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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr30 | genome | chr30:262755..265481 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00730.1 vs.
Match: WP_101008954.1 (FAD-binding oxidoreductase [Nitrosotalea sp. Nd2]; SHO42873.1 putative FAD dependent oxidoreductase [Nitrosotalea sp. Nd2]) HSP 1 Score: 326.2 bits (835), Expect = 2.900e-85 Identity = 176/413 (42.62%), Postives = 252/413 (61.02%), Query Frame = 0
Query: 437 KRVAVLGGGIQGCTMALLFEKHGYDVTIFDKSTDILNRASSNQEGKIHLGLVYSGDQTLKTGARMLESALRFSGYLEYLVGETIDWAKWKSSKFHYMVPYDSILSPTELELYFNNLQAIYYEMLKGDPTLSYLGERPQRLYRPIPLNKTLVNESFFEAAFESEEYAISHSELKLAIKRALRSKHTIHTLLNTIVLETRREVGNFSALDRNTTFQIVTNLGVHGG---FDKVVNCLWEGRREIDQQMGIPAWSGNNVRLKFGIKTEYMEPLATMPSMTIVNGPFGDFVNYPGDQKMYFSWYPVSMHGMVVDEKIPAELHDIADGAIPRELASFQIDSHQQSFDAMLLPQGPALDFKCPELVGGFILGNGKSDIQNRDSLLHTRCDEPIYHEDGYFSISTQKFTSAPYHAYLLEK 847
K+ VLGGGIQGC +AL+ +KHGY+V++ DK+ +ILNRAS N GKIHLG V+ D +LKTG +L SAL F+ YLEYL+ +DW K+KS+ F+Y+V DS+LSPT++ YF L+ Y + +K + L YLG+RPQ+L++ + + VN F+A F +EE + IK+ ++S++ I L R V N +D F + N G D V +CLWEG ++D++MGI N+RLKFGI T+ L + S TI+ GP+GD+V+YP YFSWYP SM GM+VD+K+P++ + DG IP + ++ + F + L+P P +F+ + G I+ NG SDI + +S LH R + PI DGYFSI+T K T+AP + YLLEK
Sbjct: 2 KKALVLGGGIQGCCVALMLKKHGYEVSLIDKNENILNRASLNGTGKIHLGFVFGADPSLKTGKNLLLSALYFAPYLEYLLDAKVDWEKFKSTSFNYLVAKDSMLSPTQVNAYFQTLEDSYLDHIK-NKNLMYLGKRPQKLFQETTIPEQ-VNPDLFQACFATEEVCLYLESFNEVIKKKIQSEN--------IPLYLNRRVTNVKRIDDG--FIVDANSGDGSNQIKSDLVFSCLWEGNMDLDKKMGIMIKKDYNLRLKFGIITKSPLALKRLSSFTIIQGPYGDYVSYPQRNAAYFSWYPSSMKGMLVDQKMPSDWDALCDGHIPDTMGRILVNENNVHF-SHLIPDLP--EFETIAIRSGVIVANGYSDIYDVNSKLHERNEFPIMQNDGYFSINTGKLTNAPRNTYLLEK 399
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00730.1 ID=NO30G00730.1|Name=NO30G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp
ACAGGGATAATTAGCTATTTGCCCCTTGGACCTAGGCCAGACCATGTGGA
TCAGCAAGACGTATCTGTGCTACTTGGCAGCAGCTGTCTGGGTCATACTT
ACGTTCATCGCCCATGATCAAATGTTGCACCTAGGTGGCTTGAGAAGCAG
CAGAGCATATACATCATCAAGTGACGATCGGGGTATTCATATGGACAAGG
ACTACCATTCTACACTCGCTCCTCTCACCGACGGGGTTTCGGATACAGAT
GACAACAAGGCCAACGTGGTGAAGGAAGGGTGTAACCGGAACCAGGGCTT
GATATCGACGCCAGAAGATGTGAGCGGGACGCCTCCTTTAGTTACTGTAT
GCATTCCAGTGTTTGAGGGATCACTCACGTTAGAAGAGACCGTGCGAAGC
GTGTCCAACCAGACATACAGCAATATTGAGTTGCTCATATCTTTTGACCC
GTGTGCTGACACGGACTTATGCAAGGATTTTGTCGCAAAACTGGAGAAAC
ATCTTCGAGAGACCGGCCAGCAAAATATTCACATCACGACGTTCAGTCAC
GAAGCGCATTTGGGGTGGATATCAAACGTGAACTTTTTGCTGCTTCAGGC
ACAAGGTGCTTTTGTGAGCATTTTGCCCGACGACGATACTATTCCATCGA
ACTACTACGAAGAGTTGGCGGCCTGTTTGACGGCCAATCCTGCCGCCATC
AACTGTTTCCCCTACGTTGTGTGCAAAGGTGTCTCTGATCGCCAGGAGGA
GAAGAGAAGGGCGAAACTTCCTTCCACCTCTGCAGCTTCGACTTCCGCCT
ATCAGGTTTCTTGCCAAGAAATACATCAAAAAAGCATCCGCGGTTCAAGG
GAAGACCGCATATATGCAGCCGTGAAACATCATAAAGGAGTGAGTTTCCG
CGGCCTAGTGAGAAACGGCCAACACCAACAGCTACCGGGGTGGACGGCAG
ATGGGCTGTCAATCGGCAACAATATGCGCGACTTCTTGCTTCAGCCGACC
CATAACGACTACTACGTCGCAGATATAACACAAATTATGCAGCACGCAGT
TGCAGGGGACTTAATTGCCGTTGATGTCCCCTATTTCAAATTGTTTCAAC
CCAACCAGATTCATCGCTTCCAAATAAATAGCATGTCCGCTGAGGATAAG
ATGCAGGCGTGGGTCGACCATTTTGCGAATATCTACAATGTAGCCCACTT
ATATACGTCGTCCAGCCAAAACTTCTATCAAGCATGTACAGACAATCTAC
TGACAACTTTACCAAGGGTTGCTGGCATTTCTGCAACTCCTGAGCCCGAA
AAAATTCTGGCCATCTTTCGACACAAAATAAGCGAGGCAAAGAGCAACAA
GAAGCGTGTCGCCGTATTGGGAGGAGGGATTCAAGGCTGCACAATGGCAC
TTTTGTTTGAAAAACACGGATACGATGTGACAATCTTTGACAAGAGCACA
GATATACTGAATCGTGCAAGTAGCAACCAAGAAGGGAAGATCCATCTGGG
CTTGGTTTACAGTGGTGACCAGACCCTGAAAACTGGGGCACGAATGTTGG
AGAGCGCTCTACGGTTTTCCGGCTACTTGGAGTACCTTGTAGGAGAAACT
ATTGACTGGGCCAAGTGGAAGTCATCCAAGTTTCATTATATGGTACCCTA
TGACTCAATTCTTTCCCCAACGGAGTTGGAGTTGTACTTCAACAACTTGC
AAGCCATCTACTACGAAATGCTCAAGGGTGACCCGACCCTCTCTTACCTG
GGCGAACGCCCTCAGCGACTATACCGTCCAATCCCGTTAAATAAAACCTT
GGTGAACGAGTCCTTCTTCGAAGCAGCCTTCGAGTCAGAGGAATACGCCA
TTTCACACTCCGAGTTAAAGCTTGCCATCAAGCGGGCATTGAGATCGAAG
CACACAATACACACACTTTTGAATACGATTGTCCTTGAAACACGTAGGGA
GGTTGGAAACTTTTCTGCCCTTGACCGGAATACGACGTTCCAAATCGTCA
CAAATCTTGGGGTTCACGGAGGATTTGACAAGGTTGTCAATTGTCTTTGG
GAGGGACGCCGCGAAATCGACCAGCAAATGGGTATTCCTGCTTGGAGCGG
CAACAATGTTCGCTTGAAATTTGGTATCAAGACAGAATATATGGAGCCGT
TGGCCACAATGCCAAGCATGACGATTGTCAACGGTCCCTTTGGGGATTTT
GTAAACTATCCCGGAGATCAGAAAATGTATTTCAGTTGGTATCCAGTCAG
CATGCATGGGATGGTCGTGGACGAAAAAATACCCGCAGAACTACACGACA
TTGCAGACGGGGCGATACCAAGGGAATTAGCGAGCTTTCAAATTGATTCT
CATCAGCAAAGTTTCGACGCCATGCTGCTTCCCCAAGGACCAGCCCTTGA
CTTCAAGTGCCCCGAGCTGGTGGGTGGCTTTATTTTGGGGAATGGCAAGA
GTGACATTCAGAATCGGGACAGCTTGCTTCACACTCGTTGTGATGAGCCA
ATCTACCATGAGGACGGCTATTTCTCTATTTCGACGCAAAAGTTCACCTC
AGCCCCGTACCATGCATACTTGCTTGAAAAAAGATTCCTTTCTCGGAATG
GAAAGGAAAATCGATGACAAGGTCGTCCGAGACCAAAAGGAGAAAATCTT
GAATGTTTTTATTGAATATGTATAGATCTATCTACCCCCCAAAAAAACGA
CATTTTTCGCATTCTTCTCTACTCAGG back to topprotein sequence of NO30G00730.1 >NO30G00730.1-protein ID=NO30G00730.1-protein|Name=NO30G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=858bp
MWISKTYLCYLAAAVWVILTFIAHDQMLHLGGLRSSRAYTSSSDDRGIHM
DKDYHSTLAPLTDGVSDTDDNKANVVKEGCNRNQGLISTPEDVSGTPPLV
TVCIPVFEGSLTLEETVRSVSNQTYSNIELLISFDPCADTDLCKDFVAKL
EKHLRETGQQNIHITTFSHEAHLGWISNVNFLLLQAQGAFVSILPDDDTI
PSNYYEELAACLTANPAAINCFPYVVCKGVSDRQEEKRRAKLPSTSAAST
SAYQVSCQEIHQKSIRGSREDRIYAAVKHHKGVSFRGLVRNGQHQQLPGW
TADGLSIGNNMRDFLLQPTHNDYYVADITQIMQHAVAGDLIAVDVPYFKL
FQPNQIHRFQINSMSAEDKMQAWVDHFANIYNVAHLYTSSSQNFYQACTD
NLLTTLPRVAGISATPEPEKILAIFRHKISEAKSNKKRVAVLGGGIQGCT
MALLFEKHGYDVTIFDKSTDILNRASSNQEGKIHLGLVYSGDQTLKTGAR
MLESALRFSGYLEYLVGETIDWAKWKSSKFHYMVPYDSILSPTELELYFN
NLQAIYYEMLKGDPTLSYLGERPQRLYRPIPLNKTLVNESFFEAAFESEE
YAISHSELKLAIKRALRSKHTIHTLLNTIVLETRREVGNFSALDRNTTFQ
IVTNLGVHGGFDKVVNCLWEGRREIDQQMGIPAWSGNNVRLKFGIKTEYM
EPLATMPSMTIVNGPFGDFVNYPGDQKMYFSWYPVSMHGMVVDEKIPAEL
HDIADGAIPRELASFQIDSHQQSFDAMLLPQGPALDFKCPELVGGFILGN
GKSDIQNRDSLLHTRCDEPIYHEDGYFSISTQKFTSAPYHAYLLEKRFLS
RNGKENR* back to topmRNA from alignment at chr30:262755..265481- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00730.1 ID=NO30G00730.1|Name=NO30G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp|location=Sequence derived from alignment at chr30:262755..265481- (Nannochloropsis oceanica)
ACAGGGATAATTAGCTATTTGCCCCTTGGACCTAGGCCAGACCATGTGGA
TCAGCAAGACGTATCTGTGCTACTTGGCAGCAGCTGTCTGGGTCATACTT
ACGTTCATCGCCCATGATCAAATGTTGCACCTAGGTGGCTTGAGAAGCAG
CAGAGCATATACATCATCAAGTGACGATCGGGGTATTCATATGGACAAGG
ACTACCATTCTACACTCGCTCCTCTCACCGACGGGGTTTCGGATACAGAT
GACAACAAGGCCAACGTGGTGAAGGAAGGGTGTAACCGGAACCAGGGCTT
GATATCGACGCCAGAAGATGTGAGCGGGACGCCTCCTTTAGTTACTGTAT
GCATTCCAGTGTTTGAGGGATCACTCACGTTAGAAGAGACCGTGCGAAGC
GTGTCCAACCAGACATACAGCAATATTGAGTTGCTCATATCTTTTGACCC
GTGTGCTGACACGGACTTATGCAAGGATTTTGTCGCAAAACTGGAGAAAC
ATCTTCGAGAGACCGGCCAGCAAAATATTCACATCACGACGTTCAGTCAC
GAAGCGCATTTGGGGTGGATATCAAACGTGAACTTTTTGCTGCTTCAGGC
ACAAGGTGCTTTTGTGAGCATTTTGCCCGACGACGATACTATTCCATCGA
ACTACTACGAAGAGTTGGCGGCCTGTTTGACGGCCAATCCTGCCGCCATC
AACTGTTTCCCCTACGTTGTGTGCAAAGGTGTCTCTGATCGCCAGGAGGA
GAAGAGAAGGGCGAAACTTCCTTCCACCTCTGCAGCTTCGACTTCCGCCT
ATCAGGTTTCTTGCCAAGAAATACATCAAAAAAGCATCCGCGGTTCAAGG
GAAGACCGCATATATGCAGCCGTGAAACATCATAAAGGAGTGAGTTTCCG
CGGCCTAGTGAGAAACGGCCAACACCAACAGCTACCGGGGTGGACGGCAG
ATGGGCTGTCAATCGGCAACAATATGCGCGACTTCTTGCTTCAGCCGACC
CATAACGACTACTACGTCGCAGATATAACACAAATTATGCAGCACGCAGT
TGCAGGGGACTTAATTGCCGTTGATGTCCCCTATTTCAAATTGTTTCAAC
CCAACCAGATTCATCGCTTCCAAATAAATAGCATGTCCGCTGAGGATAAG
ATGCAGGCGTGGGTCGACCATTTTGCGAATATCTACAATGTAGCCCACTT
ATATACGTCGTCCAGCCAAAACTTCTATCAAGCATGTACAGACAATCTAC
TGACAACTTTACCAAGGGTTGCTGGCATTTCTGCAACTCCTGAGCCCGAA
AAAATTCTGGCCATCTTTCGACACAAAATAAGCGAGGCAAAGAGCAACAA
GAAGCGTGTCGCCGTATTGGGAGGAGGGATTCAAGGCTGCACAATGGCAC
TTTTGTTTGAAAAACACGGATACGATGTGACAATCTTTGACAAGAGCACA
GATATACTGAATCGTGCAAGTAGCAACCAAGAAGGGAAGATCCATCTGGG
CTTGGTTTACAGTGGTGACCAGACCCTGAAAACTGGGGCACGAATGTTGG
AGAGCGCTCTACGGTTTTCCGGCTACTTGGAGTACCTTGTAGGAGAAACT
ATTGACTGGGCCAAGTGGAAGTCATCCAAGTTTCATTATATGGTACCCTA
TGACTCAATTCTTTCCCCAACGGAGTTGGAGTTGTACTTCAACAACTTGC
AAGCCATCTACTACGAAATGCTCAAGGGTGACCCGACCCTCTCTTACCTG
GGCGAACGCCCTCAGCGACTATACCGTCCAATCCCGTTAAATAAAACCTT
GGTGAACGAGTCCTTCTTCGAAGCAGCCTTCGAGTCAGAGGAATACGCCA
TTTCACACTCCGAGTTAAAGCTTGCCATCAAGCGGGCATTGAGATCGAAG
CACACAATACACACACTTTTGAATACGATTGTCCTTGAAACACGTAGGGA
GGTTGGAAACTTTTCTGCCCTTGACCGGAATACGACGTTCCAAATCGTCA
CAAATCTTGGGGTTCACGGAGGATTTGACAAGGTTGTCAATTGTCTTTGG
GAGGGACGCCGCGAAATCGACCAGCAAATGGGTATTCCTGCTTGGAGCGG
CAACAATGTTCGCTTGAAATTTGGTATCAAGACAGAATATATGGAGCCGT
TGGCCACAATGCCAAGCATGACGATTGTCAACGGTCCCTTTGGGGATTTT
GTAAACTATCCCGGAGATCAGAAAATGTATTTCAGTTGGTATCCAGTCAG
CATGCATGGGATGGTCGTGGACGAAAAAATACCCGCAGAACTACACGACA
TTGCAGACGGGGCGATACCAAGGGAATTAGCGAGCTTTCAAATTGATTCT
CATCAGCAAAGTTTCGACGCCATGCTGCTTCCCCAAGGACCAGCCCTTGA
CTTCAAGTGCCCCGAGCTGGTGGGTGGCTTTATTTTGGGGAATGGCAAGA
GTGACATTCAGAATCGGGACAGCTTGCTTCACACTCGTTGTGATGAGCCA
ATCTACCATGAGGACGGCTATTTCTCTATTTCGACGCAAAAGTTCACCTC
AGCCCCGTACCATGCATACTTGCTTGAAAAAAGATTCCTTTCTCGGAATG
GAAAGGAAAATCGATGACAAGGTCGTCCGAGACCAAAAGGAGAAAATCTT
GAATGTTTTTATTGAATATGTATAGATCTATCTACCCCCCAAAAAAACGA
CATTTTTCGCATTCTTCTCTACTCAGG back to topCoding sequence (CDS) from alignment at chr30:262755..265481- >NO30G00730.1 ID=NO30G00730.1|Name=NO30G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at chr30:262755..265481- (Nannochloropsis oceanica)
ATGTGGATCAGCAAGACGTATCTGTGCTACTTGGCAGCAGCTGTCTGGGT
CATACTTACGTTCATCGCCCATGATCAAATGTTGCACCTAGGTGGCTTGA
GAAGCAGCAGAGCATATACATCATCAAGTGACGATCGGGGTATTCATATG
GACAAGGACTACCATTCTACACTCGCTCCTCTCACCGACGGGGTTTCGGA
TACAGATGACAACAAGGCCAACGTGGTGAAGGAAGGGTGTAACCGGAACC
AGGGCTTGATATCGACGCCAGAAGATGTGAGCGGGACGCCTCCTTTAGTT
ACTGTATGCATTCCAGTGTTTGAGGGATCACTCACGTTAGAAGAGACCGT
GCGAAGCGTGTCCAACCAGACATACAGCAATATTGAGTTGCTCATATCTT
TTGACCCGTGTGCTGACACGGACTTATGCAAGGATTTTGTCGCAAAACTG
GAGAAACATCTTCGAGAGACCGGCCAGCAAAATATTCACATCACGACGTT
CAGTCACGAAGCGCATTTGGGGTGGATATCAAACGTGAACTTTTTGCTGC
TTCAGGCACAAGGTGCTTTTGTGAGCATTTTGCCCGACGACGATACTATT
CCATCGAACTACTACGAAGAGTTGGCGGCCTGTTTGACGGCCAATCCTGC
CGCCATCAACTGTTTCCCCTACGTTGTGTGCAAAGGTGTCTCTGATCGCC
AGGAGGAGAAGAGAAGGGCGAAACTTCCTTCCACCTCTGCAGCTTCGACT
TCCGCCTATCAGGTTTCTTGCCAAGAAATACATCAAAAAAGCATCCGCGG
TTCAAGGGAAGACCGCATATATGCAGCCGTGAAACATCATAAAGGAGTGA
GTTTCCGCGGCCTAGTGAGAAACGGCCAACACCAACAGCTACCGGGGTGG
ACGGCAGATGGGCTGTCAATCGGCAACAATATGCGCGACTTCTTGCTTCA
GCCGACCCATAACGACTACTACGTCGCAGATATAACACAAATTATGCAGC
ACGCAGTTGCAGGGGACTTAATTGCCGTTGATGTCCCCTATTTCAAATTG
TTTCAACCCAACCAGATTCATCGCTTCCAAATAAATAGCATGTCCGCTGA
GGATAAGATGCAGGCGTGGGTCGACCATTTTGCGAATATCTACAATGTAG
CCCACTTATATACGTCGTCCAGCCAAAACTTCTATCAAGCATGTACAGAC
AATCTACTGACAACTTTACCAAGGGTTGCTGGCATTTCTGCAACTCCTGA
GCCCGAAAAAATTCTGGCCATCTTTCGACACAAAATAAGCGAGGCAAAGA
GCAACAAGAAGCGTGTCGCCGTATTGGGAGGAGGGATTCAAGGCTGCACA
ATGGCACTTTTGTTTGAAAAACACGGATACGATGTGACAATCTTTGACAA
GAGCACAGATATACTGAATCGTGCAAGTAGCAACCAAGAAGGGAAGATCC
ATCTGGGCTTGGTTTACAGTGGTGACCAGACCCTGAAAACTGGGGCACGA
ATGTTGGAGAGCGCTCTACGGTTTTCCGGCTACTTGGAGTACCTTGTAGG
AGAAACTATTGACTGGGCCAAGTGGAAGTCATCCAAGTTTCATTATATGG
TACCCTATGACTCAATTCTTTCCCCAACGGAGTTGGAGTTGTACTTCAAC
AACTTGCAAGCCATCTACTACGAAATGCTCAAGGGTGACCCGACCCTCTC
TTACCTGGGCGAACGCCCTCAGCGACTATACCGTCCAATCCCGTTAAATA
AAACCTTGGTGAACGAGTCCTTCTTCGAAGCAGCCTTCGAGTCAGAGGAA
TACGCCATTTCACACTCCGAGTTAAAGCTTGCCATCAAGCGGGCATTGAG
ATCGAAGCACACAATACACACACTTTTGAATACGATTGTCCTTGAAACAC
GTAGGGAGGTTGGAAACTTTTCTGCCCTTGACCGGAATACGACGTTCCAA
ATCGTCACAAATCTTGGGGTTCACGGAGGATTTGACAAGGTTGTCAATTG
TCTTTGGGAGGGACGCCGCGAAATCGACCAGCAAATGGGTATTCCTGCTT
GGAGCGGCAACAATGTTCGCTTGAAATTTGGTATCAAGACAGAATATATG
GAGCCGTTGGCCACAATGCCAAGCATGACGATTGTCAACGGTCCCTTTGG
GGATTTTGTAAACTATCCCGGAGATCAGAAAATGTATTTCAGTTGGTATC
CAGTCAGCATGCATGGGATGGTCGTGGACGAAAAAATACCCGCAGAACTA
CACGACATTGCAGACGGGGCGATACCAAGGGAATTAGCGAGCTTTCAAAT
TGATTCTCATCAGCAAAGTTTCGACGCCATGCTGCTTCCCCAAGGACCAG
CCCTTGACTTCAAGTGCCCCGAGCTGGTGGGTGGCTTTATTTTGGGGAAT
GGCAAGAGTGACATTCAGAATCGGGACAGCTTGCTTCACACTCGTTGTGA
TGAGCCAATCTACCATGAGGACGGCTATTTCTCTATTTCGACGCAAAAGT
TCACCTCAGCCCCGTACCATGCATACTTGCTTGAAAAAAGATTCCTTTCT
CGGAATGGAAAGGAAAATCGATGA back to top
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