NO30G00920.1, NO30G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00920.1
Unique NameNO30G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2401
Alignment locationchr30:339466..342510 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:339466..342510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00920NO30G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00920.1NO30G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00920.1.cds1NO30G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00920.1.cds2NO30G00920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00920.1.cds3NO30G00920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00920.1.cds4NO30G00920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00920.1 ID=NO30G00920.1|Name=NO30G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
TGAGAGCATTGCTCTCAACCGGAACGCTCATTAATATTATTGATGGCATC
ATTCCTTTACCTTTTTCTTTTTCTCTCCCCTTCTGCCTCGTCTAAAGCAT
TTTGTGTACTTGGTCGACCAGGCTGCCACACTAGACACGGGTCGTCCTTT
TATCCGAGTCCAGTCCCTGGGTCTGCCGAAGACGGGCCCAGTGCCCACCC
TGACGGTTGTTAACCGAAGTGAGCTCAGCTAAAACTGCTTCTACTTGACC
TGTGCCATCAGGCATCTCTAGCAACGTTTCTTGTAAAAAAACTTACGCGT
AGTTCATTTGCGCTTTCATTGCCAACCCCAATCCACTGAATACTTCATAA
AGCGTCGAGTGAATTCAAGGCCACACTCCAATCAAAGGCCTTGACAATTT
GTCATCGCAAAGATGGAGAATGCGGACATGGGCGCGAAGACGAGCAACAT
GAAGCAGGCGGTAACGATGCCGGAGCCACTGGCTCTCAGAGCTGAACACT
TTTACCTGGCCACTCGGTTGGGCCCCTCATCGAGTGCCAGAGTCTAGTCA
TCCTCTAACTGTACACATGCATAATCTATCCCATTTCTCCCTGCATTGCC
TTAGACCCACAGAAATCGTCCCCCGATACTCCTCGGAGATATTAAAACCC
TCCAAACAACGTGGGCGCTGCGAATGTATGGAGCCTCATGGCCACATCTC
CGTCTCCTTGCTGCACCCTCCTGCTCCACATCCTCAAGAGCTCCCACTTA
AGGATAGCCTGCCCCCTAGCCCAACATTTGCTCCATTAACTCTATCGTCG
ATCCCTGTTGAATCTATCTGTCTTTCTCCTCCAACGAGCAGCGTGCCCAC
CACCCGCAGCAGCCAGAATCTTGGCACGCCAGTCCCTACAAATATCAGAT
ACAGAAGCCATCCTCAACGAGCCTTGGCATGCTTGTATTGCCGGAGATCC
AAAGTAAAGTGCGACAAGAAACAGCCGAGTTGTACACGATGCGTCCGCCT
GGGCGTAATCTGTGAGCCGCAAAAACGAGGGCAAACGACGGCACCTTTTA
AATCCTTGGCATCAGCAATCGCCAACTTCCCGCAATCCTCATTTCCCTAT
CACAAGCCCTCTTTGCTCGGCTCGCTGCACTCTGATCCGCCCTCCCAAGC
CCGCTTAACCTTCAATCAGGCCCTGCGTGGGCATCAGCACCCGCAGAGCC
ACTCGCAGAGCCCAGAGCCCAGAGTATTTACCGCACACGCCAAGCCAGCC
CGGTATCCGTGGCACGAGGCAGCAACTGATCCATGTCGTCAGCAGCTACT
GCGATACAACCAACTATCTTTGCCATTAGATGTACCGCAAACTCTCTCTT
CCTCTTCCTCTTCCTCCTTGCCCTCGTTCTCGTCGTCGTCCTCCTCCTCG
TCCTCCTTGTCCTCCTCCTCCTCCTTCCCCTCGTCCTCGTTTCCTTCTTC
CTCCTCCTCCTCCTTGTCCTCCTCTTCTTCCTCGTCGTCCTCCTTTTCCT
CTTTCTCCACCCCGAGTGCTCCTGTCCACAACCGTCTGGTTACGGACAGC
TTCTTAGTCCCCCCCCGCCACCCTCAAGCGCATATCAGCAACATCAGCTG
CAGCAGCTGCTACTCGCCTTCCATCATCTCAAGCAGCACCAGCAGCAGCA
GCATCAAAAGGTTCTGGAAGCGCTGGCCGCCATGCATAATGGTACACCCC
TTTCCCCCCTCCTTCTTCGTCCTCATGGACAAGAGCAACGACCGCAACCA
AGACCGCAACCGCAACCGCAACTCCGGTCTCAGGCACTGAATGCGCTTGG
CTCTACTACAATCGTTCCTCACCCTTCGTTCTCCTCCACCTCTTCCTCCT
CCACGGCAACATCCACTGCGTTGCTGCCTTTCCAGAACGCCTCCACATGC
ACAGACCCAAACACAAAGACGACCATCAGCAGCAGCAGCAGCAGCAGCAA
GAGCAGCAGCAACAGGAGGACCAGCCCGTGCTTGCATGCTCTCTCCTTCA
ACCTTCCTCCATCCCTCCCTTTTCCTCCTCTACCTCCTTTACTCCACCTC
TCTCACCACCCGGCAGGGTACGTCTCAGACCAGGCGACCCTCACGACGAC
GTAAATACATCCTTTGCATCTTACGGGCGTTGTGTGATAGGTAAAATAAG
GGGTAGGTTACATCGTGGAGGACTGTTATTTCGAAGGTTTTGAGAAGGAG
GGGGGCTGACGTGTCTACTGCTTCGACCCCACCCCATGGAGGATACCTTA
TAGTTGCTTCGACTGAATGGTCTACCCCAACTTTGATATACACGGGGATG
AATCCTACATTTTTATTAACTGGTCACATAATTTTTAATGACTCAAAAAA
GTAAAAGTATTGTGGGGGACTCTGCTTAAAGAGGGGGGGAGGAAGGAAGG
A
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protein sequence of NO30G00920.1

>NO30G00920.1-protein ID=NO30G00920.1-protein|Name=NO30G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MHNLSHFSLHCLRPTEIVPRYSSEILKPSKQRGRCECMEPHGHISVSLLH
PPAPHPQELPLKDSLPPSPTFAPLTLSSIPVESICLSPPTSSVPTTRSSQ
NLGTPVPTNIRYRSHPQRALACLYCRRSKVKCDKKQPSCTRCVRLGVICE
PQKRGQTTAPFKSLASAIANFPQSSFPYHKPSLLGSLHSDPPSQARLTFN
QALRGHQHPQSHSQSPEPRVFTAHAKPARYPWHEAATDPCRQQLLRYNQL
SLPLDVPQTLSSSSSSSLPSFSSSSSSSSSLSSSSSFPSSSFPSSSSSSL
SSSSSSSSSFSSFSTPSAPVHNRLVTDSFLVPPRHPQAHISNISCSSCYS
PSIISSSTSSSSIKRFWKRWPPCIMVHPFPPSFFVLMDKSNDRNQDRNRN
RNSGLRH*
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mRNA from alignment at chr30:339466..342510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00920.1 ID=NO30G00920.1|Name=NO30G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3045bp|location=Sequence derived from alignment at chr30:339466..342510+ (Nannochloropsis oceanica)
TGAGAGCATTGCTCTCAACCGGAACGCTCATTAATATTATTGATGGCATC
ATTCCTTTACCTTTTTCTTTTTCTCTCCCCTTCTGCCTCGTCTAAAGCAT
TTTGTGTACTTGGTCGACCAGGCTGCCACACTAGACACGGGTCGTCCTTT
TATCCGAGTCCAGTCCCTGGGTCTGCCGAAGACGGGCCCAGTGCCCACCC
TGACGGTTGTTAACCGAAGTGAGCTCAGCTAAAACTGCTTCTACTTGACC
TGTGCCATCAGGCATCTCTAGCAACGTTTCTTGTAAAAAAACTTACGCGT
AGTTCATTTGCGCTTTCATTGCCAACCCCAATCCACTGAATACTTCATAA
AGCGTCGAGTGAATTCAAGGCCACACTCCAATCAAAGGCCTTGACAATTT
GTCATCGCAAAGATGGAGAATGCGGACATGGGCGCGAAGACGAGCAACAT
GAAGCAGGCGGTAACGATGCCGGAGCCACTGGCTCTCAGAGCTGAACACT
TTTACCTGGCCACTCGGTTGGGCCCCTCATCGAGTGCCAGAGTCTAGTCA
TCCTCTAACTGTACACATGCATAATCTATCCCATTTCTCCCTGCATTGCC
TTAGACCCACAGAAATCGTCCCCCGATACTCCTCGGAGATATTAAAACCC
TCCAAACAACGTGGGCGCTGCGAATGTATGGAGCCTCATGGCCACATCTC
CGTCTCCTTGCTGCACCCTCCTGCTCCACATCCTCAAGAGCTCCCACTTA
AGGATAGCCTGCCCCCTAGCCCAACATTTGCTCCATTAACTCTATCGTCG
ATCCCTGTTGAATCTATCTGTCTTTCTCCTCCAACGAGCAGCGTGCCCAC
CACCCGCAGCAGCCAGAATCTTGGCACGCCAGTCCCTACAAATATCAGAT
ACAGAAGCCATCCTCAACGAGCCTTGGCATGCTTGTATTGCCGGAGATCC
AAAGTAAAGTGCGACAAGAAACAGCCGAGTTGTACACGGTAAGTACCCAC
CACTTGAGGCTCACGGCTGGTCCTCGAGTCATCTGTCAGTGTGCGAGACC
GCGGTTTCGTATGCCACAGACCTCAATTAAATATCTCGTCTTATACCCTC
AACATACGACAGATGCGTCCGCCTGGGCGTAATCTGTGAGCCGCAAAAAC
GAGGGCAAACGACGGCACCTTTTAAATCCTTGGCATCAGCAATCGCCAAC
TTCCCGCAATCCTCATTTCCCTATCACAAGCCCTCTTTGCTCGGCTCGCT
GCACTCTGATCCGCCCTCCCAAGCCCGCTTAACCTTCAATCAGGCCCTGC
GTGGGCATCAGCACCCGCAGAGCCACTCGCAGAGCCCAGAGCCCAGAGTA
TTTACCGGTGAGTACCCCACCTCACCCCCCTGTCCCTTGCTAAGCCCGCT
CGCCGCATATGATTAGCGTCGTGCCCACTTCGCTGATAAGTGAAGAGCTG
AGTGTATCTGTTAAAGTAGGGCTTTTGACAACCCCCTTGAGGCGCGGGCT
CTGATTCATTTCCTGTCCTCACGTCATTAAGGCCAGTTTGATGTCCCTGT
GTGGATTACATGGATCCATACACAGACCTGCAGGACATGCCTCGGCCCTT
GCGTGTGTCTTTATGACCTTGCCAGACGACATTCTCGGCGCGGGCCTCGG
ATACGGCGATTTCTCAAATGGTGCTTTCCTTTCTCCGCCCCCACACCCCA
CACAGCACACGCCAAGCCAGCCCGGTATCCGTGGCACGAGGCAGCAACTG
ATCCATGTCGTCAGCAGCTACTGCGGTAAGCCACAGAAACGCTGCCTTAA
CGCGGCCTTAAAGGGAGAGGGAGAGCTAGCGGCCTGGTCCATATAGCATG
GGTGTGGATTTGAGGCTTTTCGTGCATGTCACCCATCATCAACCTTTCTA
CTCACTCTTCACACACATGCACACACACATATACACACGCTATGCAGATA
CAACCAACTATCTTTGCCATTAGATGTACCGCAAACTCTCTCTTCCTCTT
CCTCTTCCTCCTTGCCCTCGTTCTCGTCGTCGTCCTCCTCCTCGTCCTCC
TTGTCCTCCTCCTCCTCCTTCCCCTCGTCCTCGTTTCCTTCTTCCTCCTC
CTCCTCCTTGTCCTCCTCTTCTTCCTCGTCGTCCTCCTTTTCCTCTTTCT
CCACCCCGAGTGCTCCTGTCCACAACCGTCTGGTTACGGACAGCTTCTTA
GTCCCCCCCCGCCACCCTCAAGCGCATATCAGCAACATCAGCTGCAGCAG
CTGCTACTCGCCTTCCATCATCTCAAGCAGCACCAGCAGCAGCAGCATCA
AAAGGTTCTGGAAGCGCTGGCCGCCATGCATAATGGTACACCCCTTTCCC
CCCTCCTTCTTCGTCCTCATGGACAAGAGCAACGACCGCAACCAAGACCG
CAACCGCAACCGCAACTCCGGTCTCAGGCACTGAATGCGCTTGGCTCTAC
TACAATCGTTCCTCACCCTTCGTTCTCCTCCACCTCTTCCTCCTCCACGG
CAACATCCACTGCGTTGCTGCCTTTCCAGAACGCCTCCACATGCACAGAC
CCAAACACAAAGACGACCATCAGCAGCAGCAGCAGCAGCAGCAAGAGCAG
CAGCAACAGGAGGACCAGCCCGTGCTTGCATGCTCTCTCCTTCAACCTTC
CTCCATCCCTCCCTTTTCCTCCTCTACCTCCTTTACTCCACCTCTCTCAC
CACCCGGCAGGGTACGTCTCAGACCAGGCGACCCTCACGACGACGTAAAT
ACATCCTTTGCATCTTACGGGCGTTGTGTGATAGGTAAAATAAGGGGTAG
GTTACATCGTGGAGGACTGTTATTTCGAAGGTTTTGAGAAGGAGGGGGGC
TGACGTGTCTACTGCTTCGACCCCACCCCATGGAGGATACCTTATAGTTG
CTTCGACTGAATGGTCTACCCCAACTTTGATATACACGGGGATGAATCCT
ACATTTTTATTAACTGGTCACATAATTTTTAATGACTCAAAAAAGTAAAA
GTATTGTGGGGGACTCTGCTTAAAGAGGGGGGGAGGAAGGAAGGA
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Coding sequence (CDS) from alignment at chr30:339466..342510+

>NO30G00920.1 ID=NO30G00920.1|Name=NO30G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr30:339466..342510+ (Nannochloropsis oceanica)
ATGCATAATCTATCCCATTTCTCCCTGCATTGCCTTAGACCCACAGAAAT
CGTCCCCCGATACTCCTCGGAGATATTAAAACCCTCCAAACAACGTGGGC
GCTGCGAATGTATGGAGCCTCATGGCCACATCTCCGTCTCCTTGCTGCAC
CCTCCTGCTCCACATCCTCAAGAGCTCCCACTTAAGGATAGCCTGCCCCC
TAGCCCAACATTTGCTCCATTAACTCTATCGTCGATCCCTGTTGAATCTA
TCTGTCTTTCTCCTCCAACGAGCAGCGTGCCCACCACCCGCAGCAGCCAG
AATCTTGGCACGCCAGTCCCTACAAATATCAGATACAGAAGCCATCCTCA
ACGAGCCTTGGCATGCTTGTATTGCCGGAGATCCAAAGTAAAGTGCGACA
AGAAACAGCCGAGTTGTACACGATGCGTCCGCCTGGGCGTAATCTGTGAG
CCGCAAAAACGAGGGCAAACGACGGCACCTTTTAAATCCTTGGCATCAGC
AATCGCCAACTTCCCGCAATCCTCATTTCCCTATCACAAGCCCTCTTTGC
TCGGCTCGCTGCACTCTGATCCGCCCTCCCAAGCCCGCTTAACCTTCAAT
CAGGCCCTGCGTGGGCATCAGCACCCGCAGAGCCACTCGCAGAGCCCAGA
GCCCAGAGTATTTACCGCACACGCCAAGCCAGCCCGGTATCCGTGGCACG
AGGCAGCAACTGATCCATGTCGTCAGCAGCTACTGCGATACAACCAACTA
TCTTTGCCATTAGATGTACCGCAAACTCTCTCTTCCTCTTCCTCTTCCTC
CTTGCCCTCGTTCTCGTCGTCGTCCTCCTCCTCGTCCTCCTTGTCCTCCT
CCTCCTCCTTCCCCTCGTCCTCGTTTCCTTCTTCCTCCTCCTCCTCCTTG
TCCTCCTCTTCTTCCTCGTCGTCCTCCTTTTCCTCTTTCTCCACCCCGAG
TGCTCCTGTCCACAACCGTCTGGTTACGGACAGCTTCTTAGTCCCCCCCC
GCCACCCTCAAGCGCATATCAGCAACATCAGCTGCAGCAGCTGCTACTCG
CCTTCCATCATCTCAAGCAGCACCAGCAGCAGCAGCATCAAAAGGTTCTG
GAAGCGCTGGCCGCCATGCATAATGGTACACCCCTTTCCCCCCTCCTTCT
TCGTCCTCATGGACAAGAGCAACGACCGCAACCAAGACCGCAACCGCAAC
CGCAACTCCGGTCTCAGGCACTGA
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Synonyms
Publications