NO30G00690.1, NO30G00690.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00690.1
Unique Name	NO30G00690.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1842
Alignment location	chr30:252880..255044 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:252880..255044 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO30G00690.1 vs.
Match: EWM20605.1 (camp-dependent protein kinase, partial [Nannochloropsis gaditana])

HSP 1 Score: 179.1 bits (453), Expect = 4.200e-41
Identity = 119/290 (41.03%), Postives = 155/290 (53.45%), Query Frame = 0

Query:  318 PPSFPSSLQASTLPTRERVFDERSVKYVAAALLSLLGDLHESQLLFRGLQPELLYVDALGRLLATDFRHAKVGLEKTYTLCGHAAYAAPEMVSRRGHQQAVDYWQLGILLFELLTGGDTPFALAAAATHAAQNEKGATAGGGGGGVEARGEDEKAPLPTEDEIYRSISSYTSSSFLPWPSTLPLSPDCKSFISSLLAPNPSSRLGSRQGTVEGKTHRWLKGMKFDELFCASFGGGGGGREGRREMLSPLYPVTQAWLRKKLVGVDGEGGWEEVAEAWRRVNEGRYEGKQE 608
            PP+ P SL  +  P+  R   E S++YVA + L+LLG LHESQ+LFRG  P+ L++DALGRL  TD RHAKVGLEK+YTLCG                    YW   +L  +    G   + L          E+             RG       PT   +  +I+ Y +++ L WP     S DC+SF+S LL P P  RLG+R GTVEGK+HRWL+  ++          GGGGREG +E++SPLYPV QAWL +  VG   +   +EV EAW RV  GR  G+ E
Sbjct:    1 PPAHPPSLPPALPPSGVR---EASLRYVAWSCLTLLGQLHESQILFRGFHPDALFLDALGRLKVTDLRHAKVGLEKSYTLCGPP-----------------GYWAPEMLTGDGYVQGVDYWQLGVLLFELLTGEE-----------PLRG-------PTVAAVKEAIADYENAATLGWPGEAVCSLDCRSFLSGLLTPIPKVRLGARLGTVEGKSHRWLRKEEW----------GGGGREGGKEVVSPLYPVVQAWLSR--VGGREDEVQKEVDEAWERV-MGREGGEGE 239

The following BLAST results are available for this feature:

BLAST of NO30G00690.1 vs.

BLAST of NO30G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20605.1	4.200e-41	41.03	camp-dependent protein kinase, partial [Nannochlor...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00690	NO30G00690	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00690.1	NO30G00690.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00690.1.cds1	NO30G00690.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00690.1.cds2	NO30G00690.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00690.1.cds3	NO30G00690.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:252880..255044+
coding sequence from alignment at chr30:252880..255044+

mRNA sequence

>NO30G00690.1 ID=NO30G00690.1|Name=NO30G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp
ATGATTAGGAATTCGTCGGCTTCGAGGAGTATCAATATAGGAGGAGGAAA
TACGGTGGCTTCTGCTGTATTTGCAGCAGCCGCAGCAGCAGCAACGACAA
CAATAACAACAGCAGAAGGGCGGGTAACGACTGCTGCCGCTGAAAGGGGA
GGGAGGGAGGGAGAGAGGAATTCGGGGGTGGTTGCTGCACTGGTGGCGGC
GGCCGCAATGGGGGAAAGGACTGTCGAGGTGCCGGAGATGAGGGAGGGGA
GGGGGGAGGGAGGGAGGGCGGGCGTGTTAGAGAGACTGGCATTGGTTCAC
GAGGATGACTTGGGAGCTGTCTTTCTAGCCCGGTATCCCACTGCTGCGGC
TGCTGCTGCTGCTGCCGCTACAGCACCGCCGGCTTCTTCCTCCAAGCCAG
CCTTCACAAGGAGCAACAGCAGCGGGAGCAAGGGCCCGTCTTCCTTCTTC
CTCAAGACCTCTCTCACGCCCGCCGTCAAGAAAGATGAGGTGAACCCGAG
CCCTTCCTCCGTCCCTTCATACACCTACTGCCTCCTCCGCGCCAGCAACA
AGGCGTCTCTCGTCGCCTCCCACGCGGAAGCGGCTGCTCTTAAGCGTGCG
GCCCTGAGCAGCCTCTTGTCCTCCCGCCTCGCGCCTCGAGGAGGGGCCTC
CCCCTTCCTCCCTCCCCTTATCGCCTCCTTCTCCAGCAGCAACACGCACC
CCCACACCTTCCTGCAGCTCCTCGCAGGCCAGCCGGTTGCCTCCTTCCGG
CGTCTCTTGCAGGAGGGATGGGGGGAGGGAGGGGTCGAAGGAGGGAGGGA
GGGACGTTTTCTCCATTCTTCTTCTCCTTCATTCTTCTCGTGGGGAGGGG
GCGGTAACCCCTCGTCGTCGGCTACCCCCTCGCCCTCTTCCTCTCCTGCC
AAGCCGAATCAGCCACATCAGCTGCCTCAGGATCACGCGACCGGCGTGCT
CCCTCCTTCCTTCCCTTCCTCCCTCCAGGCCTCGACCTTGCCCACACGGG
AAAGGGTCTTTGACGAGAGAAGTGTGAAGTATGTGGCCGCCGCCCTCCTC
TCCCTCCTCGGAGACCTGCACGAGAGCCAGCTTCTCTTCCGGGGCCTGCA
GCCGGAGTTGCTGTACGTGGATGCACTGGGGAGGCTGCTGGCGACCGATT
TCAGACACGCCAAAGTCGGATTGGAGAAGACCTACACCCTGTGTGGCCAC
GCCGCCTACGCAGCCCCCGAGATGGTTTCCCGCCGAGGCCACCAGCAGGC
TGTCGACTACTGGCAGCTCGGCATCTTGCTCTTCGAGCTCCTCACCGGCG
GCGACACCCCCTTTGCCCTGGCTGCTGCTGCCACTCATGCCGCCCAAAAT
GAAAAAGGAGCAACGGCAGGAGGAGGAGGAGGCGGGGTCGAGGCGAGGGG
GGAGGACGAAAAGGCACCACTGCCAACTGAAGATGAGATTTACCGCTCCA
TCTCCTCCTACACCTCTTCCTCCTTCTTGCCCTGGCCCTCCACCCTCCCT
CTCTCTCCCGACTGCAAGTCCTTTATTTCCTCCCTCCTGGCTCCCAACCC
CTCCTCGCGCCTGGGGTCCCGCCAAGGGACTGTAGAAGGAAAGACCCACA
GGTGGCTCAAGGGAATGAAGTTCGATGAACTCTTCTGTGCTTCCTTTGGC
GGAGGAGGGGGAGGTAGGGAGGGAAGGAGAGAGATGTTATCTCCGCTGTA
CCCAGTGACGCAAGCATGGTTGAGGAAGAAGCTGGTAGGGGTGGATGGGG
AGGGAGGATGGGAGGAGGTGGCGGAGGCTTGGAGGAGGGTGAATGAGGGC
AGGTATGAAGGGAAGCAGGAGTTGTATGAATTTGGGTTTTAA

protein sequence of NO30G00690.1

>NO30G00690.1-protein ID=NO30G00690.1-protein|Name=NO30G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MIRNSSASRSINIGGGNTVASAVFAAAAAAATTTITTAEGRVTTAAAERG
GREGERNSGVVAALVAAAAMGERTVEVPEMREGRGEGGRAGVLERLALVH
EDDLGAVFLARYPTAAAAAAAAATAPPASSSKPAFTRSNSSGSKGPSSFF
LKTSLTPAVKKDEVNPSPSSVPSYTYCLLRASNKASLVASHAEAAALKRA
ALSSLLSSRLAPRGGASPFLPPLIASFSSSNTHPHTFLQLLAGQPVASFR
RLLQEGWGEGGVEGGREGRFLHSSSPSFFSWGGGGNPSSSATPSPSSSPA
KPNQPHQLPQDHATGVLPPSFPSSLQASTLPTRERVFDERSVKYVAAALL
SLLGDLHESQLLFRGLQPELLYVDALGRLLATDFRHAKVGLEKTYTLCGH
AAYAAPEMVSRRGHQQAVDYWQLGILLFELLTGGDTPFALAAAATHAAQN
EKGATAGGGGGGVEARGEDEKAPLPTEDEIYRSISSYTSSSFLPWPSTLP
LSPDCKSFISSLLAPNPSSRLGSRQGTVEGKTHRWLKGMKFDELFCASFG
GGGGGREGRREMLSPLYPVTQAWLRKKLVGVDGEGGWEEVAEAWRRVNEG
RYEGKQELYEFGF*

mRNA from alignment at chr30:252880..255044+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00690.1 ID=NO30G00690.1|Name=NO30G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2165bp|location=Sequence derived from alignment at chr30:252880..255044+ (Nannochloropsis oceanica)
ATGATTAGGAATTCGTCGGCTTCGAGGAGTATCAATATAGGAGGAGGAAA
TACGGTGGCTTCTGCTGTATTTGCAGCAGCCGCAGCAGCAGCAACGACAA
CAATAACAACAGCAGAAGGGCGGGTAACGACTGCTGCCGCTGAAAGGGGA
GGGAGGGAGGGAGAGAGGAATTCGGGGGTGGTTGCTGCACTGGTGGCGGC
GGCCGCAATGGGGGAAAGGACTGTCGAGGTGCCGGAGATGAGGGAGGGGA
GGGGGGAGGGAGGGAGGGCGGGCGTGTTAGAGAGACTGGCATTGGTTCAC
GAGGATGACTTGGGAGCTGTCTTTCTAGCCCGGTATCCCACTGCTGCGGC
TGCTGCTGCTGCTGCCGCTACAGCACCGCCGGCTTCTTCCTCCAAGCCAG
CCTTCACAAGGAGCAACAGCAGCGGGAGCAAGGGCCCGTCTTCCTTCTTC
CTCAAGACCTCTCTCACGCCCGCCGTCAAGAAAGATGAGGTGAACCCGAG
CCCTTCCTCCGTCCCTTCATACACCTACTGCCTCCTCCGCGCCAGCAACA
AGGCGTCTCTCGTCGCCTCCCACGCGGAAGCGGCTGCTCTTAAGGTACGT
CATATTCCGTGCTTCCCTCCCTCCCCTCCTCCCTCCCTGCTTGAGACCAC
CATCTGAGCCCTTCCACTCCTGTACTCCACACCCTTTCCCTCCCGCCCCT
CCTTCATCTCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCTCATCACAG
CGTGCGGCCCTGAGCAGCCTCTTGTCCTCCCGCCTCGCGCCTCGAGGAGG
GGCCTCCCCCTTCCTCCCTCCCCTTATCGCCTCCTTCTCCAGCAGCAACA
CGCACCCCCACACCTTCCTGCAGCTCCTCGCAGGCCAGCCGGTTGCCTCC
TTCCGGCGTCTCTTGCAGGAGGGATGGGGGGAGGGAGGGGTCGAAGGAGG
GAGGGAGGGACGTTTTCTCCATTCTTCTTCTCCTTCATTCTTCTCGTGGG
GAGGGGGCGGTAACCCCTCGTCGTCGGCTACCCCCTCGCCCTCTTCCTCT
CCTGCCAAGCCGAATCAGCCACATCAGCTGCCTCAGGATCACGCGACCGG
CGTGCTCCCTCCTTCCTTCCCTTCCTCCCTCCAGGCCTCGACCTTGCCCA
CACGGGAAAGGGTCTTTGACGAGAGAAGTGTGAAGTATGTGGCCGCCGCC
CTCCTCTCCCTCCTCGGAGACCTGCACGAGAGCCAGCTTCTCTTCCGGGG
CCTGCAGCCGGAGTTGCTGTACGTGGATGCACTGGGGAGGCTGCTGGCGA
CCGATTTCAGACACGCCAAAGTCGGATTGGAGAAGGTCCGTCGCTTTCTC
CATGGGAGTCAGGCTCTTCCTGTTCTTCTTTTTTCTTCCATTTTCTTCCC
TCTTCTTCTTTTTTTCCCTTTGTCTTCTATTGTCAAATCTGATTCTCGCT
CCTTCCATTCGCCCACCCCTCCCTCTCTTCCTCCCCTCCTCTTTCCCTCC
AGACCTACACCCTGTGTGGCCACGCCGCCTACGCAGCCCCCGAGATGGTT
TCCCGCCGAGGCCACCAGCAGGCTGTCGACTACTGGCAGCTCGGCATCTT
GCTCTTCGAGCTCCTCACCGGCGGCGACACCCCCTTTGCCCTGGCTGCTG
CTGCCACTCATGCCGCCCAAAATGAAAAAGGAGCAACGGCAGGAGGAGGA
GGAGGCGGGGTCGAGGCGAGGGGGGAGGACGAAAAGGCACCACTGCCAAC
TGAAGATGAGATTTACCGCTCCATCTCCTCCTACACCTCTTCCTCCTTCT
TGCCCTGGCCCTCCACCCTCCCTCTCTCTCCCGACTGCAAGTCCTTTATT
TCCTCCCTCCTGGCTCCCAACCCCTCCTCGCGCCTGGGGTCCCGCCAAGG
GACTGTAGAAGGAAAGACCCACAGGTGGCTCAAGGGAATGAAGTTCGATG
AACTCTTCTGTGCTTCCTTTGGCGGAGGAGGGGGAGGTAGGGAGGGAAGG
AGAGAGATGTTATCTCCGCTGTACCCAGTGACGCAAGCATGGTTGAGGAA
GAAGCTGGTAGGGGTGGATGGGGAGGGAGGATGGGAGGAGGTGGCGGAGG
CTTGGAGGAGGGTGAATGAGGGCAGGTATGAAGGGAAGCAGGAGTTGTAT
GAATTTGGGTTTTAA

Coding sequence (CDS) from alignment at chr30:252880..255044+

>NO30G00690.1 ID=NO30G00690.1|Name=NO30G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr30:252880..255044+ (Nannochloropsis oceanica)
ATGATTAGGAATTCGTCGGCTTCGAGGAGTATCAATATAGGAGGAGGAAA
TACGGTGGCTTCTGCTGTATTTGCAGCAGCCGCAGCAGCAGCAACGACAA
CAATAACAACAGCAGAAGGGCGGGTAACGACTGCTGCCGCTGAAAGGGGA
GGGAGGGAGGGAGAGAGGAATTCGGGGGTGGTTGCTGCACTGGTGGCGGC
GGCCGCAATGGGGGAAAGGACTGTCGAGGTGCCGGAGATGAGGGAGGGGA
GGGGGGAGGGAGGGAGGGCGGGCGTGTTAGAGAGACTGGCATTGGTTCAC
GAGGATGACTTGGGAGCTGTCTTTCTAGCCCGGTATCCCACTGCTGCGGC
TGCTGCTGCTGCTGCCGCTACAGCACCGCCGGCTTCTTCCTCCAAGCCAG
CCTTCACAAGGAGCAACAGCAGCGGGAGCAAGGGCCCGTCTTCCTTCTTC
CTCAAGACCTCTCTCACGCCCGCCGTCAAGAAAGATGAGGTGAACCCGAG
CCCTTCCTCCGTCCCTTCATACACCTACTGCCTCCTCCGCGCCAGCAACA
AGGCGTCTCTCGTCGCCTCCCACGCGGAAGCGGCTGCTCTTAAGCGTGCG
GCCCTGAGCAGCCTCTTGTCCTCCCGCCTCGCGCCTCGAGGAGGGGCCTC
CCCCTTCCTCCCTCCCCTTATCGCCTCCTTCTCCAGCAGCAACACGCACC
CCCACACCTTCCTGCAGCTCCTCGCAGGCCAGCCGGTTGCCTCCTTCCGG
CGTCTCTTGCAGGAGGGATGGGGGGAGGGAGGGGTCGAAGGAGGGAGGGA
GGGACGTTTTCTCCATTCTTCTTCTCCTTCATTCTTCTCGTGGGGAGGGG
GCGGTAACCCCTCGTCGTCGGCTACCCCCTCGCCCTCTTCCTCTCCTGCC
AAGCCGAATCAGCCACATCAGCTGCCTCAGGATCACGCGACCGGCGTGCT
CCCTCCTTCCTTCCCTTCCTCCCTCCAGGCCTCGACCTTGCCCACACGGG
AAAGGGTCTTTGACGAGAGAAGTGTGAAGTATGTGGCCGCCGCCCTCCTC
TCCCTCCTCGGAGACCTGCACGAGAGCCAGCTTCTCTTCCGGGGCCTGCA
GCCGGAGTTGCTGTACGTGGATGCACTGGGGAGGCTGCTGGCGACCGATT
TCAGACACGCCAAAGTCGGATTGGAGAAGACCTACACCCTGTGTGGCCAC
GCCGCCTACGCAGCCCCCGAGATGGTTTCCCGCCGAGGCCACCAGCAGGC
TGTCGACTACTGGCAGCTCGGCATCTTGCTCTTCGAGCTCCTCACCGGCG
GCGACACCCCCTTTGCCCTGGCTGCTGCTGCCACTCATGCCGCCCAAAAT
GAAAAAGGAGCAACGGCAGGAGGAGGAGGAGGCGGGGTCGAGGCGAGGGG
GGAGGACGAAAAGGCACCACTGCCAACTGAAGATGAGATTTACCGCTCCA
TCTCCTCCTACACCTCTTCCTCCTTCTTGCCCTGGCCCTCCACCCTCCCT
CTCTCTCCCGACTGCAAGTCCTTTATTTCCTCCCTCCTGGCTCCCAACCC
CTCCTCGCGCCTGGGGTCCCGCCAAGGGACTGTAGAAGGAAAGACCCACA
GGTGGCTCAAGGGAATGAAGTTCGATGAACTCTTCTGTGCTTCCTTTGGC
GGAGGAGGGGGAGGTAGGGAGGGAAGGAGAGAGATGTTATCTCCGCTGTA
CCCAGTGACGCAAGCATGGTTGAGGAAGAAGCTGGTAGGGGTGGATGGGG
AGGGAGGATGGGAGGAGGTGGCGGAGGCTTGGAGGAGGGTGAATGAGGGC
AGGTATGAAGGGAAGCAGGAGTTGTATGAATTTGGGTTTTAA

Synonyms

Publications