NO30G00670.1, NO30G00670.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00670.1
Unique Name	NO30G00670.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1800
Alignment location	chr30:248977..251922 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:248977..251922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO30G00670.1 vs.
Match: EWM20604.1 (cgmp-dependent protein [Nannochloropsis gaditana])

HSP 1 Score: 300.4 bits (768), Expect = 1.200e-77
Identity = 183/344 (53.20%), Postives = 208/344 (60.47%), Query Frame = 0

Query:  162 MFVCNVGDSRAILGQRASAARGGREGGREGGNGSNPSPAPGSQGGGLTSAAAAAGPPVAAAPSLAAVNGGHGPSSSPPPSASSVLPQLIGGEAAAAAAAAVAGEEEVRVYPLSDDQTPYRRDERERVKKCGARVLSMDQLAGFEPLHEKWGASVKLGEAIDEAGDPPRVWSKYGEYPGTAFTRSLGDSIAEELGVYAVPEITVRKVSAKDKYVMVASDGVFEFLTNAHCIDIVKGHSDPLAACHAVVREAFNLWLSYEVRTDDITLICLYIDEAGQG-----GKGDEEVTATTATTAAAATVTPAATPAAATPAAGELLVPKPKGRAGAPEDGGGRGREEGVSR 501
            MFVCNVGDSRAIL QR  A                P PAP           A        AP+ AAV G +G                                 E+RV+PLS+DQTPYRRDERERVK+CGARVLSMDQ+AGFEPLHEKWG  V+LGEAIDEAGDPPRVWSKYGEYPGTAFTRSLGDSIAEELGVYAVPEITVRK+S +D+YVMVASDGV+EFLTN  CI  +  HSDPLAA  A+ R+AF+LWLSYE+R+DDITLICL++D  G G     G G+E          +  TV P               +  P+GR G  E     GRE G +R
Sbjct:    1 MFVCNVGDSRAILAQRPRA----------------PEPAP-----------APPDATAVTAPNGAAVTGRNG--------------------------------AELRVFPLSEDQTPYRRDERERVKRCGARVLSMDQMAGFEPLHEKWG-DVRLGEAIDEAGDPPRVWSKYGEYPGTAFTRSLGDSIAEELGVYAVPEITVRKISPRDQYVMVASDGVYEFLTNKQCIQTLHEHSDPLAATQALARKAFDLWLSYEIRSDDITLICLFMDHVGAGKKEGEGAGEEGEEEEEDPAWSLKTVRP---------------LRSPRGREGGREGRREGGREGGRAR 269

The following BLAST results are available for this feature:

BLAST of NO30G00670.1 vs.

BLAST of NO30G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20604.1	1.200e-77	53.20	cgmp-dependent protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00670	NO30G00670	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00670.1	NO30G00670.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00670.1.cds1	NO30G00670.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00670.1.cds2	NO30G00670.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00670.1.cds3	NO30G00670.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00670.1.cds4	NO30G00670.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00670.1.cds5	NO30G00670.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00670.1.cds6	NO30G00670.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:248977..251922+
coding sequence from alignment at chr30:248977..251922+

mRNA sequence

>NO30G00670.1 ID=NO30G00670.1|Name=NO30G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
ATGGGTTGCATCCACTCAGGTCCCAAGACGCAGGGTGCGCGTCGGCCAAA
AGCGCCGAAAGCAACCGATAAAATCATTCTTGATAGGATTGAGGCTAGCA
CAGCGACGGTCGAGACGACGATCGGAAGCACAAAATTGCGGTATGCTTAC
GTATCGCAACGAGGCTACTACCCGGACGCCCTGCACAAAGCCAACCAAGA
CTGCTTCCTCGTCTGCCGCAACTTCATGCGCGACCCCGACCGGGCCGTGT
TCGCCGTCTTTGACGGCCATGGCCGAGAGGGTGACCTCTGTGCTCAGTTC
TGCCGAGATCTGCTGGTGGAGAAGCTGGGAAAGCATTTGAAGGGGAAAGA
GACGGAGAAGGACATCAGGGCGGGGCTCACGCGCGGCTTCCTGGAGCTGA
ACGAGCTGCTCCATTCCTGCCCCGGCATCGACGACACCCTCAGCGGCACC
ACGGCCATCGTCCTCCTCCTCCTGGGCGACCGCATGTTCGTCTGCAACGT
GGGCGACTCCCGTGCCATCCTGGGCCAGCGCGCTTCAGCCGCTAGAGGAG
GGAGGGAGGGAGGGAGGGAGGGTGGCAACGGCTCAAACCCTAGCCCTGCC
CCTGGTTCCCAAGGGGGGGGGCTAACCTCCGCTGCTGCCGCTGCTGGTCC
TCCTGTTGCAGCTGCTCCTTCTCTTGCTGCGGTCAATGGAGGACACGGCC
CGTCTTCCTCCCCCCCTCCCTCGGCCTCCTCAGTGCTGCCTCAGTTGATC
GGTGGTGAGGCGGCAGCAGCCGCAGCGGCGGCCGTGGCGGGGGAGGAGGA
GGTCCGGGTGTACCCCTTGAGCGACGACCAGACCCCGTACCGACGGGATG
AGAGGGAGAGGGTGAAGAAGTGTGGTGCCCGCGTCCTGAGCATGGACCAG
CTCGCGGGCTTCGAGCCCCTGCACGAGAAGTGGGGGGCCAGCGTGAAGCT
GGGGGAAGCGATCGACGAGGCCGGAGACCCCCCGCGGGTGTGGAGCAAGT
ATGGCGAGTACCCCGGCACAGCCTTCACCCGCTCCCTCGGTGACAGCATT
GCCGAGGAGCTGGGCGTGTACGCGGTGCCGGAGATCACCGTCAGGAAGGT
CAGCGCCAAGGACAAATACGTCATGGTGGCCAGTGACGGGGTGTTTGAGT
TTTTGACCAACGCGCACTGCATCGACATAGTGAAGGGACATAGTGACCCC
TTGGCGGCCTGCCACGCCGTGGTGCGTGAGGCCTTCAACCTGTGGCTCTC
TTATGAGGTGCGCACGGACGACATCACGCTCATCTGCCTCTACATCGACG
AGGCAGGGCAGGGGGGGAAGGGCGATGAAGAGGTAACAGCAACAACAGCA
ACAACAGCAGCAGCAGCAACAGTAACACCAGCAGCAACACCAGCAGCAGC
AACACCAGCAGCCGGAGAGCTTCTAGTCCCGAAGCCAAAAGGTAGGGCAG
GGGCGCCTGAGGATGGGGGAGGGAGAGGCAGGGAGGAAGGGGTGTCGAGG
AAGAGGAAGGATTTcggcgagctaagggtgaccaaggaggaggcggcgga
acgaattattcggggagcgctttctagaagcttttttttccaaagcttct
cggacagcaagcggacgtctgtggcggagatgatgaagagggtcgaggtt
gggagggagggactgaaggaggggggccgagggggggccaaggcgggttt
gaggagtggggaggggggggtggaggggaggaagggacggaggctgggga
ggggggacgattttatgtggtggagaagggggccgtggaagtgcggatga

protein sequence of NO30G00670.1

>NO30G00670.1-protein ID=NO30G00670.1-protein|Name=NO30G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MGCIHSGPKTQGARRPKAPKATDKIILDRIEASTATVETTIGSTKLRYAY
VSQRGYYPDALHKANQDCFLVCRNFMRDPDRAVFAVFDGHGREGDLCAQF
CRDLLVEKLGKHLKGKETEKDIRAGLTRGFLELNELLHSCPGIDDTLSGT
TAIVLLLLGDRMFVCNVGDSRAILGQRASAARGGREGGREGGNGSNPSPA
PGSQGGGLTSAAAAAGPPVAAAPSLAAVNGGHGPSSSPPPSASSVLPQLI
GGEAAAAAAAAVAGEEEVRVYPLSDDQTPYRRDERERVKKCGARVLSMDQ
LAGFEPLHEKWGASVKLGEAIDEAGDPPRVWSKYGEYPGTAFTRSLGDSI
AEELGVYAVPEITVRKVSAKDKYVMVASDGVFEFLTNAHCIDIVKGHSDP
LAACHAVVREAFNLWLSYEVRTDDITLICLYIDEAGQGGKGDEEVTATTA
TTAAAATVTPAATPAAATPAAGELLVPKPKGRAGAPEDGGGRGREEGVSR
KRKDFGELRVTKEEAAERIIRGALSRSFFFQSFSDSKRTSVAEMMKRVEV
GREGLKEGGRGGAKAGLRSGEGGVEGRKGRRLGRGDDFMWWRRGPWKCG*

mRNA from alignment at chr30:248977..251922+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00670.1 ID=NO30G00670.1|Name=NO30G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2946bp|location=Sequence derived from alignment at chr30:248977..251922+ (Nannochloropsis oceanica)
ATGGGTTGCATCCACTCAGGTCCCAAGACGCAGGGTGCGCGTCGGCCAAA
AGCGCCGAAAGCAACCGATAAAATCATTCTTGATAGGATTGAGGCTAGCA
CAGCGACGGTCGAGACGACGATCGGAAGCACAAAATTGCGGTATGCTTAC
GTATCGCAACGAGGTAGGTGGAAGGCAGGGAGGGGAATATAAATCAGTAA
AAGGAACCATGAAGGCCCTGACGTCTTATAAAATCTTGTCTTCCTTCCTT
TTTTTTTTCCTTCCTTCCTTCCTGCCTCCCTTCCCCTCTTCCTGTCCTTC
CTGCCGCGCCCAGGCTACTACCCGGACGCCCTGCACAAAGCCAACCAAGA
CTGCTTCCTCGTCTGCCGCAACTTCATGCGCGACCCCGACCGGGCCGTGT
TCGCCGTCTTTGACGGCCATGGCCGAGAGGGTGACCTCTGTGCTCAGTTC
TGCCGAGATCTGCTGGTGGAGAAGCTGGGAAAGCATTTGAAGGGGAAAGA
GACGGAGAAGGACATCAGGGCGGGGTACGTCATCATTTCTTGCTTGCTTG
CTTGCCTTTATGTGAACCCCTCCATCCCACCCGCCTTCCCTCCCTCCCTC
CACCCTTTCCATCACTCCGTGACCGCAGAGGAAGGATGTACGCGTGTGTA
GATGAGTCTCACACATGCTCACCTCGATTCGAACAACCCCTTCCCACACA
CCCACGCATCAACCCACCCGCACATACCGACTGATGCCCACCTACACACA
TACCAACTGATGCCCACCCAAAAGGCTCACGCGCGGCTTCCTGGAGCTGA
ACGAGCTGCTCCATTCCTGCCCCGGCATCGACGACACCCTCAGCGGCACC
ACGGCCATCGTCCTCCTCCTCCTGGGCGACCGCATGTTCGTCTGCAACGT
GGGCGACTCCCGTGCCATCCTGGGCCAGCGCGCTTCAGCCGCTAGAGGAG
GGAGGGAGGGAGGGAGGGAGGGTGGCAACGGCTCAAACCCTAGCCCTGCC
CCTGGTTCCCAAGGGGGGGGGCTAACCTCCGCTGCTGCCGCTGCTGGTCC
TCCTGTTGCAGCTGCTCCTTCTCTTGCTGCGGTCAATGGAGGACACGGCC
CGTCTTCCTCCCCCCCTCCCTCGGCCTCCTCAGTGCTGCCTCAGTTGATC
GGTGGTGAGGCGGCAGCAGCCGCAGCGGCGGCCGTGGCGGGGGAGGAGGA
GGTCCGGGTGTACCCCTTGAGCGACGACCAGACCCCGTACCGACGGGATG
AGAGGGAGAGGGTGAAGAAGTGTGGTGCCCGCGTCCTGAGCATGGACCAG
CTCGCGGGCTTCGAGCCCCTGCACGAGAAGTGGGGGGCCAGCGTGAAGCT
GGGGGAAGCGATCGACGAGGCCGGAGACCCCCCGCGGGTGTGGAGCAAGT
ATGGTGCGTAGGGACAACATGGTGCTTCAAGGCTTTCTTCCCTTTGGTTC
GCATCTCTCCCTCCCTCCCTCCCTCCCTGGGTGGGGGCGAGGGGCATGGC
TGGGGTAGGGTGTGGGCCAGTGTGACCGACGCGTTTCCCCCTTCTACCCC
CTGATCGCTCTCCCGTCCTCCACCTTTTCTTCCTTCCTCCCTCCCTCTCT
CCTCATGGTGTCCGCCTCCCCAGGCCCGTCGTTACAACACCCCATCACCT
TGTCTGATGGGCATCCCAAGGAATAACAAACCTGACCCACCGCTCCCCTC
CCTCCCTTCCCCCCTCAGGCGAGTACCCCGGCACAGCCTTCACCCGCTCC
CTCGGTGACAGCATTGCCGAGGAGCTGGGCGTGTACGCGGTGCCGGAGAT
CACCGTCAGGAAGGTCAGCGCCAAGGACAAATACGTCATGGTGGCCAGTG
ACGGTAAGAAAGGAGAGAGGGAAGGAGGGAGGGAGGGACGGGTAGGGGAC
CACGTCTGTCTGTCCTACGAAGCCCATACAGCTCACCCTCGTGCTTCCCT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTTCCAGGGG
TGTTTGAGTTTTTGACCAACGCGCACTGCATCGACATAGTGAAGGGACAT
AGTGACCCCTTGGCGGCCTGCCACGCCGTGGTGCGTGAGGCCTTCAACCT
GTGGCTCTCTTATGAGGTGCGCACGGACGACATCACGCTCATCTGCCTCT
ACATCGACGAGGCAGGGCAGGGGGGGAAGGGCGGTGCGTTGAGCGTGGGT
GTTGAGGAGGGGGAGGAGGAGGACCCGGCATGGGCCATGACCACCACCCG
GCCGTTGAGGTCGCCGAGGGGGAGGATGCCGGGAGGGTTCAACCGAGAGG
GGGGAGGGGGGAGGGAGGGAAGGAGGGGGGGATGGGGAAGGATCTGTGTG
TGTATTCCTCTGTGGCGGCTACAGGGACTGTAGCCAGCCTGACGCCCAAG
GGGGGTGGGGGAGGTTTTTTCGCCGCCTCCCCCTCCAAGCGAGTCGTCTC
CTTCTCCCCCGCCACCATAGATGAAGAGGTAACAGCAACAACAGCAACAA
CAGCAGCAGCAGCAACAGTAACACCAGCAGCAACACCAGCAGCAGCAACA
CCAGCAGCCGGAGAGCTTCTAGTCCCGAAGCCAAAAGGTAGGGCAGGGGC
GCCTGAGGATGGGGGAGGGAGAGGCAGGGAGGAAGGGGTGTCGAGGAAGA
GGAAGGATTTcggcgagctaagggtgaccaaggaggaggcggcggaacga
attattcggggagcgctttctagaagcttttttttccaaagcttctcgga
cagcaagcggacgtctgtggcggagatgatgaagagggtcgaggttggga
gggagggactgaaggaggggggccgagggggggccaaggcgggtttgagg
agtggggaggggggggtggaggggaggaagggacggaggctggggagggg
ggacgattttatgtggtggagaagggggccgtggaagtgcggatga

Coding sequence (CDS) from alignment at chr30:248977..251922+

>NO30G00670.1 ID=NO30G00670.1|Name=NO30G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at chr30:248977..251922+ (Nannochloropsis oceanica)
ATGGGTTGCATCCACTCAGGTCCCAAGACGCAGGGTGCGCGTCGGCCAAA
AGCGCCGAAAGCAACCGATAAAATCATTCTTGATAGGATTGAGGCTAGCA
CAGCGACGGTCGAGACGACGATCGGAAGCACAAAATTGCGGTATGCTTAC
GTATCGCAACGAGGCTACTACCCGGACGCCCTGCACAAAGCCAACCAAGA
CTGCTTCCTCGTCTGCCGCAACTTCATGCGCGACCCCGACCGGGCCGTGT
TCGCCGTCTTTGACGGCCATGGCCGAGAGGGTGACCTCTGTGCTCAGTTC
TGCCGAGATCTGCTGGTGGAGAAGCTGGGAAAGCATTTGAAGGGGAAAGA
GACGGAGAAGGACATCAGGGCGGGGCTCACGCGCGGCTTCCTGGAGCTGA
ACGAGCTGCTCCATTCCTGCCCCGGCATCGACGACACCCTCAGCGGCACC
ACGGCCATCGTCCTCCTCCTCCTGGGCGACCGCATGTTCGTCTGCAACGT
GGGCGACTCCCGTGCCATCCTGGGCCAGCGCGCTTCAGCCGCTAGAGGAG
GGAGGGAGGGAGGGAGGGAGGGTGGCAACGGCTCAAACCCTAGCCCTGCC
CCTGGTTCCCAAGGGGGGGGGCTAACCTCCGCTGCTGCCGCTGCTGGTCC
TCCTGTTGCAGCTGCTCCTTCTCTTGCTGCGGTCAATGGAGGACACGGCC
CGTCTTCCTCCCCCCCTCCCTCGGCCTCCTCAGTGCTGCCTCAGTTGATC
GGTGGTGAGGCGGCAGCAGCCGCAGCGGCGGCCGTGGCGGGGGAGGAGGA
GGTCCGGGTGTACCCCTTGAGCGACGACCAGACCCCGTACCGACGGGATG
AGAGGGAGAGGGTGAAGAAGTGTGGTGCCCGCGTCCTGAGCATGGACCAG
CTCGCGGGCTTCGAGCCCCTGCACGAGAAGTGGGGGGCCAGCGTGAAGCT
GGGGGAAGCGATCGACGAGGCCGGAGACCCCCCGCGGGTGTGGAGCAAGT
ATGGCGAGTACCCCGGCACAGCCTTCACCCGCTCCCTCGGTGACAGCATT
GCCGAGGAGCTGGGCGTGTACGCGGTGCCGGAGATCACCGTCAGGAAGGT
CAGCGCCAAGGACAAATACGTCATGGTGGCCAGTGACGGGGTGTTTGAGT
TTTTGACCAACGCGCACTGCATCGACATAGTGAAGGGACATAGTGACCCC
TTGGCGGCCTGCCACGCCGTGGTGCGTGAGGCCTTCAACCTGTGGCTCTC
TTATGAGGTGCGCACGGACGACATCACGCTCATCTGCCTCTACATCGACG
AGGCAGGGCAGGGGGGGAAGGGCGATGAAGAGGTAACAGCAACAACAGCA
ACAACAGCAGCAGCAGCAACAGTAACACCAGCAGCAACACCAGCAGCAGC
AACACCAGCAGCCGGAGAGCTTCTAGTCCCGAAGCCAAAAGGTAGGGCAG
GGGCGCCTGAGGATGGGGGAGGGAGAGGCAGGGAGGAAGGGGTGTCGAGG
AAGAGGAAGGATTTcggcgagctaagggtgaccaaggaggaggcggcgga
acgaattattcggggagcgctttctagaagcttttttttccaaagcttct
cggacagcaagcggacgtctgtggcggagatgatgaagagggtcgaggtt
gggagggagggactgaaggaggggggccgagggggggccaaggcgggttt
gaggagtggggaggggggggtggaggggaggaagggacggaggctgggga
ggggggacgattttatgtggtggagaagggggccgtggaagtgcggatga

Synonyms

Publications