVDLTDKDILAQAEPHIARLRGATV
VVKYGGHAMENDVLKANFASDIALLKQLGINIVVVHGGGPQIAAMLKRLN
VESSFIDGLRVTDKATLEVAEMVLCGLVNKEIASLIKKSGARAIGIAGRD
DGLLVGIKVREELGYVGEPTGVNTAIITDLLAAGITPVVAPIGVSEEGET
LNFNADTAAGKIAGALKAKRLLLLTDVAGVLNKEKVLFPRLKLKQVEELK
QDGTVTGGMIPKVEMAKSAVLEGVEGAVILDGRVPHAVLLQLLSDRAVGT
LVSDAEE*

mRNA from alignment at chr30:396566..400627+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G01080.1 ID=NO30G01080.1|Name=NO30G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=4062bp|location=Sequence derived from alignment at chr30:396566..400627+ (Nannochloropsis oceanica)
CTGTCTAACCGTAGTTCATGGTCCAAAAAGTTCTCTCCGGAAAGACCCTC
TTCAATAATATCCTTTACGTCTGATCCAGTTCAGGCACTTACCCGCCTTC
CGCCCCACTCTCTCTAAACAACTATAATTTCGTACATCATGCACTACCCC
GATCATGCACTATCCCGATCTCCACTGACCATGTCAGCCAGTACTCTTGC
ATGGTCACAGGAAAGGACGACCATGACGGCTTGTAGTCGTGCATGATGCC
TTTGACTACTATTTGACATCCACAACACGGATGTATTGCACTCATAAAGT
AAAAAACTATATACAAGTGAGTGAGAGGGGAGGTTTTTGAGGTTTGAGTG
GCGAGGAAAATCACCGTATTTCATGTGGTCAACACAATAAGAAGCAGACG
GGGGGACAGAGAACTAGCTATCTTCGATGTGATAGCTCAATGCATAGCAT
CAACAACGTTGGACAGGGAAAATAAAGGATGATATATTTATATGTAATAA
ATCGTATATTCTCGTCGTGATAAAGGACAGGTCTGCTTCAACTCACCCGC
ACTGGGAAAGAACGAACCCACCGCAACTTACTGCCGCTGGACTTTATTCT
TCAGCAGGCCCTGCTGGAAGAAAGGGTGTCTGATAGTGGACATCTGTGCG
TGTCCATGTGTTCAGGACGTGCTCATTTTAGACGACAAGATATTGTTATT
TATTATCTCTCCGCTACTTTTCCCACAACACAACCAAGAGGACGGCCTCG
GCCATCGCCATCACATAATGCAATGTCCTGCTTCCTCCTTCTACCTCTGC
ATTTTAGCCACCCTATTCCTCCTTGTGGTGGGCTGCATTGAAGCCTTCTC
CTTCCTTCCACCTAGCAGTAGCAGCGAGAGCGCTCGTGTGGTGACGACAG
GCCCGCTTACTGCCGCTACTGCGGTTGCTAGCTTTAAAGCGGCGCCTCGT
TTCCCCTCCCTCATCGTCCGGCAGGCGGCCAGTGCAGCGGGTGAAGTTGA
TGTACGTTTATGGCTTGGATGGGGTAAATAAATGCATTTGCGATAAAATG
AAACTATCGAGGAAGGAAACGGTGTGTGCGCTGGATGATTCCAGGCTGCA
TCCCTGTGGTGCTGCACTCCCTCCTCTCACCCTATCCTCTCCCATCCTGC
CCTCCTTCCTTCCCTCCCTCAGCTAACCGATAAGGACATCCTTGCCCAAG
CCGAGCCTCACATTGCGCGTTTACGTGGTGCTACGGTAGTGGTAAAGTAT
GGGGGGCACGCCATGGAAAACGATGTGTTGAAGGCCAATTTCGCAAGTGA
CATTGCCTTGCTCAAGCAGGTAGGTCCTCCTTCCCTAACCCTAACCCTAT
CCCTCCCTCTATCCCTCCCTCTATCCCTCCCTCCCTCCCTCCCTTCTTCC
CTCCCTCCTTCCCTCCCTTCTTTCCTCCTTTCCTCCCTCCCTCCTTTCCG
CCCTCCCTATCTTGTCTGCCCTTTTCCTTGCCTACCATTCTTTATGGGGA
CGTTATTACAGCCATTACAGTCATTACAGTCATTACAGTCATTACGGTCA
TTACAGTCTTTACAGTCATTACAGTCATTACGGTCATCCTCAGCACACCG
AGATCTGAGCATGCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCTCTCCTTCCCTCCTTCCATTCCCCACAGTTGGGAATCAATATTGTGGT
GGTCCATGGAGGAGGACCGCAGATTGCGGCCATGCTCAAACGCCTAAATG
TCGAGAGCTCCTTCATCGATGGCCTGCGCGTGACTGACAAGGTAGGGAGG
GAAGGAGGGAGGGAGGGAGGAGAGGAAGGAAGGGACAGAGGAAGGAAACT
CCACATCATACGCTTTCGAGCGACTCGTCGTCCATTCCGTCACACATGGC
GCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTAGGCCACGCTGGAGGTTGCCGAAATGGTGTTATGC
GGTTTGGTCAACAAGGAAATCGCTTCGTTAATTAAGAAGAGCGGTGCCAG
GGCCATCGGAATTGCCGGAAGGGACGATGGATTGCTCGTGGGTATCAAGG
TGAGGGAGAGAGGAAAGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAAAGAGAAAAAAAGGTTGGTTGGTTGGCCTGTCAGGTG
GCGCCAAGGTCGAGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGCGGGATGCATGAGAGACTCTCGCGATCTTCACCGTCATTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTTCACAC
CCTCCCTCCCTCCCTTCCTTTCTTCAGGTCAGGGAGGAGCTGGGGTATGT
GGGCGAGCCCACGGGCGTGAATACAGCGATTATTACCGACCTCCTCGCTG
CGGGGATTACCCCAGTGGTGGCGCCCATCGGAGTTTCGGAAGAAGGCGAG
ACGTTAAATTTTAATGCTGACACCGCCGCGGGAAAAATTGCCGGTGCTCT
CAAGGCGAAGCGGCTTTTGTTACTCACGGACGTGGCGGGGGTATTGAACA
AGGAGAAGGTGCTCTTTCCCCGACTGAAGCTGAAGCAGGTCTGGAGGGAG
GGAGGGAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AACGAGGGAGGCAGGAAGAGAAAGTCACTTCGACCATTTCCTATTTCTTC
TTTTTCCTTCTTATTTTTTGTATCTCTCTCGGTGTGTGTGTGTGAAAACA
AACAAACAGGTGGAGGAGCTGAAGCAGGACGGCACGGTCACAGGCGGGAT
GATTCCTAAGGTAGGACAAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGGGGGAAGGAAGCGAGGATGAGGGTGGGTATTTATCTAATATT
CTGCAATATTATGTACGTATATATATATATATATATACACACATATTCTC
TTTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTTTCTTTCTTTC
TCTCTCTCCCCACCCGCCGCTTCTTGTCGCACACTTGCCAAACCTTTTTT
TTTTATTTTTTTAAAATTGTTTTGACGCCGACGTCACCCTCATCCTCCCC
TCCCTCTTTCATTCCCTTCCCTTTCCCCCACACTCCGTCAGGTGGAGATG
GCCAAATCAGCCGTTCTTGAAGGCGTAGAAGGAGCGGTCATTCTGGATGG
GCGGGTTCCACACGCGGTATTACTGCAACTGCTCTCGGACAGGTAGGGGG
AGAGGGAGGAGGGGAAGGAGGAAAGGAGGGAAGAGGGAGGGAAGGATCAA
ACGTATCATGTCAATAACCAATACTTCCCCCTCGTATCACTCATTTTCTC
ATTTTTCCTTTCCCTTCAATAGAGCTGTGGGCACTTTGGTATCGGACGCA
GAGGAGTAAAAAGGAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGG
GAGGGAGGGCGAAACGAGCGAGACTATCAAGGTTTTGGCCGTAGGGAGGG
TAGGAGGGAGCGAGGAAGGGAGGGAAAGCTGTGTGTAGGCAGTAAAAACG
GAAACTGAGAGAAATGAAAGAGGAAAAAGCGATGAAGAGTCAGAAAAGGA
TTTTCCCTACCGTTTACACAAGGAAATGAGGTAAAGACAGGAGAAAAAAG
AAGCCAGATGGCAAGGAGAGCCATGTTCGCCGTTCTTTTATTTCATGCTC
CTCTCTCTACACACAATCCTCATGAGATCTTGGACGTGCCGCATACATCA
CCTCTCTCTCTCCCCCCCTTTCACTGATAACTACAAAATGAAGTGTGTGT
GTGTGTGTGTGTGAGAGTGAGTGTGGGTGTGTGTGTGTTACAAAAAGAGA
AAGAAGAAGAAGAGAAAGAAAAAGCGGAGGATGATTGTCGTGATCATCGT
ACCGATACAGAGGAGAGCATCCACACCCACACAGATATAACACAAACCCT
CAACTAACGTCACATCGGGTGGTCACACATTAAAGAAGAATAAGAGTCTT
GACGCATGGACT

Coding sequence (CDS) from alignment at chr30:396566..400627+

>NO30G01080.1 ID=NO30G01080.1|Name=NO30G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr30:396566..400627+ (Nannochloropsis oceanica)
ATGCAATGTCCTGCTTCCTCCTTCTACCTCTGCATTTTAGCCACCCTATT
CCTCCTTGTGGTGGGCTGCATTGAAGCCTTCTCCTTCCTTCCACCTAGCA
GTAGCAGCGAGAGCGCTCGTGTGGTGACGACAGGCCCGCTTACTGCCGCT
ACTGCGGTTGCTAGCTTTAAAGCGGCGCCTCGTTTCCCCTCCCTCATCGT
CCGGCAGGCGGCCAGTGCAGCGGGTGAAGTTGATCTAACCGATAAGGACA
TCCTTGCCCAAGCCGAGCCTCACATTGCGCGTTTACGTGGTGCTACGGTA
GTGGTAAAGTATGGGGGGCACGCCATGGAAAACGATGTGTTGAAGGCCAA
TTTCGCAAGTGACATTGCCTTGCTCAAGCAGTTGGGAATCAATATTGTGG
TGGTCCATGGAGGAGGACCGCAGATTGCGGCCATGCTCAAACGCCTAAAT
GTCGAGAGCTCCTTCATCGATGGCCTGCGCGTGACTGACAAGGCCACGCT
GGAGGTTGCCGAAATGGTGTTATGCGGTTTGGTCAACAAGGAAATCGCTT
CGTTAATTAAGAAGAGCGGTGCCAGGGCCATCGGAATTGCCGGAAGGGAC
GATGGATTGCTCGTGGGTATCAAGGTCAGGGAGGAGCTGGGGTATGTGGG
CGAGCCCACGGGCGTGAATACAGCGATTATTACCGACCTCCTCGCTGCGG
GGATTACCCCAGTGGTGGCGCCCATCGGAGTTTCGGAAGAAGGCGAGACG
TTAAATTTTAATGCTGACACCGCCGCGGGAAAAATTGCCGGTGCTCTCAA
GGCGAAGCGGCTTTTGTTACTCACGGACGTGGCGGGGGTATTGAACAAGG
AGAAGGTGCTCTTTCCCCGACTGAAGCTGAAGCAGGTGGAGGAGCTGAAG
CAGGACGGCACGGTCACAGGCGGGATGATTCCTAAGGTGGAGATGGCCAA
ATCAGCCGTTCTTGAAGGCGTAGAAGGAGCGGTCATTCTGGATGGGCGGG
TTCCACACGCGGTATTACTGCAACTGCTCTCGGACAGAGCTGTGGGCACT
TTGGTATCGGACGCAGAGGAGTAA

Synonyms

Publications