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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr30 | genome | chr30:289474..294064 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00790.1 vs.
Match: XP_009042553.1 (hypothetical protein AURANDRAFT_68599 [Aureococcus anophagefferens]; EGB02749.1 hypothetical protein AURANDRAFT_68599 [Aureococcus anophagefferens]) HSP 1 Score: 234.6 bits (597), Expect = 7.300e-58 Identity = 189/475 (39.79%), Postives = 246/475 (51.79%), Query Frame = 0
Query: 62 SFVIVALVVLNGDSARGALFPTLWPLVSSLGGNRIVQGYVVSAFSAGRLISSPYIGRLSEVYGYRPVLLTTTLLLALGTLLYASATSIYHVLVAQVVMGLGSGTLGVTRAWVAEQTERHKRTILLAYLTAVQYAGFTVMPMAGGVLSDVFQGKTWRIIGD-----LRADGYT-APALLMCGLCLLAAVLVCTVFVEKPTAAAAAAAAAAAAAENGEGGGRAALAAAAVAAPAPAAAPIHPSHSVLTLQAAADAREEGGREGGGVSSEDPPPHVTRIDGTSVSYWWPSRQDVVIYGGILLNVATKGTIALYETLGIQFATSHFPGMTAPDAGFLFASFGLVGVIALLYMKVLCKHFNDVQLILGGMVFMVASMLLMLGP--------DSFPVWRFYLAIFLMYAVGYPVGHTAAIGLFSKILGKRPQGYLMGVFGSAGSLARVVFPIVGGIIAERVSENALFSSGAAFLSVSALLL 523
SF VA +VL GDS RG FPTLWPLVSSLGG R QG +V+AFS GR++ SP+ G S +GYR VLL ++ G LLY + + AQVV+GLG GTLGVTRA+VAE R +RT+ L LTA+QYAG T G +LS G R G LR DG T A ++ G A+L+ FV+ AA AAAAAA AAPAP AA AAAD R G V + + + VSY ++ ++ + G + +G + S G+ SF +G + F+DV+L+L G+ MVAS LM+ P D+F VW A+F MYAVGYPVGHTA IG FSK +G+RPQG LMG+F SAGSLAR+VFP+ G++A +A+F++ AA L + L++
Sbjct: 29 SFWAVAYMVLLGDSVRGIFFPTLWPLVSSLGGTRAHQGIIVAAFSLGRVLVSPWYGAHSTRHGYRGVLLFAHGVIVAGALLYTQVRGLASLFAAQVVLGLGCGTLGVTRAYVAESVPRDQRTVYLGRLTAMQYAGLTTTSFLGSLLSRCGDGLAARYGGTRAGALLRLDGLTFAAYAVLAGALAAVALLLAPTFVDFVPAARPPAAAAAAG-----------------AAPAPLAAS----------DAAADRRHARLVAVGLVLNVVTKGSIGCYETLGVSY---AQAELGLPGPV---------------VGYYVSASGLVGV------LFLLSFRPLG-----------RLFDDVELVLYGIAVMVASCALMVRPVAAALGGGDAFQVW--LTALFAMYAVGYPVGHTAVIGWFSKAMGRRPQGMLMGLFASAGSLARIVFPVCTGLVAVSFGSDAVFATLAALLGATLLII 439
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00790.1 ID=NO30G00790.1|Name=NO30G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp ATGTACCCTGAGGACAGGTATGACGATAGGACGCATTTGATGCGCGGGCA GAAAGGTTCTGGTGCAAGAGGTACCAGAAAGACGGTACCCGGAGGAAGAG ACGCAGAGGAGAAGAGGATGAGAAGAAAGGATGAGAAGAAGGAGAAAAAG AAGAAGAAGTGGATCGCGTCGTGGTTCACGCCCTCCTTCGTCATCGTGGC TCTGGTCGTGCTCAATGGCGACAGCGCCCGAGGCGCCCTCTTCCCCACCC TCTGGCCTCTCGTCTCCTCCCTGGGCGGCAACAGGATCGTTCAAGGATAT GTCGTCAGTGCCTTCTCCGCGGGCCGCCTCATTTCCTCCCCCTACATCGG CCGTCTTTCCGAAGTCTACGGCTACCGCCCCGTGCTCCTCACCACCACCC TCCTCCTCGCCCTGGGTACCTTGCTCTACGCCTCAGCCACCAGTATTTAT CATGTCCTCGTGGCCCAGGTCGTGATGGGCCTGGGCTCGGGCACATTGGG AGTGACGAGGGCGTGGGTGGCGGAGCAGACGGAGAGACACAAGCGCACCA TTCTCTTGGCCTATCTAACGGCCGTGCAGTACGCAGGCTTCACCGTCATG CCCATGGCCGGGGGCGTTCTTTCGGATGTCTTCCAGGGCAAGACCTGGCG CATCATTGGAGACTTGCGGGCCGATGGCTACACAGCCCCGGCTCTCCTAA TGTGCGGTCTCTGTCTGCTTGCCGCTGTCCTCGTCTGCACTGTCTTTGTT GAAAAACCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGAAAATGGAGAAGGAGGGGGAAGAGCAGCACTAGCAGCAGCAGCAGTCG CAGCACCAGCACCAGCAGCAGCACCGATTCATCCGAGCCATTCTGTCCTT ACCCTCCAAGCAGCCGCCGACGCCCGCGAGGAGGGAGGGAGGGAGGGAGG GGGGGTGTCGAGCGAGGATCCTCCTCCCCACGTGACACGAATCGATGGAA CAAGCGTCAGTTACTGGTGGCCCTCGCGGCAGGACGTGGTTATTTATGGA GGGATTCTGTTGAATGTCGCGACCAAGGGCACCATCGCCTTATACGAGAC ATTGGGCATCCAATTCGCGACCTCCCACTTTCCTGGCATGACTGCCCCTG ATGCGGGCTTCCTGTTTGCGTCATTCGGATTGGTCGGCGTTATTGCCTTG CTCTACATGAAGGTCCTGTGCAAGCATTTCAATGACGTGCAGCTCATTTT GGGAGGGATGGTCTTCATGGTGGCGTCCATGCTGCTCATGCTCGGCCCCG ACAGTTTCCCCGTCTGGCGCTTCTACCTGGCCATCTTCCTCATGTACGCA GTGGGCTATCCCGTGGGGCATACGGCGGCCATTGGGCTCTTCTCCAAGAT CTTGGGAAAGCGACCGCAGGGCTACCTCATGGGTGTGTTTGGATCTGCGG GCTCCTTGGCCCGCGTCGTCTTTCCCATCGTTGGGGGCATCATCGCGGAA CGTGTGAGTGAAAACGCCCTCTTTTCATCGGGGGCTGCCTTCCTCTCTGT CTCGGCCTTGCTGCTCCTGGCGGCGCGGGATGAAGTGTTGCACATCTCGC AGGCGGAGCATTGA back to topprotein sequence of NO30G00790.1 >NO30G00790.1-protein ID=NO30G00790.1-protein|Name=NO30G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp MYPEDRYDDRTHLMRGQKGSGARGTRKTVPGGRDAEEKRMRRKDEKKEKK KKKWIASWFTPSFVIVALVVLNGDSARGALFPTLWPLVSSLGGNRIVQGY VVSAFSAGRLISSPYIGRLSEVYGYRPVLLTTTLLLALGTLLYASATSIY HVLVAQVVMGLGSGTLGVTRAWVAEQTERHKRTILLAYLTAVQYAGFTVM PMAGGVLSDVFQGKTWRIIGDLRADGYTAPALLMCGLCLLAAVLVCTVFV EKPTAAAAAAAAAAAAAENGEGGGRAALAAAAVAAPAPAAAPIHPSHSVL TLQAAADAREEGGREGGGVSSEDPPPHVTRIDGTSVSYWWPSRQDVVIYG GILLNVATKGTIALYETLGIQFATSHFPGMTAPDAGFLFASFGLVGVIAL LYMKVLCKHFNDVQLILGGMVFMVASMLLMLGPDSFPVWRFYLAIFLMYA VGYPVGHTAAIGLFSKILGKRPQGYLMGVFGSAGSLARVVFPIVGGIIAE RVSENALFSSGAAFLSVSALLLLAARDEVLHISQAEH* back to topmRNA from alignment at chr30:289474..294064- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00790.1 ID=NO30G00790.1|Name=NO30G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=4591bp|location=Sequence derived from alignment at chr30:289474..294064- (Nannochloropsis oceanica) ATGTACCCTGAGGACAGGTATGACGATAGGACGCATTTGATGCGCGGGCA
GAAAGGTTCTGGTGCAAGAGGTACCAGAAAGACGGTACCCGGAGGAAGAG
ACGCAGAGGAGAAGAGGATGAGAAGAAAGGATGAGAAGAAGGAGAAAAAG
AAGAAGAAGTGGATCGCGTCGTGGTTCACGCCCTCCTTCGTCATCGTGGC
TCTGGTCGTGCTCAATGGCGACAGCGCCCGAGGTACGGAGGGAGAGAGGG
AGGGACGGAGGGACGGAGGGACGGAGGGACGGAGGGAGGAAGGGTTGTGC
TGCACTCCTCACGCCTAAAAAGAGGATTTCTAAGATCATTTTTTCCACTA
CTTCCCATCCCCCCTCCTTTTCCTTCGTTCCCTCCCTCCCTCCCTCGCTC
CCTCGCTCCCTCGCTCCCTCCCTCCCCCTCCAGGCGCCCTCTTCCCCACC
CTCTGGCCTCTCGTCTCCTCCCTGGGCGGCAACAGGATCGTTCAAGGATA
TGTCGTCAGTGCCTTCTCCGCGGGCCGGTGCGTATTCTCCTTCCCTCCCT
CCCTCCCTCCTTTCCTCCTCATCACATTCACCTCCTCAAGCTTGCCATTC
CGACCAACGTCCACCCTTCCCTCCTTCCTTTTCACCATTACTCACCCACC
CACCCACCCGTCCCTCCCTCCCTTCCTCCCTCCCTCCCCCAGCCTCATTT
CCTCCCCCTACATCGGCCGTCTTTCCGAAGTCTACGGCTACCGCCCCGTG
CTCCTCACCACCACCCTCCTCCTCGCCCTGGGTACCTTGCTCTACGCCTC
AGCCACCAGTATTTATCATGTCCTCGTGGCCCAGGTCCGGAGGGACGGAG
GGAGGGAGAGAAGGAGGGAGGGAGGGCGTGGTGGGTAATCGTGCTCGGGG
TTTGTCTCTGTATTCTTGGCCCTATCTCCTTCTTTTTCTCCCTCCTTCCT
TCCCTCCCTCCTCCCTCCCTCCGTGTGACGTTCACACTCACCCCCTCCCT
CCCTCCCTCTCTCACTCACTCACTTTCTTCTCAGGTCGTGATGGGCCTGG
GCTCGGGCACATTGGGAGTGACGAGGGCGTGGGTGGCGGAGCAGACGGAG
AGACACAAGCGGTAAGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGTGGAG
ATGGGATGGTTTGGAAGAAATAATGTGGAGAAGTGTGAGTATCCATGGAG
GATAAGATAATGTGGGTGTCAGTCAGAATGACGGGCTTGAGGAGCCGGGC
TTGTGATGAGGAGGGAAGGAGGGCATTAAGAAGCAGATGAGGGATGTGGG
TGTCAGTCAGAATGACGTTCTGAAGGAGCCGGGCGTGTGATGAGGTGGGC
ATGGAGACATGTTTAATAATTTATATACATATGAATACACACACACTTAT
CACTTCCTCTCCTCCTCCCTCCTCCTACTCCCTCTCCCCCCTTCCTCCAA
AGCACCATTCTCTTGGCCTATCTAACGGCCGTGCAGTACGCAGGCTTCAC
CGTCATGCCCATGGCCGGGGGCGTTCTTTCGGATGTCTTCCAGGTGAGGG
AGGGAGGAAAGGAGAGAGGGTTGGAGGGAGGGCACGAGCAGGCGCGAGAG
CCGATTGGGAGAGTGTCGGGATGTGGATGGGAGATGAGAGGTGTGGATGT
CAGAATGACGGGCTTGATGAGCCGGGCTTGTGAAGGGGAGGGAAGAAGGG
CATTAAGAAGCAGATGAGAGATATGGGTGTCAGTCAGAAACACGGGCTGG
GGGAGAGGGACACGATAGGGAGGAAGGGAGGGAGGGAGGGAAGGAAGGAG
GGAAGGAGGAGGATTAGGTAAAAAATAGATGTGTACTAATCTTGTGCCCA
CTTACCGACATGCTATTTTCCACCCTCCGTCCCTCCCTCCCTTTCCTTTC
ACAGGGCAAGACCTGGCGCATCATTGGAGACTTGCGGGCCGATGGCTACA
CAGGTGTGTTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCTGACTTGACTATCATGTAGACGGCTGCTTACCTAT
CCCCTCGTCTACCTGTCCGTCCATCCCTCCTTCCTCCCTCCCTTCCTTCC
TAGCCCCGGCTCTCCTAATGTGCGGTCTCTGTCTGCTTGCCGCTGTCCTC
GTCTGCACTGTCTTTGTTGAAAAACCAACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGAAAATGGAGAAGGAGGGGGAAGAGCAGCAC
TAGCAGCAGCAGCAGTCGCAGCACCAGCACCAGCAGCAGCACCGATTCAT
CCGTATGTTGGACGAAGGAGGGAGAGAGGGAGGGAGGGAGGAAAGGAGGG
AGGGAGGGTTAAAGAGTTGGAACAATTATTGACCTACACATGTCCTTCCT
TCTTCTCCTGCTTTCTCTCCACACTCATCCCTCCCTCTCTCCATCCCTCC
CTTTCAGGAGCCATTCTGTCCTTACCCTCCAAGCAGCCGCCGACGCCCGC
GAGGAGGGAGGGAGGGAGGGAGGGGGGGTGTCGAGCGAGGATCCTCCTCC
CCACGTGACACGAATCGATGGAACAAGCGTCAGTTACTGGTGGCCCTCGC
GGCAGGTGAGGGAGGGGAGGAGGGAGGGAGGGAGGAGGAAGGGTCATCCC
GTCCAAATACTCTGCATAACTACTTTTGATTCGAAACGAGAACACTGTAA
CCAAAATTGTAATTGGAATTAGATTACTTAAGGAGTATTTAGATTTAATT
TTGATCATTAAGATTATCCCCACGTATTAGACTCGACCCCAAAATATCAC
CTTTTCTTATTTCTCTCCCGAGAAGCATTTTTTTCTCACACTTCCGCCGA
ACATTCATGTGGTCTCTGCACCCTCCCCTCCCTCCCTCCCTTCCTCCCTC
CCCCCTCTCTGGCCTCTCATTAGGACGTGGTTATTTATGGAGGGATTCTG
TTGAATGTCGCGACCAAGGGCACCATCGCCTTATACGAGACATTGGGTGG
GGAGGGAGGGAAAGAGGGAGGGAGGATGGGAGGGAGGGAGGGGGGGAGGG
GGGGAGGGAGGAGGGGAGGGAGGGAGGGAGGGCTTTACTCACACATAGCT
TTGATCTTCGTCATCAACGACAGGCATCCAATTCGCGACCTCCCACTTTC
CTGGCATGACTGCCCCTGATGCGGGTAAGCACTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCGCGCTTACTCCCCTCCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCCCGCGCTTACTCCCCTCCCCCTCCCTCCCTCCC
TCCCTCCATCCCTTTCCCTAGGCTTCCTGTTTGCGTCATTCGGATTGGTC
GGCGTTATTGCCTTGCTCTACATGAAGGTCCTGTGCAAGCATTTCAATGA
CGTGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGG
AGAGCCCTCATGAACTAGTTTTATGGAATGGTGAATTTCGTGGGAAATAC
GAAGGTGAGAATCACATACAGTAGTCAGAGATAAGACTTAGAAGGTCATT
CACAGTGACGGGCTGAAGGAGCCGGGCGTGTGATGAGGAGGGAAGGAGGG
CGTGAAGAAGCAAATGAGGGATGTGGGTGTCGGTCAGAATGACGGGCTGG
AGGAGGGGGCCCGTTGATTAAATTCTACCGTGCTCACAACCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCTC
TCTCTCTCTCTCTCCCTCCCTCCCTCCCTCTCTCTAGCTCATTTTGGGAG
GGATGGTCTTCATGGTGGCGTCCATGCTGCTCATGCTCGGCCCCGACAGT
TTCCCCGTCTGGCGGTAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGTAGGTGGTGTGTCTTTGTTTCGTACCCCTGATA
TGTCCCTTCTTTCTGTCTTCGTGTTCCTCCCCCTCCTCCTCCTCCTCCTT
CCCTCCCCATCATATCTTCGCCTCCTCCAGCCCGTCATTCCAACACCCGC
ATCTCCCACGGACTTTCTAACAAAATAATTTCCTCCTGAGCACCTTCTCA
CCCATCCCTCCCCTCCCGCCCTCCCTCCCTCCCTGCAGCTTCTACCTGGC
CATCTTCCTCATGTACGCAGTGGGCTATCCCGTGGGGCATACGGCGGCCA
TTGGGCTCTTCTCCAAGATCTTGGGAAAGCGACCGCAGGTCGGGAGGGAG
GGAGGGAGGGAGGGAGGGAAAAAGTGAGGAGGATGGAACAAAGTGTGCGC
AGAAGCCGAACGCATGGACACCGAACGTCACATCGTCACCTCATCACCTC
CTTCTTCCTTTTCTCTCCTTCCTTCCCTCCCCCTCTCCCTCTCTAGGGCT
ACCTCATGGGTGTGTTTGGATCTGCGGGCTCCTTGGCCCGCGTCGTCTTT
CCCATCGTTGGGGGCATCATCGCGGAACGTGTGAGTGAAAACGCCCTCTT
TTCATCGGGGGCTGCCTTCCTCTCTGTCTCGGCCTTGCTGCTCCTGGCGG
CGCGGGATGAAGTGTTGCACATCTCGCAGGCGGAGCATTGA back to topCoding sequence (CDS) from alignment at chr30:289474..294064- >NO30G00790.1 ID=NO30G00790.1|Name=NO30G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1614bp|location=Sequence derived from alignment at chr30:289474..294064- (Nannochloropsis oceanica) ATGTACCCTGAGGACAGGTATGACGATAGGACGCATTTGATGCGCGGGCA GAAAGGTTCTGGTGCAAGAGGTACCAGAAAGACGGTACCCGGAGGAAGAG ACGCAGAGGAGAAGAGGATGAGAAGAAAGGATGAGAAGAAGGAGAAAAAG AAGAAGAAGTGGATCGCGTCGTGGTTCACGCCCTCCTTCGTCATCGTGGC TCTGGTCGTGCTCAATGGCGACAGCGCCCGAGGCGCCCTCTTCCCCACCC TCTGGCCTCTCGTCTCCTCCCTGGGCGGCAACAGGATCGTTCAAGGATAT GTCGTCAGTGCCTTCTCCGCGGGCCGCCTCATTTCCTCCCCCTACATCGG CCGTCTTTCCGAAGTCTACGGCTACCGCCCCGTGCTCCTCACCACCACCC TCCTCCTCGCCCTGGGTACCTTGCTCTACGCCTCAGCCACCAGTATTTAT CATGTCCTCGTGGCCCAGGTCGTGATGGGCCTGGGCTCGGGCACATTGGG AGTGACGAGGGCGTGGGTGGCGGAGCAGACGGAGAGACACAAGCGCACCA TTCTCTTGGCCTATCTAACGGCCGTGCAGTACGCAGGCTTCACCGTCATG CCCATGGCCGGGGGCGTTCTTTCGGATGTCTTCCAGGGCAAGACCTGGCG CATCATTGGAGACTTGCGGGCCGATGGCTACACAGCCCCGGCTCTCCTAA TGTGCGGTCTCTGTCTGCTTGCCGCTGTCCTCGTCTGCACTGTCTTTGTT GAAAAACCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGAAAATGGAGAAGGAGGGGGAAGAGCAGCACTAGCAGCAGCAGCAGTCG CAGCACCAGCACCAGCAGCAGCACCGATTCATCCGAGCCATTCTGTCCTT ACCCTCCAAGCAGCCGCCGACGCCCGCGAGGAGGGAGGGAGGGAGGGAGG GGGGGTGTCGAGCGAGGATCCTCCTCCCCACGTGACACGAATCGATGGAA CAAGCGTCAGTTACTGGTGGCCCTCGCGGCAGGACGTGGTTATTTATGGA GGGATTCTGTTGAATGTCGCGACCAAGGGCACCATCGCCTTATACGAGAC ATTGGGCATCCAATTCGCGACCTCCCACTTTCCTGGCATGACTGCCCCTG ATGCGGGCTTCCTGTTTGCGTCATTCGGATTGGTCGGCGTTATTGCCTTG CTCTACATGAAGGTCCTGTGCAAGCATTTCAATGACGTGCAGCTCATTTT GGGAGGGATGGTCTTCATGGTGGCGTCCATGCTGCTCATGCTCGGCCCCG ACAGTTTCCCCGTCTGGCGCTTCTACCTGGCCATCTTCCTCATGTACGCA GTGGGCTATCCCGTGGGGCATACGGCGGCCATTGGGCTCTTCTCCAAGAT CTTGGGAAAGCGACCGCAGGGCTACCTCATGGGTGTGTTTGGATCTGCGG GCTCCTTGGCCCGCGTCGTCTTTCCCATCGTTGGGGGCATCATCGCGGAA CGTGTGAGTGAAAACGCCCTCTTTTCATCGGGGGCTGCCTTCCTCTCTGT CTCGGCCTTGCTGCTCCTGGCGGCGCGGGATGAAGTGTTGCACATCTCGC AGGCGGAGCATTGA back to top
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