Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr30 genome chr30:307804..314895 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00860.4 vs.
Match: CBJ25453.1 (alternative oxidase, mitochondrial protein [Ectocarpus siliculosus])
HSP 1 Score: 355.9 bits (912), Expect = 2.900e-94
Identity = 209/488 (42.83%), Postives = 277/488 (56.76%), Query Frame = 0
Query: 173 AMFDCGSVQSGKAGTFLIEEGSDEEDQAEKTEKRRAARQEREIFFLLDGQVRIQVRGQKVARLNQGDFLGEASFVTNRTGPRSVTAICSGETGAHYIVWNQAKLHAFLEGGKQGGKEGGGKVDAHASLSGQDHTLNELRNALTELWVRQLSKKLALTMATYERGWQPTDELEADERKYEGDFGFRNSSAFGISGPADELSKAIPSSAFKLAQWNFLREYQAIRRSFRFYEYSNVFQGLRRSVGTSSPYMDAVAVIRKLIIGAFGAIDLTLEWFGIFPTLRPSRAYMSENQQVVDLQARLRLLTLSNEAISKREETRREIQIELIDQAQAQGVGMAAKMKQSGTPWFVILPYYALCAFLDIVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHSAILYYWVLNVFFLVSPRLAYNFSELIESHAVDTYSQFLEENEELLKKLP 661
A+ G V S K LI +G ++ + R+++ L DG+ RI+V+G+ VA + GDF+GEASF + R PR+ T + + W L AF++ K + AL +W+ L+ KL M+ G Q EL +++ GD+G+R E+ +P SA LA W F REY+A+RR+FRF E+ + I G F ID LE +FP LRPSR + ++ +VVDLQ RL L LSN+AI RE R ++ +G+ A + +S TPW+V+ PY ALC FLD+V+E RP+ RFWFLETVARMPYFSY+SML LYETLGWW+ +VR+VHFAEE+NE+ HL+IMESLGGD RW DRFLARH+AI+Y+ VL + +LVSP LAYNFSELIESHAVDTY++F E NEELLK LP
Sbjct: 36 ALLKVGEVISLKGSELLISQGDTYDEPGD-----------RQLYLLSDGECRIEVKGKPVASIAPGDFVGEASFTSGRVQPRTATVRAKSDE-IRVMAWTWRDLQAFMDNPKN----------------------LRTKAALQAIWMEGLAGKLNDVMSAL--GGQSVVELAEEDKTRAGDYGYRYLE------DTREVESIVPISASTLAWWTFTREYRALRRTFRFGEFKDTG-----------------------IAGPFSIIDRFLET-SVFPVLRPSRVDLPQDPEVVDLQNRLNELKLSNKAIEDRETARIAATKAFLEDESRKGLRAAGYILRSQTPWYVMAPYKALCWFLDVVFEDRPIQRFWFLETVARMPYFSYLSMLFLYETLGWWSGAAEVRKVHFAEEYNEMQHLRIMESLGGDTRWSDRFLARHAAIIYFSVLILGYLVSPFLAYNFSELIESHAVDTYTEFAEANEELLKSLP 457
The following BLAST results are available for this feature:
BLAST of NO30G00860.4 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 2.90e-94 / Id = 42.83 Sequence CBJ25453.1
Match Name E-value Identity Description
CBJ25453.1 2.900e-94 42.83 alternative oxidase, mitochondrial protein [Ectoca... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO30G00860.4 ID=NO30G00860.4|Name=NO30G00860.4|organism=Nannochloropsis oceanica|type=mRNA|length=3058bp back to top protein sequence of NO30G00860.4
>NO30G00860.4-protein ID=NO30G00860.4-protein|Name=NO30G00860.4|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp back to top mRNA from alignment at chr30:307804..314895+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00860.4 ID=NO30G00860.4|Name=NO30G00860.4|organism=Nannochloropsis oceanica|type=mRNA|length=7092bp|location=Sequence derived from alignment at chr30:307804..314895+ (Nannochloropsis oceanica)ATGACACGCAGCGGCAGCTGCAGGAGCAGGAGCATGGACAGCAGTGTCA
GAATCAGAGGCCCACGACCACTCCATCGAAAAAGATATTTGCCCTCAAGT
CCCCGCAGTGTGCATGGCAGGTCTCTCATCCGTCTTTTTTTCCATTGCCT
TGTGCTGGCCCACATCGTCGTTGATGCCTTCATTCCTCCGTACCCCGTCG
CCTGCCCTTCCCTTCCTGTCTCGTCAACCTTTCTCAGCATTACCCAGCGG
CAGCGGCAGCAGTTCAATACATACAGCAGCAGTATCAGCAAAAGCCTAGG
CCAGGGAGGATCAACAAG GTAATCAGCCGCGGGCCCATGCAACTGCGTCC
CCTTTCCTCAGTTCCTTCCTTCCCCCCTTCCTCCTTCACTCTATCCTTTT
CTACGCCTCTTTCACAAATTTAATACACATATAAACATACATATGTACAC
ATCTATCCGAGCCAGATTTCCTATTTTTTCCCCTTCACACGCTCTAAATT
CCTACTCTTCTTTTCACTTTTTTTTTTTTTTTTTTTTTTTAATATTTTGA
ATATCACACAAAAACAATTTACCGGTGCGAAGCAGCGACCGCAGCAACAG
TATAATGAGAAGTGGGAGTAGAAGGAGCGTACTCAGACATGCTTCAACAC
TCCTCGCCTTAGACACCGCTATCCCCCGCAGGCCCACGCGGCAGATTAAC
AATTTTCCCCCCGTTAATACGTGTGTCCTGCTCTCCATTTCGAATTTAAC
TTCCTTCCCTTCCACTACCCTCTCTATCGTACGCACATACCAAAAACACA
AACAGCGACAGGCGATGCTTGCTCCGACACACCGCCGCGAGCCGTTTTGC
AACGGTTAGCATCCCTCCCAACAAGAAAAAACCAGCAACCCCTCCCCTTC
GGACTATGTCCCGTGAAG GTCCGTCTGCTCCCTCTTTCCCATCCTCCCTC
CCTCTCCTCTTCATTCCTTTCTCCTCTTTTTCCATTTTTTTCCCGATTCT
AATATCCTTTAGAGTACACAAAAGTTAATTTTTCCTTCCTCCTCCCTCCC
TCCCTCCTTCCCTCCCTCCCTCCCTCTCTGGCAGCCGCCCTTGAGAAGTG
GAGGACGTTTGTGAATGACAATCTTAATGACGCCGGCCAGAACGTGAGGG
TCTCGGTGAGGCTGGCTGATGCGATGTTCGACTGCGG GTAGGTTGCGGAA
AAAATAAGATTTTTTGTATCTTTTGAAAAAAATCTTTTGTTTTATTCATT
AATTATATTTATTCATTCATGCATTTATGCATTCACATATTCACAGTTCT
GTGCAGTCAGGAAAAGCCGGCACATTTCTCATCGAGGAAGGGTCAGACGA
AGAAGACCAGGCGGAAAAA GTGAGGGAGGGAGGGAGGCAGGGAGGGAGGG
TTGGGAGATAAGAATTAAACCGCGTGCCCATCTATCGACGGGACGAACAT
CAATGATGTAATAAAATTTATTCACTAGATTACATCATCAATTTTCGATG
AATTAATTAAGAACCCGTTACCACCATTTCTGCATAGATCAATTTAACAA
ATTGATTAAAATCTTCTCCCAATTATTATTAATGAATAATTAATTAAGTG
GACATCAATTACCTAACATCCACTCTTCACCCGCATAGACGGAGAAACGC
AGAGCGGCACGACAGGAACGAGAAATCTTCTTCCTCCTTGACGGGCAGGT
TCGCATTCAAGTGAGAGGGCAAAAAGTGGCCAGGCTGAA GTAAGGGAGAG
AGGGAAGGAGGGAGGGAAGAGGGGGTGCGCAGCAAATTTCACATCATTTA
ATGCAGAATTCCAATTCTTATGCCCACGTACCTCTCCCTCCCTCCCTCCT
TCCCTCTTTTCCTCCCTCCCCCCCCTCCCCAGTCAAGGTGATTTTCTGGG
TGAGGCTTCTTTCGTGACCAACCGCACGGGCCCTCGCTCCGTCACCGCCA
TCTGCTC GTATGTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCCCTCGATGATCCTCACGATCATGTTGTACTTGTCGAGCTCGTCTG
TCCTTCTGATACTTACGCCATCCGACTTACTGACCTACCCTCCCTTACTC
CCTCTCTCCCTTCCTTCCTCCCTCCCTCCATCCTTCCCTCGCTCCTTTCC
TCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTTAGGGGAGAGACCGGT
GCTCATTACATAGTCTGGAATCAAGCCAAGCTCCATGCCTTCCTCGAGGG
AGGGAAGCAGGGAGGGAAGGAGGGAGGGGGGAAGGTAGATGCCCATGCCT
CCCTGTCAGGACAAG GTGAGGAGGGCGGAAGGCGAGGAGGGAAGGAAGGA
GCGAAGGAGGGAGGACAGGTGAAAGAGGGAGCTCTACATGCCCTCTGCTT
CCAGGTGCCACTTCGTTTAACTCCATCCCTTTTCCTCCCTCCCTTCCTCC
GTCCCTCCGTCCCTCCCTCCCTCCCTCAGACCACACCCTGAACGAGCTCC
GGAACGCCCTCACTGAGTTGTGGGTTAGACAGCTCAGTAAAAAGCTAGCC
CTTACCATGGCCACCTACGAGCG GTACGCAAGTCTTCTCTCCTTCCCTCC
CTGCCTCCCTCCTCCCTCCTTCCCTCGTATCCAATCCACCCTCCCTTTCG
GCCCGGCCTCCCTTCCCTCCTTTCCTCCCTTTCTCCCTCCCTCCTTCCCT
TCCCTCTTCACCTGCCCTCCCACCTTTCTCTCCTCTTCTCCCTCCCTCCC
TCTCTCCCATCCCATCATATCCGCTCCTTGTAGCCCGTCATTCTGACACT
CATTTCTCCTACGCACTTCCCAACGAGTCCCAAAAGTACCTCTCCAGTTA
ACCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCAGGGGCTGGCAACCCACGGACGAGCTAGAGGCGGACGAGCG
AAAATACGAGGGAGACTTTGGCTTCCGAAACTCCTCGGCCTTTGGCATCT
CCGGTCCGGCCGATGAATTGTCGAA GTAAGGAGGGAGGGAGGGAGGGAGG
GAGGGAGAGAGTTCATGGGAAGTGAGGGAATGGGGTGTATGTCAGGATGA
CGGGCTTGAGCAAATGGACACGATGGGGATGGCATGGAAGGTGGAGGGAA
AGAAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAAATGTGTTT
GGGCGAGCAACTCCCCTCTCTCACCCTCCCCCCCTTACCTCCCTCCCTCC
CTCCCTTCCAGGGCGATTCCGAGCTCAGCTTTTAAACTTGCCCAATGGAA
TTTTCTGCGGGAGTACCAG GTACGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGACTTATGCTTGACAATTATTTCTTTGG
TGGTGCTCGGTGATTCGCCATTCGATCCGCTCTTGTGAGTGCGCCTGGTG
TCCCCAATCAATTATTTAATTTGATTTTTATTCATTGAATTTAATGATTT
GTCATTTGATTTCGTCATATCCCCCTCACAGGCGATTCGTCGCTCGTTTC
GTTTTTATGAGTACAGCAACGTCTTCCAGGGTCTTCGTAGGTCCGTGGGA
ACCAGCAG GTCAGGCGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAAGG
AGGGAGGGAAGGAGGGAGGGAGCAAGAGGGAACACGAATGGTTCGATAAA
AATCATACATGTTCATATGTATCTTAATTGCATTCTTCCTTCGCGTGTTT
CCTTCCTTTTTGGTAATTGTGCTCATTCATACTTTTCTCCTCTCGCAACA
CCCTCAAAAACACTCAGCCCGTATATGGATGCGGTGGCCGTGATTCGCAA
GCTCATCATCGGTGCCTTTGGAGCGATCGATCTG GTAACCCGTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTATCCTTCCTCTTTCTTCCTTCTCTTTCTC
GCTCCTTTTCTTTTTGCATTCCTTCATCCCTCCCTCCCTCCCTCTCTCCC
TCCCTCCCTCCCTCCCTCCCCCAGACCTTGGAATGGTTCGGCATTTTTCC
CACCCTCCGACCGTCTCGAGCGTACATGAGCGAGAACCAGCAG GTGAGAG
GGAAGGGAGGGAGGGAGGGAAGGAGAATGCAACGCTGTCATAGAGCCATA
CCTCTTATCTCTTCCAGGTAAAGATTTCACGGAGCGAGGGAGGGAGGGAG
GGAAAGAGGGAAGGAGGGAGGAAAGGAGGGAGGAGTGATGGGATTGATGT
ACTCATGTGGCGTCTCCTACAGGTCGTGGATTTACAAGCACGGCTCCGTC
TCCTCACCCTCTCCAATGAG GTACGCCCTTCCCTCCCTCCCTCTCTCCCT
CCCTCCTTCCCATTTCCCCTTCCCCCTCCTCTTTTCCCACATTCCTTCCT
TCTTCTCAGCCTTCCTCCTCCCCTCCCTCCTCTCCCCACACTTTCCCTTC
TCACCAGGCCATTAGCAAGCGCGAGGAAACACGGCGAGAGATTCAAATAG
AACTCATCGACCAGG GTACATCCTCCCCCACATCCTCCCTCCCTTCCTCC
CTCCCTCCCTCCCTCCTTTTCTCCCTCCTTCTCACCGTTCCTTAACCTCC
CATGTTTTCTTCATAGTGTTCTCCTCCTCACGCCCGTGTTTCTGACTAAC
ATTTACATCCCTCATCTGCTTCTTAATGCCCTCCTTCCCTCCCCATCACA
AGCCCGGCTCATCAAGCCCATCATTCTGACTGACACCCACACCCCTCATC
TCCCATCCACATCCCGTCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTTCCCTCCAGCCCAAGCCCAAGGCGTAGGGATGGCGGCTAAGATGA
AACAATCAGGCACCCCGTGGTTCGTCATCCTCCCCTACTACGCCCTATGC
GCCTTCCTCGACATAGTCTATGAAGGCCGCCCACTGGCCCGCTTCTGGTT
TCTGGAGACGGTCGCGCG GTACGCCCCTCTCTTCCTCCCTCCCTCCCTCC
CTCTTTGTCTCCCTCCCTCCCTCGTTGTCTGCCCGCCACGTCTTTCGCCC
CAGTGGGAGGAATGTGACTTTTCACGAAGTCACCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCAGCATGCCCT
ACTTCTCGTACATCAGCATGTTGCACTTATACGAGACGTTGGGATGGTGG
ACCATTGGCACGGACGTCAGGCGCGTGCATTTCGCGGAGG GTAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGA
GATGGGCCAGGGGTATAAAAGGTATTGGAAAGTAGGGCTCGTGGATGTTC
AAATGACGGGCTTGGTGATGTGGTCACATTCAGACGGATGAAAAGAAGGG
AGGGAGGGAAGGGAGAGAGGGAGGGGTTTGGTGCGTGGGTAGCTTACACT
ACCCCTCCTCCCTTTCTCCCTCCTTGCTTCCCTCCTTTCCTTAGAATGGA
ATGAGCTGCACCACCTGCAAATTATGGAGTCGTTGGGAGGGGACGCTCGT
TGGCTCGACCGTTTCTTGGCCCGACATTCAGCAATAT GTAAGGAGCGGAG
AGAGGGAGGGAGGAGGGGGAGGAAAGGGAAGGGGGAGGGAGTGGCAGGCA
TGTTCATTTATCACATGCATGTCCAAACACAATCTGACTTTTGCCACTGC
TACTGTTTACCCTAATGTCCCCTTTCTCCCTCCCTTCCTCCCTCCCTCCC
TCCTTCCCTTCCTCCCTCCCTCCAGTGTACTACTGGGTTTTAAACGTCTT
CTTTCTGGTCTCGCCACGCCTTGCCTACAATTTCTCCGAGTTGATTGAGA
GCCACGCCGTGGACACCTACAGTCAATTTTTGGAAGAAAATGAAGAGCTC
TTGAAGAAGCTTCCCGCCCCTCGCGTTGGTGAGGGAAGAGGGCGGGATGG
AGGGCGAGGCACACATGTAGACGTGCGTGTGTATGGACGTGTGTGGTGGG
TGTCGGTGGGTACTAATCCCATCTCCCTCCCTCTCCGCCCCCGCCCCCTA
AACCCACATGCACAGCACTAG back to top Coding sequence (CDS) from alignment at chr30:307804..314895+
>NO30G00860.4 ID=NO30G00860.4|Name=NO30G00860.4|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at chr30:307804..314895+ (Nannochloropsis oceanica) back to top