NO30G01040.1, NO30G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G01040.1
Unique NameNO30G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length841
Alignment locationchr30:385310..386286 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:385310..386286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G01040.1 vs.
Match: EWM20700.1 (ferritin [Nannochloropsis gaditana])

HSP 1 Score: 331.3 bits (848), Expect = 2.500e-87
Identity = 165/236 (69.92%), Postives = 192/236 (81.36%), Query Frame = 0 
Query:    1 MWRGSATAISRRLFKLLNDQGNRELENMLAYTASSHWFDHNELPGSASWCKTHAEEERGHAMKILDHLSLRRIEEAVTGSAGEEGDV-------GSASSSSGEAEAGEAAKRKPSVRQLKTEADPQASTAFTWEENPNIVLDVKGPFMTTFSDPAAIWRSALEQERENSRRFFHIMAAARETQDYVTENFLLNYFIPEQLNEEKAVEEIFSNTLLVMKRGPEYYFELDRELPSKPH 230
            MWRGS+TAISRR+FKLLNDQGNRE EN L YTA SHWFD+NELPGSASWCKT A+EERGHA+KIL+HLS RRIE+ VTGS  E  +        G+ S+     E+ EA++R+P + +L++EA PQ S  F WE+ PNIVLDVKGPF TTFSDP AIWR ALEQER NSR+ F IMAAARETQDYVTE+ L++Y+IPEQL EEKAVEE+ SNTLLVMKRGPE+Y+ELDR LPSKPH
Sbjct:  139 MWRGSSTAISRRIFKLLNDQGNREFENSLTYTAFSHWFDYNELPGSASWCKTQAQEERGHALKILEHLSSRRIEDDVTGSEWETQEAERLQNVRGTNSNGDVPTESSEASEREPDLGKLRSEAAPQKSKTFHWEQVPNIVLDVKGPFTTTFSDPIAIWRKALEQERYNSRKIFQIMAAARETQDYVTESLLMSYYIPEQLGEEKAVEEVLSNTLLVMKRGPEFYYELDRSLPSKPH 374
The following BLAST results are available for this feature:
BLAST of NO30G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20700.12.500e-8769.92ferritin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G01040NO30G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G01040.1NO30G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G01040.1.cds1NO30G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01040.1.cds2NO30G01040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G01040.1 ID=NO30G01040.1|Name=NO30G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
AGAACCCCACCCTTATCGAGCATTATGTGGCGCGGCTCTGCCACCGCTAT
AAGCCGCCGGCTCTTCAAGCTTTTGAATGACCAAGGCAACCGCGAACTTG
AGAATATGCTGGCCTACACTGCATCCTCGCATTGGTTCGACCACAACGAG
CTTCCCGGGAGTGCGAGCTGGTGCAAGACTCACGCAGAGGAAGAACGGGG
CCATGCCATGAAGATTCTTGATCATTTATCTTTACGCCGTATCGAAGAGG
CCGTGACAGGCTCGGCGGGGGAAGAAGGCGACGTTGGAAGCGCCAGCAGC
AGCAGCGGCGAGGCAGAGGCAGGAGAGGCTGCCAAACGCAAGCCGAGCGT
GCGCCAGCTCAAGACCGAGGCCGACCCTCAAGCCAGCACGGCATTCACCT
GGGAAGAGAACCCCAATATTGTTTTGGATGTCAAGGGGCCTTTCATGACG
ACCTTTTCCGATCCTGCTGCCATCTGGCGTTCGGCTCTGGAGCAGGAACG
GGAAAATTCGAGACGCTTTTTCCACATCATGGCGGCGGCGCGCGAGACTC
AAGATTATGTGACGGAGAATTTCCTGCTCAATTACTTCATTCCGGAACAG
CTGAATGAGGAGAAGGCGGTGGAGGAGATTTTTTCCAATACATTGTTGGT
CATGAAGCGGGGCCCTGAGTATTATTTTGAATTGGATCGCGAGTTACCCT
CGAAGCCGCACTAAGTAAGCTTGGCTTGACACAAGGAAGGGAATCATATA
GAGCTGGAGGATGCAGGTTCGGGACAAAGAAAAGTGGACCAGAGACATCA
ACAAGTACAGCAGGACAGAAATACAAGAAACTTTTCCCACA
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protein sequence of NO30G01040.1

>NO30G01040.1-protein ID=NO30G01040.1-protein|Name=NO30G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MWRGSATAISRRLFKLLNDQGNRELENMLAYTASSHWFDHNELPGSASWC
KTHAEEERGHAMKILDHLSLRRIEEAVTGSAGEEGDVGSASSSSGEAEAG
EAAKRKPSVRQLKTEADPQASTAFTWEENPNIVLDVKGPFMTTFSDPAAI
WRSALEQERENSRRFFHIMAAARETQDYVTENFLLNYFIPEQLNEEKAVE
EIFSNTLLVMKRGPEYYFELDRELPSKPH*
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mRNA from alignment at chr30:385310..386286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G01040.1 ID=NO30G01040.1|Name=NO30G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=977bp|location=Sequence derived from alignment at chr30:385310..386286- (Nannochloropsis oceanica)
AGAACCCCACCCTTATCGAGCATTATGTGGCGCGGCTCTGCCACCGCTAT
AAGCCGCCGGCTCTTCAAGCTTTTGAATGACCAAGGCAACCGCGAACTTG
AGAATATGCTGGCCTACACTGCATCCTCGCATTGGTTCGACCACAACGAG
CTTCCCGGGAGTGCGAGCTGGTGCAAGACTCACGCAGAGGAAGAACGGGG
CCATGCCATGAAGATTCTTGATCATTTATCTTTACGCCGTATCGAAGAGG
CCGTGACAGGCTCGGCGGGGGAAGAAGGCGACGTTGGAAGCGCCAGCAGC
AGCAGCGGCGAGGCAGAGGCAGGAGAGGCTGCCAAACGCAAGCCGAGCGT
GCGCCAGCTCAAGACCGAGGCCGACCCTCAAGCCAGCACGGCATTCACCT
GGGAAGAGAACCCCAATATTGTTTTGGATGTCAAGGGGCCTTTCATGACG
ACCTTTTCCGATCCTGCTGCCATCTGGCGTTCGGCTCTGGAGCAGGAACG
GGAAAATTCGAGACGCTTTTTCCACATCATGGCGGCGGCGCGCGAGACTC
AAGATTATGTGACGGAGAATTTCCTGCTCAATTACTTCATTCCGGAACAG
CTGAATGAGGAGAAGGCGGTGGAGGAGATTTTTTCCAATACAGTAAGAGG
GAGGTGGTAGCGGGCTGGTTGGACGGTAGGGAGAAATGCAATATGTAGAA
CAGTGATTAAGGGGTTTAACATGTGAACAATATTATCCCAGTCTCTCAAC
TTTATTATTTTTCTACTACCACGCACAGTTGTTGGTCATGAAGCGGGGCC
CTGAGTATTATTTTGAATTGGATCGCGAGTTACCCTCGAAGCCGCACTAA
GTAAGCTTGGCTTGACACAAGGAAGGGAATCATATAGAGCTGGAGGATGC
AGGTTCGGGACAAAGAAAAGTGGACCAGAGACATCAACAAGTACAGCAGG
ACAGAAATACAAGAAACTTTTCCCACA
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Coding sequence (CDS) from alignment at chr30:385310..386286-

>NO30G01040.1 ID=NO30G01040.1|Name=NO30G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr30:385310..386286- (Nannochloropsis oceanica)
ATGTGGCGCGGCTCTGCCACCGCTATAAGCCGCCGGCTCTTCAAGCTTTT
GAATGACCAAGGCAACCGCGAACTTGAGAATATGCTGGCCTACACTGCAT
CCTCGCATTGGTTCGACCACAACGAGCTTCCCGGGAGTGCGAGCTGGTGC
AAGACTCACGCAGAGGAAGAACGGGGCCATGCCATGAAGATTCTTGATCA
TTTATCTTTACGCCGTATCGAAGAGGCCGTGACAGGCTCGGCGGGGGAAG
AAGGCGACGTTGGAAGCGCCAGCAGCAGCAGCGGCGAGGCAGAGGCAGGA
GAGGCTGCCAAACGCAAGCCGAGCGTGCGCCAGCTCAAGACCGAGGCCGA
CCCTCAAGCCAGCACGGCATTCACCTGGGAAGAGAACCCCAATATTGTTT
TGGATGTCAAGGGGCCTTTCATGACGACCTTTTCCGATCCTGCTGCCATC
TGGCGTTCGGCTCTGGAGCAGGAACGGGAAAATTCGAGACGCTTTTTCCA
CATCATGGCGGCGGCGCGCGAGACTCAAGATTATGTGACGGAGAATTTCC
TGCTCAATTACTTCATTCCGGAACAGCTGAATGAGGAGAAGGCGGTGGAG
GAGATTTTTTCCAATACATTGTTGGTCATGAAGCGGGGCCCTGAGTATTA
TTTTGAATTGGATCGCGAGTTACCCTCGAAGCCGCACTAA
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Synonyms
Publications